Wall clock time and date at job start Tue Mar 31 2020 15:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.39024 * 120.00075 * 179.97438 * 2 1 3 5 5 C 1.39320 * 119.90066 * 0.02562 * 4 2 1 6 6 C 1.36504 * 120.27584 * 179.97438 * 5 4 2 7 7 C 1.39923 * 120.06993 * 359.97438 * 6 5 4 8 8 C 1.47223 * 120.09512 * 180.02562 * 7 6 5 9 9 O 1.21544 * 119.99901 * 179.97438 * 8 7 6 10 10 O 1.34774 * 120.00316 * 359.97438 * 8 7 6 11 11 C 1.45199 * 117.00406 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47438 * 180.02562 * 11 10 8 13 13 C 1.52994 * 109.47162 * 179.97438 * 12 11 10 14 14 S 1.81001 * 109.47163 * 179.97438 * 13 12 11 15 15 C 1.76203 * 100.00342 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99634 * 359.97438 * 15 14 13 17 17 C 1.38795 * 120.00043 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00348 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99738 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47109 * 59.99834 * 19 17 15 21 21 H 1.48503 * 109.46769 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46880 * 299.99356 * 19 17 15 23 23 C 1.40133 * 119.80897 * 0.02562 * 7 6 5 24 24 F 1.35090 * 120.13845 * 180.02562 * 23 7 6 25 25 C 1.37987 * 119.72077 * 359.72804 * 23 7 6 26 26 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 27 27 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 28 28 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 29 29 H 1.09000 * 109.47202 * 89.99334 * 3 2 1 30 30 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 31 31 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 32 32 H 1.07997 * 119.86453 * 0.02562 * 5 4 2 33 33 H 1.07995 * 119.96667 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.46915 * 300.00489 * 11 10 8 35 35 H 1.08998 * 109.46921 * 60.00414 * 11 10 8 36 36 H 1.09000 * 109.46976 * 299.99850 * 12 11 10 37 37 H 1.08998 * 109.47218 * 59.99994 * 12 11 10 38 38 H 1.08992 * 109.47915 * 299.99804 * 13 12 11 39 39 H 1.09011 * 109.47130 * 60.00202 * 13 12 11 40 40 H 0.96999 * 120.00042 * 180.02562 * 18 17 15 41 41 H 1.08004 * 120.03425 * 180.26757 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1601 -1.2040 0.0005 5 6 1.4614 -2.4093 0.0005 6 6 2.1362 -3.5959 0.0005 7 6 3.5354 -3.6068 0.0000 8 6 4.2637 -4.8862 -0.0006 9 8 5.4792 -4.8936 -0.0015 10 8 3.5828 -6.0493 -0.0001 11 6 4.3662 -7.2718 -0.0001 12 6 3.4269 -8.4795 -0.0001 13 6 4.2523 -9.7677 -0.0008 14 16 3.1411 -11.1964 0.0000 15 6 4.3229 -12.5033 -0.0002 16 1 5.3788 -12.2765 -0.0011 17 6 3.8968 -13.8243 -0.0003 18 7 2.6098 -14.1007 0.0003 19 14 5.1497 -15.2098 -0.0012 20 1 6.0015 -15.1076 1.2109 21 1 4.4432 -16.5160 -0.0005 22 1 6.0002 -15.1072 -1.2142 23 6 4.2414 -2.3963 0.0000 24 9 5.5923 -2.3990 -0.0010 25 6 3.5510 -1.2016 -0.0052 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 -0.8900 -0.5138 28 1 -0.3633 0.8900 -0.5139 29 1 2.3791 1.5834 1.0277 30 1 3.1499 1.1384 -0.5137 31 1 1.6085 2.0284 -0.5138 32 1 0.3815 -2.4049 -0.0003 33 1 1.5896 -4.5273 0.0010 34 1 4.9946 -7.3007 -0.8903 35 1 4.9951 -7.3004 0.8897 36 1 2.7982 -8.4509 0.8899 37 1 2.7982 -8.4508 -0.8901 38 1 4.8806 -9.7962 -0.8909 39 1 4.8813 -9.7966 0.8891 40 1 2.3121 -15.0239 0.0006 41 1 4.0900 -0.2657 -0.0095 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805516451.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:20 Heat of formation + Delta-G solvation = -123.751659 kcal Electronic energy + Delta-G solvation = -23828.797447 eV Core-core repulsion = 19941.747342 eV Total energy + Delta-G solvation = -3887.050105 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.05038 -41.53916 -40.46744 -37.83165 -37.07816 -34.88803 -34.57654 -32.22919 -31.50237 -29.01463 -28.27612 -27.56331 -26.46370 -23.70472 -23.37342 -22.68104 -21.71784 -19.62918 -19.20071 -18.60623 -17.90263 -17.76729 -17.37510 -16.89319 -16.86040 -16.77947 -16.20054 -15.98028 -15.86692 -15.62466 -15.36601 -14.94643 -14.46567 -14.15492 -13.98335 -13.80993 -13.54551 -13.41151 -13.29087 -13.13551 -13.12168 -12.93315 -12.91718 -12.63398 -12.40562 -12.38196 -12.05711 -11.72532 -11.51959 -11.41750 -11.13769 -11.00141 -10.36634 -10.00931 -8.67336 -8.52183 -8.37598 -6.14062 -0.34975 0.20761 1.26772 1.41426 1.42054 1.46259 1.51115 1.84626 1.98835 2.27532 2.61928 2.96740 3.13122 3.28735 3.57260 3.66621 3.85032 3.93110 3.99359 4.07341 4.14526 4.21534 4.32422 4.39824 4.45533 4.50284 4.56156 4.68624 4.73613 4.83429 4.89692 4.93919 5.00524 5.02338 5.06913 5.14367 5.21857 5.39759 5.40811 5.55056 6.10580 6.17916 6.22943 6.67224 7.04706 8.71474 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.030280 B = 0.001810 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.472705 B =15466.024362 C =16354.143489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.617 5.617 3 C 0.075 3.925 4 C 0.282 3.718 5 C -0.215 4.215 6 C 0.020 3.980 7 C -0.256 4.256 8 C 0.508 3.492 9 O -0.546 6.546 10 O -0.348 6.348 11 C 0.081 3.919 12 C -0.083 4.083 13 C -0.093 4.093 14 S -0.179 6.179 15 C -0.544 4.544 16 H 0.073 0.927 17 C 0.017 3.983 18 N -0.905 5.905 19 Si 0.993 3.007 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.265 1.265 23 C 0.195 3.805 24 F -0.135 7.135 25 C -0.255 4.255 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.167 0.833 33 H 0.158 0.842 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.272 0.728 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.265 34.880 -0.225 35.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.322 5.322 3 C -0.067 4.067 4 C 0.172 3.828 5 C -0.237 4.237 6 C 0.001 3.999 7 C -0.260 4.260 8 C 0.356 3.644 9 O -0.439 6.439 10 O -0.265 6.265 11 C 0.006 3.994 12 C -0.121 4.121 13 C -0.242 4.242 14 S 0.049 5.951 15 C -0.692 4.692 16 H 0.091 0.909 17 C -0.188 4.188 18 N -0.542 5.542 19 Si 0.815 3.185 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.190 1.190 23 C 0.174 3.826 24 F -0.113 7.113 25 C -0.278 4.278 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.185 0.815 33 H 0.176 0.824 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.288 34.885 -0.226 35.639 hybrid contribution 2.675 -1.157 0.034 2.915 sum -4.613 33.728 -0.192 34.043 Atomic orbital electron populations 1.22077 0.76827 1.04760 1.02903 1.46757 1.06984 1.03116 1.75349 1.22035 0.97945 0.84036 1.02703 1.17871 0.89969 0.87403 0.87548 1.20769 1.01997 0.89504 1.11416 1.20996 0.90293 1.00241 0.88382 1.18928 0.95423 0.88035 1.23659 1.21290 0.85779 0.85079 0.72259 1.90861 1.16106 1.88539 1.48349 1.86479 1.41321 1.14616 1.84088 1.23035 0.93561 0.80086 1.02757 1.21088 0.97451 0.88910 1.04687 1.23078 1.01102 0.96453 1.03592 1.84564 1.14968 0.98499 1.97060 1.23039 0.93966 0.92961 1.59191 0.90886 1.26042 0.98131 1.00939 0.93679 1.70132 1.15528 1.20750 1.47745 0.85077 0.77730 0.76383 0.79295 1.19037 1.19808 1.19028 1.17630 0.76335 0.93334 0.95280 1.91538 1.29605 1.97357 1.92788 1.20583 0.93498 0.96990 1.16773 0.91794 0.89942 0.88992 0.91975 0.90829 0.88728 0.81539 0.82421 0.91129 0.91131 0.89946 0.89943 0.91447 0.91458 0.91867 0.82223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.16 10.22 127.77 1.31 1.46 16 2 N -0.62 -4.41 3.39 -747.36 -2.53 -6.95 16 3 C 0.07 0.25 10.22 127.77 1.31 1.56 16 4 C 0.28 3.58 6.55 38.47 0.25 3.83 16 5 C -0.21 -2.67 9.13 22.12 0.20 -2.47 16 6 C 0.02 0.36 9.55 22.27 0.21 0.57 16 7 C -0.26 -6.39 5.88 -20.05 -0.12 -6.51 16 8 C 0.51 15.99 7.88 70.18 0.55 16.55 16 9 O -0.55 -20.70 15.12 19.69 0.30 -20.40 16 10 O -0.35 -10.42 9.46 -56.85 -0.54 -10.95 16 11 C 0.08 2.50 5.48 71.98 0.39 2.89 16 12 C -0.08 -2.74 5.60 30.59 0.17 -2.57 16 13 C -0.09 -3.81 5.67 71.98 0.41 -3.40 16 14 S -0.18 -9.56 21.44 -56.49 -1.21 -10.77 16 15 C -0.54 -31.68 9.50 67.95 0.65 -31.04 16 16 H 0.07 4.10 7.80 -2.91 -0.02 4.08 16 17 C 0.02 0.99 5.49 84.86 0.47 1.46 16 18 N -0.91 -54.65 13.22 21.65 0.29 -54.36 16 19 Si 0.99 44.29 29.55 68.60 2.03 46.32 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 C 0.19 4.67 7.28 22.67 0.17 4.83 16 24 F -0.13 -3.94 15.54 44.97 0.70 -3.24 16 25 C -0.26 -4.16 9.17 22.41 0.21 -3.96 16 26 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 27 H 0.08 0.10 6.17 -2.39 -0.01 0.09 16 28 H 0.09 -0.12 7.89 -2.38 -0.02 -0.13 16 29 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.07 0.28 6.16 -2.39 -0.01 0.26 16 31 H 0.09 -0.05 7.89 -2.39 -0.02 -0.07 16 32 H 0.17 1.05 6.10 -2.91 -0.02 1.03 16 33 H 0.16 2.44 7.60 -2.91 -0.02 2.41 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.07 2.71 8.14 -2.40 -0.02 2.69 16 39 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.16 1.93 6.11 -2.91 -0.02 1.91 16 Total: -1.00 -76.45 365.83 6.24 -70.20 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 1.05 Total: 6.95 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 6.17 Total: -16.79 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -2.25 Total: -61.31 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.24 Total: -31.36 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.70 Total: -3.24 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: -9.56 SS G_CDS: -1.21 Total: -10.77 kcal Total: -76.45 6.24 -70.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805516451.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.550 kcal (2) G-P(sol) polarization free energy of solvation -76.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds