Wall clock time and date at job start Tue Mar 31 2020 15:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35916 * 117.00028 * 2 1 4 4 C 1.38188 * 120.21412 * 359.97438 * 3 2 1 5 5 C 1.38821 * 120.67830 * 180.02562 * 4 3 2 6 6 C 1.36722 * 120.58949 * 0.02730 * 5 4 3 7 7 C 1.39247 * 119.75283 * 359.97380 * 6 5 4 8 8 C 1.46908 * 135.43990 * 179.97438 * 7 6 5 9 9 C 1.47345 * 126.81617 * 0.02693 * 8 7 6 10 10 O 1.21643 * 119.99868 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00138 * 180.02562 * 9 8 7 12 12 C 1.40525 * 120.00201 * 179.97438 * 11 9 8 13 13 C 1.40672 * 126.08528 * 0.02562 * 12 11 9 14 14 N 1.30899 * 108.38628 * 179.73524 * 13 12 11 15 15 N 1.40065 * 108.41245 * 0.38343 * 14 13 12 16 16 C 1.37320 * 126.06888 * 179.87907 * 15 14 13 17 17 H 1.08002 * 120.00430 * 179.69231 * 16 15 14 18 18 C 1.38992 * 119.99664 * 359.41107 * 16 15 14 19 19 N 1.31294 * 120.00157 * 0.27652 * 18 16 15 20 20 Si 1.86803 * 119.99838 * 180.27798 * 18 16 15 21 21 H 1.48506 * 109.47253 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 119.99952 * 20 18 16 23 23 H 1.48498 * 109.47018 * 239.99998 * 20 18 16 24 24 C 1.35695 * 126.08827 * 179.97438 * 12 11 9 25 25 N 1.31605 * 106.36402 * 180.28456 * 8 7 6 26 26 N 1.28378 * 111.94260 * 359.54923 * 25 8 7 27 27 H 0.97003 * 124.38832 * 180.19452 * 26 25 8 28 28 C 1.37105 * 111.22966 * 0.47625 * 26 25 8 29 29 H 1.08999 * 109.46532 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46939 * 299.99932 * 1 2 3 31 31 H 1.08994 * 109.46689 * 60.00007 * 1 2 3 32 32 H 1.07998 * 119.66231 * 0.02562 * 4 3 2 33 33 H 1.08007 * 119.71046 * 179.97438 * 5 4 3 34 34 H 1.07997 * 120.12435 * 179.97438 * 6 5 4 35 35 H 0.97001 * 119.99284 * 0.02562 * 11 9 8 36 36 H 1.07995 * 125.80354 * 359.97438 * 13 12 11 37 37 H 0.96996 * 120.00263 * 179.97438 * 19 18 16 38 38 H 1.08003 * 126.24504 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2979 2.3728 -0.0005 5 6 1.9181 3.6147 -0.0011 6 6 3.2819 3.7114 -0.0016 7 6 4.0566 2.5543 -0.0011 8 6 5.4955 2.2581 -0.0019 9 6 6.5982 3.2354 -0.0031 10 8 6.3546 4.4272 -0.0040 11 7 7.8767 2.8089 -0.0043 12 6 8.9284 3.7410 -0.0059 13 6 8.7944 5.1413 -0.0061 14 7 9.9916 5.6706 -0.0021 15 7 10.9336 4.6340 -0.0082 16 6 12.2988 4.7822 -0.0089 17 1 12.9367 3.9107 -0.0088 18 6 12.8597 6.0539 -0.0156 19 7 12.0844 7.1134 -0.0158 20 14 14.7168 6.2555 -0.0244 21 1 15.3601 4.9170 -0.0221 22 1 15.1281 7.0008 -1.2412 23 1 15.1387 7.0089 1.1837 24 6 10.2539 3.4504 -0.0067 25 7 5.6040 0.9465 -0.0071 26 7 4.4569 0.3702 -0.0002 27 1 4.3267 -0.5910 0.0003 28 6 3.4395 1.2893 -0.0001 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 0.2195 2.3139 -0.0005 33 1 1.3180 4.5127 -0.0019 34 1 3.7565 4.6815 -0.0025 35 1 8.0708 1.8585 -0.0047 36 1 7.8624 5.6868 -0.0053 37 1 12.4758 8.0009 -0.0201 38 1 10.6911 2.4629 -0.0066 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809149801.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:27 Heat of formation + Delta-G solvation = 108.618956 kcal Electronic energy + Delta-G solvation = -25903.914337 eV Core-core repulsion = 21943.709340 eV Total energy + Delta-G solvation = -3960.204998 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.58772 -39.85799 -39.64554 -38.28903 -36.95560 -34.16813 -33.15436 -32.16139 -30.60007 -30.20834 -29.51854 -27.72912 -27.67419 -25.15840 -23.80456 -22.99240 -22.43058 -20.93418 -20.04213 -19.35644 -18.84532 -17.96122 -17.41801 -16.71620 -16.38181 -16.15614 -15.55717 -15.54231 -15.37415 -15.01243 -14.89785 -14.21312 -14.11418 -13.78203 -13.39264 -13.07083 -12.88792 -12.75762 -12.54369 -11.80378 -11.65618 -11.62030 -11.44404 -11.38451 -11.25262 -11.07388 -10.90746 -10.48106 -10.17412 -9.85159 -9.38087 -9.13593 -9.01761 -8.77247 -8.02135 -7.85475 -6.64335 -6.52346 -4.18552 0.72461 1.15599 1.88921 2.55942 2.79155 2.97137 3.07917 3.13852 3.32143 3.54214 3.58495 3.87566 3.88639 4.27510 4.38216 4.51268 4.55966 4.74692 4.74728 4.78932 4.95008 5.01558 5.05955 5.12086 5.24663 5.44521 5.60927 5.87317 6.25472 6.30187 6.38917 6.47089 6.51724 6.74320 6.94184 6.98682 7.00012 7.15776 7.27238 7.69745 7.90172 8.23890 8.32015 8.65854 8.87354 9.41746 9.71041 10.43753 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.042321 B = 0.002210 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.449839 B =12668.509465 C =13314.800897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.124 3.876 4 C -0.182 4.182 5 C -0.105 4.105 6 C -0.073 4.073 7 C -0.073 4.073 8 C 0.018 3.982 9 C 0.586 3.414 10 O -0.524 6.524 11 N -0.605 5.605 12 C -0.060 4.060 13 C -0.030 4.030 14 N -0.260 5.260 15 N -0.143 5.143 16 C -0.322 4.322 17 H 0.117 0.883 18 C 0.045 3.955 19 N -0.769 5.769 20 Si 0.935 3.065 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.080 4.080 25 N -0.207 5.207 26 N -0.408 5.408 27 H 0.448 0.552 28 C 0.045 3.955 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.145 0.855 35 H 0.403 0.597 36 H 0.178 0.822 37 H 0.274 0.726 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.555 -13.596 0.017 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.238 6.238 3 C 0.077 3.923 4 C -0.203 4.203 5 C -0.124 4.124 6 C -0.094 4.094 7 C -0.081 4.081 8 C -0.153 4.153 9 C 0.370 3.630 10 O -0.399 6.399 11 N -0.247 5.247 12 C -0.165 4.165 13 C -0.206 4.206 14 N -0.091 5.091 15 N 0.090 4.910 16 C -0.454 4.454 17 H 0.134 0.866 18 C -0.172 4.172 19 N -0.396 5.396 20 Si 0.759 3.241 21 H -0.187 1.187 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.231 4.231 25 N -0.038 5.038 26 N -0.127 5.127 27 H 0.293 0.707 28 C -0.069 4.069 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.162 0.838 35 H 0.237 0.763 36 H 0.194 0.806 37 H 0.085 0.915 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.152 -12.431 0.014 22.833 hybrid contribution -0.543 -1.260 -0.008 1.372 sum -19.696 -13.691 0.005 23.987 Atomic orbital electron populations 1.23061 0.77818 1.04013 1.01640 1.85998 1.21884 1.26583 1.89298 1.17707 0.87598 0.85284 1.01743 1.20993 0.99770 0.91460 1.08112 1.20587 0.94226 0.96966 1.00666 1.20388 0.92721 0.97942 0.98316 1.19236 0.91297 0.92420 1.05115 1.22911 0.92995 0.89329 1.10080 1.16383 0.80798 0.86365 0.79448 1.90698 1.83169 1.15105 1.50940 1.42289 1.03631 1.09059 1.69717 1.17246 0.85801 0.89527 1.23945 1.24141 0.97608 0.91129 1.07699 1.78250 0.94979 1.10193 1.25673 1.44556 1.05336 1.02016 1.39113 1.19920 0.77283 0.94925 1.53289 0.86558 1.25646 1.01067 0.94905 0.95536 1.70225 1.35511 0.98439 1.35437 0.85766 0.80694 0.79250 0.78437 1.18701 1.19944 1.19944 1.21264 0.90520 0.91669 1.19681 1.72944 1.08173 1.09241 1.13393 1.42927 1.00446 1.09366 1.59990 0.70664 1.18330 0.88456 0.90394 1.09671 0.88197 0.92404 0.92398 0.84754 0.84942 0.83769 0.76298 0.80552 0.91529 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.87 10.51 -19.48 -0.20 -3.07 16 3 C 0.12 1.32 6.70 -39.11 -0.26 1.05 16 4 C -0.18 -1.67 9.03 -39.38 -0.36 -2.02 16 5 C -0.11 -1.06 9.97 -39.91 -0.40 -1.46 16 6 C -0.07 -0.97 9.86 -39.75 -0.39 -1.36 16 7 C -0.07 -1.08 6.33 -105.06 -0.67 -1.74 16 8 C 0.02 0.29 7.32 -80.75 -0.59 -0.30 16 9 C 0.59 11.35 7.78 -12.56 -0.10 11.25 16 10 O -0.52 -11.50 13.52 5.24 0.07 -11.43 16 11 N -0.61 -11.73 5.46 -10.99 -0.06 -11.79 16 12 C -0.06 -1.41 6.90 -83.86 -0.58 -1.99 16 13 C -0.03 -0.80 10.85 -17.03 -0.18 -0.98 16 14 N -0.26 -7.63 10.39 30.80 0.32 -7.31 16 15 N -0.14 -3.96 3.74 -11.41 -0.04 -4.01 16 16 C -0.32 -8.60 10.25 -14.81 -0.15 -8.75 16 17 H 0.12 2.78 7.83 -52.49 -0.41 2.37 16 18 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 19 N -0.77 -21.65 11.81 55.50 0.66 -21.00 16 20 Si 0.93 19.10 29.55 -169.99 -5.02 14.07 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 24 C -0.08 -1.93 11.49 -16.39 -0.19 -2.12 16 25 N -0.21 -2.89 11.80 34.46 0.41 -2.48 16 26 N -0.41 -4.69 6.85 32.41 0.22 -4.47 16 27 H 0.45 3.59 8.96 -190.49 -1.71 1.88 16 28 C 0.04 0.57 7.32 -84.07 -0.62 -0.05 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 31 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 32 H 0.13 0.82 6.27 -52.49 -0.33 0.49 16 33 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.14 1.99 7.62 -52.49 -0.40 1.59 16 35 H 0.40 6.54 8.56 -40.82 -0.35 6.19 16 36 H 0.18 4.61 5.91 -52.49 -0.31 4.30 16 37 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.15 2.94 8.06 -52.48 -0.42 2.52 16 LS Contribution 337.14 15.07 5.08 5.08 Total: -1.00 -34.69 337.14 -6.87 -41.56 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -4.71 Total: 11.08 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -3.59 Total: -6.24 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 1.50 Total: -51.04 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.13 Total: -14.50 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.69 -6.87 -41.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809149801.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.176 kcal (2) G-P(sol) polarization free energy of solvation -34.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds