Wall clock time and date at job start Tue Mar 31 2020 15:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35916 * 117.00028 * 2 1 4 4 C 1.38188 * 120.21412 * 359.97438 * 3 2 1 5 5 C 1.38821 * 120.67830 * 180.02562 * 4 3 2 6 6 C 1.36722 * 120.58949 * 0.02730 * 5 4 3 7 7 C 1.39247 * 119.75283 * 359.97380 * 6 5 4 8 8 C 1.46908 * 135.43990 * 179.97438 * 7 6 5 9 9 C 1.47345 * 126.81617 * 0.02693 * 8 7 6 10 10 O 1.21643 * 119.99868 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00138 * 180.02562 * 9 8 7 12 12 C 1.40525 * 120.00201 * 179.97438 * 11 9 8 13 13 C 1.40672 * 126.08528 * 0.02562 * 12 11 9 14 14 N 1.30899 * 108.38628 * 179.73524 * 13 12 11 15 15 N 1.40065 * 108.41245 * 0.38343 * 14 13 12 16 16 C 1.37320 * 126.06888 * 179.87907 * 15 14 13 17 17 H 1.08002 * 120.00430 * 179.69231 * 16 15 14 18 18 C 1.38992 * 119.99664 * 359.41107 * 16 15 14 19 19 N 1.31294 * 120.00157 * 0.27652 * 18 16 15 20 20 Si 1.86803 * 119.99838 * 180.27798 * 18 16 15 21 21 H 1.48506 * 109.47253 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 119.99952 * 20 18 16 23 23 H 1.48498 * 109.47018 * 239.99998 * 20 18 16 24 24 C 1.35695 * 126.08827 * 179.97438 * 12 11 9 25 25 N 1.31605 * 106.36402 * 180.28456 * 8 7 6 26 26 N 1.28378 * 111.94260 * 359.54923 * 25 8 7 27 27 H 0.97003 * 124.38832 * 180.19452 * 26 25 8 28 28 C 1.37105 * 111.22966 * 0.47625 * 26 25 8 29 29 H 1.08999 * 109.46532 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46939 * 299.99932 * 1 2 3 31 31 H 1.08994 * 109.46689 * 60.00007 * 1 2 3 32 32 H 1.07998 * 119.66231 * 0.02562 * 4 3 2 33 33 H 1.08007 * 119.71046 * 179.97438 * 5 4 3 34 34 H 1.07997 * 120.12435 * 179.97438 * 6 5 4 35 35 H 0.97001 * 119.99284 * 0.02562 * 11 9 8 36 36 H 1.07995 * 125.80354 * 359.97438 * 13 12 11 37 37 H 0.96996 * 120.00263 * 179.97438 * 19 18 16 38 38 H 1.08003 * 126.24504 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2979 2.3728 -0.0005 5 6 1.9181 3.6147 -0.0011 6 6 3.2819 3.7114 -0.0016 7 6 4.0566 2.5543 -0.0011 8 6 5.4955 2.2581 -0.0019 9 6 6.5982 3.2354 -0.0031 10 8 6.3546 4.4272 -0.0040 11 7 7.8767 2.8089 -0.0043 12 6 8.9284 3.7410 -0.0059 13 6 8.7944 5.1413 -0.0061 14 7 9.9916 5.6706 -0.0021 15 7 10.9336 4.6340 -0.0082 16 6 12.2988 4.7822 -0.0089 17 1 12.9367 3.9107 -0.0088 18 6 12.8597 6.0539 -0.0156 19 7 12.0844 7.1134 -0.0158 20 14 14.7168 6.2555 -0.0244 21 1 15.3601 4.9170 -0.0221 22 1 15.1281 7.0008 -1.2412 23 1 15.1387 7.0089 1.1837 24 6 10.2539 3.4504 -0.0067 25 7 5.6040 0.9465 -0.0071 26 7 4.4569 0.3702 -0.0002 27 1 4.3267 -0.5910 0.0003 28 6 3.4395 1.2893 -0.0001 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 0.2195 2.3139 -0.0005 33 1 1.3180 4.5127 -0.0019 34 1 3.7565 4.6815 -0.0025 35 1 8.0708 1.8585 -0.0047 36 1 7.8624 5.6868 -0.0053 37 1 12.4758 8.0009 -0.0201 38 1 10.6911 2.4629 -0.0066 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809149801.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:27 Heat of formation + Delta-G solvation = 82.975947 kcal Electronic energy + Delta-G solvation = -25905.026302 eV Core-core repulsion = 21943.709340 eV Total energy + Delta-G solvation = -3961.316962 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.60835 -41.66711 -40.48021 -39.95307 -37.78143 -35.94083 -34.99174 -33.26583 -32.20299 -31.50802 -30.49982 -29.50613 -28.18100 -27.00741 -25.21527 -23.95158 -23.34895 -22.82997 -21.52794 -21.13295 -19.82750 -19.38820 -18.62460 -18.05254 -17.42353 -17.22140 -17.09308 -16.84802 -16.43693 -16.15742 -15.82753 -15.76093 -15.71909 -15.06128 -14.96115 -14.79978 -14.47934 -13.49086 -13.37747 -13.30702 -13.24847 -12.92406 -12.85509 -12.64932 -12.26158 -12.13161 -12.12699 -12.01302 -11.89450 -11.03870 -11.03050 -10.86726 -10.80169 -10.08775 -9.92986 -8.78611 -8.49345 -8.45611 -6.22488 -0.27586 0.22573 0.75626 1.30614 1.41285 1.59322 1.61206 1.73862 1.96637 2.07113 2.15798 2.31754 2.55909 2.74553 2.86535 3.10633 3.23665 3.41768 3.80821 3.94151 4.14300 4.29710 4.40793 4.45619 4.47045 4.47752 4.60813 4.72120 4.81501 5.00857 5.02843 5.08487 5.29427 5.33024 5.41614 5.52789 5.63315 5.88019 5.97161 6.28139 6.30927 6.55130 6.73117 6.78390 7.27072 7.46917 7.68263 8.54129 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.042321 B = 0.002210 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.449839 B =12668.509465 C =13314.800897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.133 3.867 4 C -0.177 4.177 5 C -0.085 4.085 6 C -0.111 4.111 7 C -0.093 4.093 8 C -0.021 4.021 9 C 0.590 3.410 10 O -0.557 6.557 11 N -0.602 5.602 12 C -0.046 4.046 13 C -0.054 4.054 14 N -0.307 5.307 15 N -0.166 5.166 16 C -0.352 4.352 17 H 0.142 0.858 18 C -0.008 4.008 19 N -0.824 5.824 20 Si 1.021 2.979 21 H -0.241 1.241 22 H -0.272 1.272 23 H -0.272 1.272 24 C -0.078 4.078 25 N -0.193 5.193 26 N -0.384 5.384 27 H 0.464 0.536 28 C 0.031 3.969 29 H 0.120 0.880 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.174 0.826 33 H 0.162 0.838 34 H 0.124 0.876 35 H 0.419 0.581 36 H 0.171 0.829 37 H 0.277 0.723 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.215 -16.496 0.013 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.085 3.915 4 C -0.198 4.198 5 C -0.103 4.103 6 C -0.131 4.131 7 C -0.100 4.100 8 C -0.190 4.190 9 C 0.376 3.624 10 O -0.434 6.434 11 N -0.245 5.245 12 C -0.153 4.153 13 C -0.230 4.230 14 N -0.139 5.139 15 N 0.065 4.935 16 C -0.484 4.484 17 H 0.159 0.841 18 C -0.219 4.219 19 N -0.452 5.452 20 Si 0.839 3.161 21 H -0.163 1.163 22 H -0.198 1.198 23 H -0.198 1.198 24 C -0.228 4.228 25 N -0.026 5.026 26 N -0.107 5.107 27 H 0.313 0.687 28 C -0.082 4.082 29 H 0.138 0.862 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.191 0.809 33 H 0.180 0.820 34 H 0.142 0.858 35 H 0.256 0.744 36 H 0.188 0.812 37 H 0.087 0.913 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -20.858 -15.396 0.010 25.925 hybrid contribution -0.392 -0.555 -0.006 0.680 sum -21.250 -15.952 0.004 26.571 Atomic orbital electron populations 1.23443 0.75425 1.05955 1.02896 1.86006 1.24258 1.25524 1.88767 1.17825 0.86897 0.86563 1.00218 1.21422 1.01625 0.90278 1.06472 1.20950 0.92991 0.98822 0.97579 1.20408 0.94270 0.96884 1.01580 1.19401 0.90727 0.94004 1.05885 1.22300 0.92747 0.89623 1.14286 1.16812 0.81248 0.86619 0.77751 1.90670 1.83786 1.16924 1.51990 1.42194 1.02863 1.09185 1.70304 1.17307 0.86993 0.89142 1.21811 1.24198 0.96947 0.92864 1.08962 1.78145 0.96125 1.12215 1.27442 1.44851 1.05811 1.02586 1.40273 1.20674 0.77389 0.96407 1.53881 0.84117 1.26906 1.06797 0.94080 0.94161 1.70402 1.38299 0.99201 1.37261 0.84517 0.73324 0.80033 0.78190 1.16344 1.19758 1.19757 1.21957 0.90471 0.92455 1.17927 1.72830 1.09239 1.08328 1.12210 1.42988 0.99736 1.10153 1.57873 0.68676 1.18465 0.89524 0.89505 1.10718 0.86154 0.91081 0.91077 0.80869 0.82019 0.85800 0.74354 0.81181 0.91350 0.79512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 113.37 1.11 1.20 16 2 O -0.33 -4.67 10.51 -92.61 -0.97 -5.65 16 3 C 0.13 2.43 6.70 22.58 0.15 2.58 16 4 C -0.18 -2.60 9.03 22.40 0.20 -2.40 16 5 C -0.08 -1.53 9.97 22.05 0.22 -1.31 16 6 C -0.11 -2.98 9.86 22.16 0.22 -2.76 16 7 C -0.09 -2.76 6.33 -20.15 -0.13 -2.89 16 8 C -0.02 -0.69 7.32 43.85 0.32 -0.37 16 9 C 0.59 23.82 7.78 86.64 0.67 24.49 16 10 O -0.56 -26.10 13.52 -4.17 -0.06 -26.15 16 11 N -0.60 -23.74 5.46 -306.92 -1.68 -25.42 16 12 C -0.05 -2.26 6.90 37.75 0.26 -2.00 16 13 C -0.05 -3.07 10.85 85.43 0.93 -2.14 16 14 N -0.31 -18.98 10.39 -56.46 -0.59 -19.57 16 15 N -0.17 -9.48 3.74 -190.00 -0.71 -10.19 16 16 C -0.35 -19.01 10.25 84.01 0.86 -18.15 16 17 H 0.14 6.59 7.83 -2.91 -0.02 6.56 16 18 C -0.01 -0.42 5.50 84.95 0.47 0.05 16 19 N -0.82 -48.25 11.81 21.66 0.26 -48.00 16 20 Si 1.02 39.22 29.55 68.60 2.03 41.25 16 21 H -0.24 -8.28 7.11 99.48 0.71 -7.57 16 22 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 23 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 24 C -0.08 -3.75 11.49 83.38 0.96 -2.79 16 25 N -0.19 -5.25 11.80 -44.88 -0.53 -5.78 16 26 N -0.38 -8.24 6.85 -51.37 -0.35 -8.59 16 27 H 0.46 6.37 8.96 -220.03 -1.97 4.40 16 28 C 0.03 0.74 7.32 39.25 0.29 1.03 16 29 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.07 0.23 7.66 -2.39 -0.02 0.21 16 31 H 0.07 0.23 7.66 -2.39 -0.02 0.21 16 32 H 0.17 1.17 6.27 -2.91 -0.02 1.16 16 33 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.12 3.73 7.62 -2.91 -0.02 3.71 16 35 H 0.42 13.46 8.56 -92.71 -0.79 12.67 16 36 H 0.17 9.60 5.91 -2.91 -0.02 9.58 16 37 H 0.28 14.83 8.31 -92.71 -0.77 14.06 16 38 H 0.19 7.19 8.06 -2.91 -0.02 7.16 16 Total: -1.00 -80.86 337.14 2.33 -78.52 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: -1.60 Total: 35.03 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 6.53 Total: -5.46 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -3.60 Total: -117.54 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -1.03 Total: -31.80 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -80.86 2.33 -78.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809149801.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.497 kcal (2) G-P(sol) polarization free energy of solvation -80.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds