Wall clock time and date at job start Tue Mar 31 2020 15:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46940 * 2 1 4 4 O 1.45201 * 109.47535 * 240.00060 * 2 1 3 5 5 C 1.34227 * 117.00008 * 89.99652 * 4 2 1 6 6 O 1.20832 * 119.99781 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99921 * 179.97438 * 5 4 2 8 8 C 1.53004 * 109.46737 * 180.02562 * 7 5 4 9 9 C 1.50709 * 109.46620 * 180.02562 * 8 7 5 10 10 H 1.07996 * 119.99874 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99922 * 180.02562 * 9 8 7 12 12 N 1.31507 * 119.99955 * 179.97438 * 11 9 8 13 13 Si 1.86808 * 119.99940 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47199 * 89.99539 * 13 11 9 15 15 H 1.48497 * 109.46918 * 210.00475 * 13 11 9 16 16 H 1.48504 * 109.46882 * 329.99855 * 13 11 9 17 17 C 1.50704 * 109.47142 * 119.99967 * 2 1 3 18 18 O 1.21281 * 120.00092 * 115.00231 * 17 2 1 19 19 N 1.34782 * 119.99713 * 295.00118 * 17 2 1 20 20 C 1.40037 * 119.99680 * 175.54180 * 19 17 2 21 21 C 1.38797 * 120.06743 * 34.63341 * 20 19 17 22 22 C 1.38341 * 119.93044 * 179.76610 * 21 20 19 23 23 F 1.35104 * 119.96952 * 180.27639 * 22 21 20 24 24 C 1.38490 * 120.06125 * 0.51124 * 22 21 20 25 25 C 1.38253 * 120.13443 * 359.74646 * 24 22 21 26 26 C 1.38306 * 120.06300 * 359.97438 * 25 24 22 27 27 F 1.35101 * 120.02748 * 179.97438 * 26 25 24 28 28 H 1.09004 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46700 * 59.99998 * 1 2 3 30 30 H 1.08993 * 109.47129 * 300.00370 * 1 2 3 31 31 H 1.08994 * 109.47351 * 299.99991 * 7 5 4 32 32 H 1.08997 * 109.46713 * 60.00541 * 7 5 4 33 33 H 1.09001 * 109.47298 * 299.99660 * 8 7 5 34 34 H 1.08997 * 109.47231 * 60.00670 * 8 7 5 35 35 H 0.97001 * 119.99800 * 179.97438 * 12 11 9 36 36 H 0.97003 * 120.00229 * 355.54367 * 19 17 2 37 37 H 1.08003 * 120.03429 * 0.02562 * 21 20 19 38 38 H 1.08000 * 119.93405 * 179.71749 * 24 22 21 39 39 H 1.07997 * 119.97201 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6845 -1.1855 5 6 2.2172 0.0640 -2.2811 6 8 1.9982 1.2519 -2.2503 7 6 2.7195 -0.5770 -3.5491 8 6 2.8645 0.4893 -4.6367 9 6 3.3662 -0.1519 -5.9050 10 1 3.5624 -1.2135 -5.9323 11 6 3.5758 0.6171 -7.0301 12 7 4.0140 0.0577 -8.1366 13 14 3.2371 2.4536 -6.9826 14 1 4.4671 3.1732 -6.5649 15 1 2.8270 2.9164 -8.3327 16 1 2.1477 2.7311 -6.0122 17 6 2.0323 -0.7104 1.2305 18 8 2.6530 -1.7467 1.1215 19 7 1.7918 -0.1941 2.4521 20 6 2.1763 -0.9002 3.5987 21 6 3.3349 -1.6644 3.5889 22 6 3.7146 -2.3569 4.7247 23 9 4.8452 -3.0964 4.7179 24 6 2.9343 -2.2966 5.8673 25 6 1.7769 -1.5405 5.8782 26 6 1.3953 -0.8414 4.7475 27 9 0.2638 -0.1032 4.7588 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 3.6886 -1.0398 -3.3631 32 1 2.0107 -1.3372 -3.8773 33 1 1.8956 0.9525 -4.8230 34 1 3.5735 1.2492 -4.3083 35 1 4.1611 0.5987 -8.9282 36 1 1.3524 0.6665 2.5370 37 1 3.9417 -1.7149 2.6968 38 1 3.2303 -2.8417 6.7514 39 1 1.1701 -1.4957 6.7705 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812617533.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:08 Heat of formation + Delta-G solvation = -186.478848 kcal Electronic energy + Delta-G solvation = -26657.671060 eV Core-core repulsion = 22201.687724 eV Total energy + Delta-G solvation = -4455.983336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.45761 -49.31464 -41.21607 -40.16901 -38.70312 -36.48086 -35.38052 -33.69271 -32.58012 -31.39181 -30.85969 -29.76019 -26.68908 -25.39171 -23.97530 -23.04285 -21.97642 -20.84906 -19.93550 -19.11453 -18.15147 -17.95627 -17.64363 -17.15119 -16.81157 -16.38394 -16.34745 -16.16901 -15.80160 -15.64151 -15.17828 -14.87346 -14.47513 -14.31514 -14.06596 -13.86221 -13.62421 -13.31381 -13.12506 -12.82260 -12.67713 -12.59661 -12.42573 -12.06674 -11.84320 -11.50864 -11.07028 -11.04306 -10.87738 -10.39608 -10.25765 -10.15016 -10.00375 -9.76782 -9.33990 -9.29148 -8.78264 -8.58421 -6.09404 -4.09649 0.34185 0.49350 1.92118 2.00431 2.52475 2.86421 2.99175 3.31692 3.38814 3.46567 3.54961 3.69447 3.98623 4.11705 4.38490 4.43322 4.50289 4.57373 4.64201 4.82240 4.94537 5.24963 5.25196 5.33907 5.37682 5.39216 5.48298 5.60242 5.69709 5.74261 5.94555 5.96293 6.28671 6.34024 6.60611 6.66382 7.18189 7.25833 7.48720 7.66862 8.02914 8.44084 8.93126 9.51830 11.03157 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.023505 B = 0.002255 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.953639 B =12416.377661 C =13214.248726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.070 3.930 3 H 0.115 0.885 4 O -0.334 6.334 5 C 0.460 3.540 6 O -0.508 6.508 7 C -0.094 4.094 8 C -0.001 4.001 9 C -0.528 4.528 10 H 0.076 0.924 11 C 0.071 3.929 12 N -0.899 5.899 13 Si 0.878 3.122 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.262 1.262 17 C 0.522 3.478 18 O -0.487 6.487 19 N -0.669 5.669 20 C 0.150 3.850 21 C -0.134 4.134 22 C 0.114 3.886 23 F -0.129 7.129 24 C -0.142 4.142 25 C -0.104 4.104 26 C 0.062 3.938 27 F -0.132 7.132 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.026 0.974 34 H 0.021 0.979 35 H 0.265 0.735 36 H 0.419 0.581 37 H 0.164 0.836 38 H 0.148 0.852 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.905 -1.412 31.530 32.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 H 0.132 0.868 4 O -0.250 6.250 5 C 0.305 3.695 6 O -0.395 6.395 7 C -0.132 4.132 8 C -0.039 4.039 9 C -0.566 4.566 10 H 0.094 0.906 11 C -0.131 4.131 12 N -0.537 5.537 13 Si 0.705 3.295 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.186 1.186 17 C 0.308 3.692 18 O -0.358 6.358 19 N -0.317 5.317 20 C 0.054 3.946 21 C -0.155 4.155 22 C 0.094 3.906 23 F -0.107 7.107 24 C -0.161 4.161 25 C -0.124 4.124 26 C 0.040 3.960 27 F -0.110 7.110 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.256 0.744 37 H 0.181 0.819 38 H 0.166 0.834 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.501 -1.756 31.170 31.889 hybrid contribution -0.394 1.525 0.021 1.576 sum -6.896 -0.231 31.191 31.945 Atomic orbital electron populations 1.22171 0.91447 1.04299 1.04380 1.22220 0.96207 0.97668 0.82832 0.86782 1.86746 1.77361 1.41803 1.19133 1.24983 0.73314 0.86300 0.84953 1.90617 1.48184 1.16911 1.83812 1.21594 1.02755 1.01481 0.87326 1.19497 0.97968 0.93686 0.92728 1.21020 1.44919 0.96939 0.93701 0.90575 1.24959 0.94278 0.98639 0.95240 1.69900 1.45713 1.36229 1.01901 0.86799 0.79564 0.85761 0.77425 1.20172 1.21299 1.18626 1.20576 0.79402 0.85428 0.83772 1.90763 1.36833 1.22418 1.85743 1.43300 1.61344 1.23478 1.03567 1.17337 0.93485 0.97667 0.86091 1.21226 0.96164 0.98603 0.99509 1.17460 0.84645 0.94075 0.94411 1.91554 1.48013 1.74224 1.96956 1.21021 0.95073 1.01721 0.98298 1.20824 0.97367 0.96641 0.97539 1.17437 0.84933 0.98402 0.95184 1.91513 1.47790 1.74724 1.97010 0.90623 0.89843 0.90337 0.88000 0.87989 0.95552 0.96028 0.92562 0.74362 0.81862 0.83408 0.83095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 9.50 37.16 0.35 -1.19 16 2 C 0.07 0.83 2.98 -27.88 -0.08 0.75 16 3 H 0.11 1.27 7.16 -51.93 -0.37 0.90 16 4 O -0.33 -5.26 9.42 -45.88 -0.43 -5.69 16 5 C 0.46 8.23 7.93 36.01 0.29 8.52 16 6 O -0.51 -9.98 15.20 -18.76 -0.29 -10.26 16 7 C -0.09 -1.81 5.75 -27.88 -0.16 -1.97 16 8 C 0.00 -0.03 3.33 -27.88 -0.09 -0.12 16 9 C -0.53 -14.76 9.66 -34.44 -0.33 -15.09 16 10 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 13 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 17 C 0.52 6.08 7.03 -10.98 -0.08 6.01 16 18 O -0.49 -7.38 13.93 -14.05 -0.20 -7.58 16 19 N -0.67 -5.71 5.19 -9.81 -0.05 -5.76 16 20 C 0.15 1.36 6.31 -83.60 -0.53 0.83 16 21 C -0.13 -1.35 8.68 -39.34 -0.34 -1.69 16 22 C 0.11 1.01 7.29 -39.45 -0.29 0.72 16 23 F -0.13 -1.29 17.27 2.25 0.04 -1.25 16 24 C -0.14 -0.88 10.02 -39.48 -0.40 -1.27 16 25 C -0.10 -0.60 10.02 -39.55 -0.40 -0.99 16 26 C 0.06 0.47 7.31 -39.26 -0.29 0.18 16 27 F -0.13 -1.00 16.96 2.25 0.04 -0.96 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.48 8.08 -51.93 -0.42 0.07 16 31 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 32 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 33 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 34 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.42 2.34 8.60 -40.82 -0.35 1.99 16 37 H 0.16 1.93 6.20 -52.48 -0.33 1.61 16 38 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 39 H 0.15 0.47 8.06 -52.49 -0.42 0.04 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -34.05 351.12 -6.28 -40.33 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -4.35 Total: -1.29 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -2.44 Total: -3.38 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.72 Total: -32.41 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.91 Total: -23.53 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.08 Total: -2.21 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.05 -6.28 -40.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617533.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.146 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds