Wall clock time and date at job start Tue Mar 31 2020 15:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46940 * 2 1 4 4 O 1.45201 * 109.47535 * 240.00060 * 2 1 3 5 5 C 1.34227 * 117.00008 * 89.99652 * 4 2 1 6 6 O 1.20832 * 119.99781 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99921 * 179.97438 * 5 4 2 8 8 C 1.53004 * 109.46737 * 180.02562 * 7 5 4 9 9 C 1.50709 * 109.46620 * 180.02562 * 8 7 5 10 10 H 1.07996 * 119.99874 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99922 * 180.02562 * 9 8 7 12 12 N 1.31507 * 119.99955 * 179.97438 * 11 9 8 13 13 Si 1.86808 * 119.99940 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47199 * 89.99539 * 13 11 9 15 15 H 1.48497 * 109.46918 * 210.00475 * 13 11 9 16 16 H 1.48504 * 109.46882 * 329.99855 * 13 11 9 17 17 C 1.50704 * 109.47142 * 119.99967 * 2 1 3 18 18 O 1.21281 * 120.00092 * 115.00231 * 17 2 1 19 19 N 1.34782 * 119.99713 * 295.00118 * 17 2 1 20 20 C 1.40037 * 119.99680 * 175.54180 * 19 17 2 21 21 C 1.38797 * 120.06743 * 34.63341 * 20 19 17 22 22 C 1.38341 * 119.93044 * 179.76610 * 21 20 19 23 23 F 1.35104 * 119.96952 * 180.27639 * 22 21 20 24 24 C 1.38490 * 120.06125 * 0.51124 * 22 21 20 25 25 C 1.38253 * 120.13443 * 359.74646 * 24 22 21 26 26 C 1.38306 * 120.06300 * 359.97438 * 25 24 22 27 27 F 1.35101 * 120.02748 * 179.97438 * 26 25 24 28 28 H 1.09004 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46700 * 59.99998 * 1 2 3 30 30 H 1.08993 * 109.47129 * 300.00370 * 1 2 3 31 31 H 1.08994 * 109.47351 * 299.99991 * 7 5 4 32 32 H 1.08997 * 109.46713 * 60.00541 * 7 5 4 33 33 H 1.09001 * 109.47298 * 299.99660 * 8 7 5 34 34 H 1.08997 * 109.47231 * 60.00670 * 8 7 5 35 35 H 0.97001 * 119.99800 * 179.97438 * 12 11 9 36 36 H 0.97003 * 120.00229 * 355.54367 * 19 17 2 37 37 H 1.08003 * 120.03429 * 0.02562 * 21 20 19 38 38 H 1.08000 * 119.93405 * 179.71749 * 24 22 21 39 39 H 1.07997 * 119.97201 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6845 -1.1855 5 6 2.2172 0.0640 -2.2811 6 8 1.9982 1.2519 -2.2503 7 6 2.7195 -0.5770 -3.5491 8 6 2.8645 0.4893 -4.6367 9 6 3.3662 -0.1519 -5.9050 10 1 3.5624 -1.2135 -5.9323 11 6 3.5758 0.6171 -7.0301 12 7 4.0140 0.0577 -8.1366 13 14 3.2371 2.4536 -6.9826 14 1 4.4671 3.1732 -6.5649 15 1 2.8270 2.9164 -8.3327 16 1 2.1477 2.7311 -6.0122 17 6 2.0323 -0.7104 1.2305 18 8 2.6530 -1.7467 1.1215 19 7 1.7918 -0.1941 2.4521 20 6 2.1763 -0.9002 3.5987 21 6 3.3349 -1.6644 3.5889 22 6 3.7146 -2.3569 4.7247 23 9 4.8452 -3.0964 4.7179 24 6 2.9343 -2.2966 5.8673 25 6 1.7769 -1.5405 5.8782 26 6 1.3953 -0.8414 4.7475 27 9 0.2638 -0.1032 4.7588 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 3.6886 -1.0398 -3.3631 32 1 2.0107 -1.3372 -3.8773 33 1 1.8956 0.9525 -4.8230 34 1 3.5735 1.2492 -4.3083 35 1 4.1611 0.5987 -8.9282 36 1 1.3524 0.6665 2.5370 37 1 3.9417 -1.7149 2.6968 38 1 3.2303 -2.8417 6.7514 39 1 1.1701 -1.4957 6.7705 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617533.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:07 Heat of formation + Delta-G solvation = -206.919106 kcal Electronic energy + Delta-G solvation = -26658.557416 eV Core-core repulsion = 22201.687724 eV Total energy + Delta-G solvation = -4456.869692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.04148 -50.02016 -42.20970 -41.32328 -39.46941 -37.77470 -36.19623 -35.65219 -33.74207 -33.11914 -31.51233 -30.42254 -28.49292 -26.29424 -24.80986 -23.92800 -23.30933 -21.85131 -21.42981 -19.87582 -19.51101 -18.75205 -18.57788 -18.44981 -17.88646 -17.46062 -17.31853 -17.05028 -16.65058 -16.44454 -16.35600 -16.19200 -15.48131 -15.42033 -15.06850 -15.03211 -14.81406 -14.41557 -14.22783 -14.03150 -13.72515 -13.49441 -13.41160 -13.24147 -12.96184 -12.85666 -12.58455 -12.28619 -12.06823 -11.99968 -11.80110 -11.72710 -11.55145 -11.42915 -11.05713 -10.79265 -9.98529 -9.42410 -8.31782 -6.36769 -0.28239 -0.10943 0.97174 1.08653 1.16730 1.35595 1.37239 1.50658 1.94599 2.26590 2.34720 2.93809 3.00708 3.03487 3.24409 3.53867 3.61230 3.72528 3.79957 3.86255 3.98509 4.21669 4.26317 4.35314 4.52252 4.55809 4.67079 4.80702 4.87141 4.93015 4.98616 4.99562 5.01244 5.16784 5.28018 5.35000 5.57178 5.67686 5.93583 6.20690 6.61175 6.68355 6.73510 7.28257 8.83917 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.023505 B = 0.002255 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.953639 B =12416.377661 C =13214.248726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.063 3.937 3 H 0.125 0.875 4 O -0.341 6.341 5 C 0.474 3.526 6 O -0.527 6.527 7 C -0.093 4.093 8 C 0.004 3.996 9 C -0.534 4.534 10 H 0.048 0.952 11 C 0.012 3.988 12 N -0.944 5.944 13 Si 0.943 3.057 14 H -0.268 1.268 15 H -0.280 1.280 16 H -0.253 1.253 17 C 0.526 3.474 18 O -0.529 6.529 19 N -0.652 5.652 20 C 0.132 3.868 21 C -0.153 4.153 22 C 0.096 3.904 23 F -0.141 7.141 24 C -0.125 4.125 25 C -0.091 4.091 26 C 0.067 3.933 27 F -0.129 7.129 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.023 0.977 34 H 0.018 0.982 35 H 0.268 0.732 36 H 0.434 0.566 37 H 0.137 0.863 38 H 0.179 0.821 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.593 -0.163 34.730 35.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.005 3.995 3 H 0.142 0.858 4 O -0.257 6.257 5 C 0.318 3.682 6 O -0.416 6.416 7 C -0.130 4.130 8 C -0.033 4.033 9 C -0.572 4.572 10 H 0.066 0.934 11 C -0.186 4.186 12 N -0.584 5.584 13 Si 0.767 3.233 14 H -0.193 1.193 15 H -0.205 1.205 16 H -0.177 1.177 17 C 0.313 3.687 18 O -0.404 6.404 19 N -0.301 5.301 20 C 0.037 3.963 21 C -0.175 4.175 22 C 0.076 3.924 23 F -0.120 7.120 24 C -0.144 4.144 25 C -0.110 4.110 26 C 0.045 3.955 27 F -0.108 7.108 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.041 0.959 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.274 0.726 37 H 0.155 0.845 38 H 0.196 0.804 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -8.211 -0.493 34.422 35.391 hybrid contribution 0.123 1.042 -0.831 1.339 sum -8.088 0.549 33.591 34.555 Atomic orbital electron populations 1.22203 0.89143 1.04634 1.05796 1.22615 0.97989 0.97675 0.81246 0.85762 1.86674 1.77241 1.42006 1.19803 1.24360 0.72937 0.85717 0.85152 1.90604 1.49163 1.17502 1.84310 1.21365 1.03869 1.00411 0.87382 1.19325 0.97183 0.94509 0.92330 1.21342 1.44319 0.95975 0.95564 0.93406 1.25862 0.94235 1.03605 0.94896 1.70031 1.47346 1.38192 1.02804 0.85764 0.79846 0.79874 0.77861 1.19328 1.20537 1.17659 1.20527 0.78827 0.84811 0.84516 1.90760 1.38891 1.24346 1.86379 1.43071 1.60535 1.23834 1.02630 1.17418 0.93834 0.98386 0.86676 1.21092 0.96906 1.00144 0.99318 1.17711 0.84973 0.94493 0.95194 1.91520 1.48808 1.74611 1.97058 1.21356 0.94203 1.00842 0.98000 1.21240 0.97004 0.94804 0.97910 1.17525 0.84642 0.98324 0.95036 1.91526 1.47582 1.74678 1.96989 0.90826 0.90621 0.86679 0.87304 0.86784 0.95858 0.96333 0.92292 0.72597 0.84525 0.80390 0.79514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.50 71.98 0.68 -1.99 16 2 C 0.06 1.43 2.98 29.85 0.09 1.52 16 3 H 0.12 2.59 7.16 -2.39 -0.02 2.57 16 4 O -0.34 -10.60 9.42 -45.05 -0.42 -11.02 16 5 C 0.47 16.63 7.93 71.24 0.56 17.20 16 6 O -0.53 -20.11 15.20 21.94 0.33 -19.78 16 7 C -0.09 -3.56 5.75 29.85 0.17 -3.39 16 8 C 0.00 0.19 3.33 29.85 0.10 0.29 16 9 C -0.53 -30.36 9.66 25.60 0.25 -30.11 16 10 H 0.05 2.91 7.99 -2.91 -0.02 2.88 16 11 C 0.01 0.69 5.47 84.66 0.46 1.15 16 12 N -0.94 -58.67 13.96 21.45 0.30 -58.37 16 13 Si 0.94 45.01 27.47 68.60 1.88 46.89 16 14 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 15 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 16 H -0.25 -11.61 6.54 99.48 0.65 -10.96 16 17 C 0.53 12.07 7.03 87.66 0.62 12.69 16 18 O -0.53 -16.55 13.93 15.71 0.22 -16.33 16 19 N -0.65 -10.36 5.19 -303.34 -1.57 -11.93 16 20 C 0.13 2.26 6.31 38.16 0.24 2.50 16 21 C -0.15 -3.15 8.68 22.43 0.19 -2.96 16 22 C 0.10 1.64 7.29 22.35 0.16 1.80 16 23 F -0.14 -2.85 17.27 44.97 0.78 -2.07 16 24 C -0.12 -1.18 10.02 22.33 0.22 -0.96 16 25 C -0.09 -0.70 10.02 22.29 0.22 -0.48 16 26 C 0.07 0.82 7.31 22.48 0.16 0.99 16 27 F -0.13 -1.54 16.96 44.97 0.76 -0.78 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.11 1.05 8.08 -2.39 -0.02 1.03 16 31 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 32 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 33 H 0.02 1.11 7.16 -2.39 -0.02 1.10 16 34 H 0.02 0.88 7.53 -2.39 -0.02 0.87 16 35 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 36 H 0.43 3.94 8.60 -92.71 -0.80 3.14 16 37 H 0.14 3.53 6.20 -2.91 -0.02 3.51 16 38 H 0.18 0.61 8.06 -2.91 -0.02 0.58 16 39 H 0.19 0.15 8.06 -2.91 -0.02 0.12 16 Total: -1.00 -75.42 351.12 6.68 -68.74 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 0.26 Total: 6.39 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 4.15 Total: -1.74 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -1.27 Total: -70.30 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: 0.13 Total: -47.13 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 1.54 Total: -2.85 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.89 kcal Total: -75.42 6.68 -68.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617533.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.183 kcal (2) G-P(sol) polarization free energy of solvation -75.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds