Wall clock time and date at job start Tue Mar 31 2020 15:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47114 * 2 1 4 4 O 1.45202 * 109.46873 * 119.99542 * 2 1 3 5 5 C 1.34230 * 117.00235 * 269.99978 * 4 2 1 6 6 O 1.20825 * 119.99942 * 0.02562 * 5 4 2 7 7 C 1.50695 * 120.00143 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.47004 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.46727 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00790 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99991 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99608 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00243 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46959 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47023 * 120.00071 * 13 11 9 16 16 H 1.48498 * 109.47277 * 239.99931 * 13 11 9 17 17 C 1.50699 * 109.47462 * 239.99860 * 2 1 3 18 18 O 1.21298 * 119.99904 * 245.00112 * 17 2 1 19 19 N 1.34778 * 119.99907 * 64.99891 * 17 2 1 20 20 C 1.40147 * 119.99571 * 175.84338 * 19 17 2 21 21 C 1.38786 * 120.05514 * 34.62164 * 20 19 17 22 22 C 1.38150 * 119.97871 * 179.72254 * 21 20 19 23 23 C 1.38475 * 120.08305 * 0.54422 * 22 21 20 24 24 F 1.35094 * 119.94591 * 179.74722 * 23 22 21 25 25 C 1.38455 * 120.10589 * 359.73071 * 23 22 21 26 26 C 1.38300 * 120.02288 * 359.97438 * 25 23 22 27 27 F 1.35108 * 120.04353 * 179.97438 * 26 25 23 28 28 H 1.08999 * 109.47114 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47455 * 300.00173 * 1 2 3 30 30 H 1.09003 * 109.47440 * 60.00330 * 1 2 3 31 31 H 1.08997 * 109.47044 * 300.00383 * 7 5 4 32 32 H 1.09009 * 109.46739 * 60.00315 * 7 5 4 33 33 H 1.08997 * 109.47472 * 300.00046 * 8 7 5 34 34 H 1.08996 * 109.47436 * 60.00470 * 8 7 5 35 35 H 0.96998 * 119.99642 * 179.97438 * 12 11 9 36 36 H 0.96995 * 120.00011 * 355.56357 * 19 17 2 37 37 H 1.08002 * 120.01303 * 359.97242 * 21 20 19 38 38 H 1.08002 * 119.95400 * 180.27441 * 22 21 20 39 39 H 1.08003 * 119.98837 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6844 1.1856 5 6 2.2170 0.0641 2.2812 6 8 1.9973 1.2518 2.2506 7 6 2.7180 -0.5770 3.5496 8 6 2.8621 0.4891 4.6375 9 6 3.3638 -0.1520 5.9057 10 1 3.5606 -1.2135 5.9330 11 6 3.5726 0.6169 7.0310 12 7 3.3334 1.9098 6.9977 13 14 4.1937 -0.1778 8.6033 14 1 4.3828 -1.6338 8.3806 15 1 5.4896 0.4359 8.9896 16 1 3.2030 0.0328 9.6892 17 6 2.0324 -0.7104 -1.2304 18 8 2.6531 -1.7468 -1.1213 19 7 1.7919 -0.1942 -2.4520 20 6 2.3328 -0.8070 -3.5904 21 6 2.4674 -2.1875 -3.6391 22 6 2.9955 -2.7903 -4.7644 23 6 3.4013 -2.0181 -5.8398 24 9 3.9220 -2.6102 -6.9368 25 6 3.2739 -0.6402 -5.7927 26 6 2.7402 -0.0326 -4.6709 27 9 2.6161 1.3120 -4.6243 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.0085 -1.3367 3.8775 32 1 3.6870 -1.0407 3.3641 33 1 3.5715 1.2491 4.3098 34 1 1.8931 0.9524 4.8228 35 1 3.4799 2.4506 7.7894 36 1 1.2413 0.5990 -2.5435 37 1 2.1557 -2.7906 -2.7991 38 1 3.0960 -3.8649 -4.8035 39 1 3.5906 -0.0398 -6.6328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618323.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:11 Heat of formation + Delta-G solvation = -190.051369 kcal Electronic energy + Delta-G solvation = -26467.491552 eV Core-core repulsion = 22011.353300 eV Total energy + Delta-G solvation = -4456.138252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.48914 -49.38920 -41.14174 -40.05913 -38.63065 -36.33578 -35.25154 -33.64311 -32.43341 -31.34898 -31.05318 -29.41490 -26.27240 -25.15494 -24.01543 -23.16307 -22.14669 -20.77679 -19.92967 -19.00230 -18.42309 -17.86505 -17.44517 -17.09236 -16.51787 -16.31553 -16.12481 -16.07953 -15.74738 -15.57793 -15.22227 -14.94290 -14.56138 -14.47730 -14.15628 -13.82249 -13.39061 -13.18106 -12.92436 -12.77789 -12.58135 -12.38780 -12.24710 -12.11447 -11.75030 -11.26142 -11.00037 -10.83461 -10.79288 -10.64196 -10.13331 -10.09708 -10.02280 -9.62744 -9.52594 -9.19874 -8.63746 -8.40823 -6.04600 -4.09310 0.36605 0.51488 1.98272 2.09853 2.67289 2.90628 3.10464 3.29477 3.36896 3.37335 3.41052 3.82934 4.02120 4.15420 4.37302 4.42193 4.57535 4.63631 4.73105 4.90170 5.02348 5.23271 5.31197 5.38244 5.40780 5.47773 5.54509 5.63326 5.77699 5.80040 6.07354 6.14614 6.30418 6.47727 6.71794 6.80931 7.55768 7.62843 7.68362 7.94275 8.13525 8.32677 8.97808 9.55028 11.06438 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.025379 B = 0.002034 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.020580 B =13764.133102 C =14163.379170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.069 3.931 3 H 0.114 0.886 4 O -0.337 6.337 5 C 0.459 3.541 6 O -0.502 6.502 7 C -0.102 4.102 8 C 0.033 3.967 9 C -0.528 4.528 10 H 0.060 0.940 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.523 3.477 18 O -0.491 6.491 19 N -0.669 5.669 20 C 0.110 3.890 21 C -0.066 4.066 22 C -0.141 4.141 23 C 0.114 3.886 24 F -0.131 7.131 25 C -0.173 4.173 26 C 0.104 3.896 27 F -0.127 7.127 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.261 0.739 36 H 0.417 0.583 37 H 0.162 0.838 38 H 0.148 0.852 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.483 -6.146 -27.468 28.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.010 3.990 3 H 0.132 0.868 4 O -0.254 6.254 5 C 0.303 3.697 6 O -0.388 6.388 7 C -0.139 4.139 8 C -0.004 4.004 9 C -0.566 4.566 10 H 0.078 0.922 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.724 3.276 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.310 3.690 18 O -0.362 6.362 19 N -0.317 5.317 20 C 0.015 3.985 21 C -0.086 4.086 22 C -0.160 4.160 23 C 0.094 3.906 24 F -0.110 7.110 25 C -0.193 4.193 26 C 0.082 3.918 27 F -0.105 7.105 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.254 0.746 37 H 0.180 0.820 38 H 0.166 0.834 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.089 -6.315 -27.240 28.422 hybrid contribution 0.155 0.489 0.499 0.715 sum -4.934 -5.826 -26.741 27.810 Atomic orbital electron populations 1.22174 0.91613 1.04157 1.04367 1.22207 0.96078 0.97795 0.82942 0.86807 1.86743 1.77531 1.41950 1.19151 1.25011 0.73495 0.86414 0.84819 1.90633 1.47720 1.16844 1.83643 1.21816 1.02004 1.02090 0.88002 1.19040 0.98601 0.92422 0.90347 1.21188 1.44973 0.94815 0.95638 0.92178 1.25028 0.95464 0.94826 0.99057 1.70001 1.48372 1.05026 1.29401 0.86475 0.78486 0.79537 0.83132 1.19611 1.20957 1.20958 1.20565 0.79225 0.85506 0.83713 1.90742 1.37658 1.21952 1.85881 1.43302 1.52323 1.32123 1.03955 1.17739 1.01463 0.92249 0.87064 1.21158 0.97147 0.92043 0.98265 1.21189 1.01185 1.01498 0.92162 1.17295 0.98714 0.90151 0.84490 1.91538 1.84120 1.83895 1.51425 1.20866 1.04835 0.94114 0.99455 1.17049 1.02317 0.77163 0.95247 1.91540 1.93768 1.28546 1.96689 0.90661 0.89801 0.90500 0.88657 0.88647 0.95557 0.95516 0.92884 0.74566 0.82040 0.83380 0.82926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 9.49 37.16 0.35 -1.19 16 2 C 0.07 0.85 2.97 -27.89 -0.08 0.77 16 3 H 0.11 1.40 7.16 -51.93 -0.37 1.02 16 4 O -0.34 -5.49 9.42 -45.89 -0.43 -5.92 16 5 C 0.46 8.69 7.93 36.00 0.29 8.98 16 6 O -0.50 -10.64 15.20 -18.75 -0.28 -10.93 16 7 C -0.10 -2.04 5.75 -27.89 -0.16 -2.21 16 8 C 0.03 0.85 4.26 -27.88 -0.12 0.74 16 9 C -0.53 -14.61 9.11 -34.44 -0.31 -14.92 16 10 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 11 C 0.06 1.65 5.46 -17.81 -0.10 1.56 16 12 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 13 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.52 6.15 7.03 -10.99 -0.08 6.08 16 18 O -0.49 -7.31 13.93 -14.06 -0.20 -7.50 16 19 N -0.67 -5.81 5.19 -9.79 -0.05 -5.86 16 20 C 0.11 1.00 6.31 -83.56 -0.53 0.47 16 21 C -0.07 -0.59 8.70 -39.41 -0.34 -0.93 16 22 C -0.14 -1.06 10.02 -39.53 -0.40 -1.46 16 23 C 0.11 0.89 7.30 -39.41 -0.29 0.60 16 24 F -0.13 -1.10 17.26 2.25 0.04 -1.06 16 25 C -0.17 -1.29 10.00 -39.48 -0.39 -1.68 16 26 C 0.10 0.88 7.31 -39.26 -0.29 0.59 16 27 F -0.13 -1.10 16.96 2.25 0.04 -1.06 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.46 7.79 -51.93 -0.40 0.05 16 31 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 32 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 33 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.42 2.47 8.31 -40.82 -0.34 2.13 16 37 H 0.16 1.56 6.20 -52.49 -0.33 1.24 16 38 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -33.54 354.14 -6.64 -40.18 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -4.36 Total: -0.90 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -2.45 Total: -2.60 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.69 Total: -31.84 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.91 Total: -24.35 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.08 Total: -2.12 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.54 -6.64 -40.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618323.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.874 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds