Wall clock time and date at job start Tue Mar 31 2020 15:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47114 * 2 1 4 4 O 1.45202 * 109.46873 * 119.99542 * 2 1 3 5 5 C 1.34230 * 117.00235 * 269.99978 * 4 2 1 6 6 O 1.20825 * 119.99942 * 0.02562 * 5 4 2 7 7 C 1.50695 * 120.00143 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.47004 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.46727 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00790 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99991 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99608 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00243 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46959 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47023 * 120.00071 * 13 11 9 16 16 H 1.48498 * 109.47277 * 239.99931 * 13 11 9 17 17 C 1.50699 * 109.47462 * 239.99860 * 2 1 3 18 18 O 1.21298 * 119.99904 * 245.00112 * 17 2 1 19 19 N 1.34778 * 119.99907 * 64.99891 * 17 2 1 20 20 C 1.40147 * 119.99571 * 175.84338 * 19 17 2 21 21 C 1.38786 * 120.05514 * 34.62164 * 20 19 17 22 22 C 1.38150 * 119.97871 * 179.72254 * 21 20 19 23 23 C 1.38475 * 120.08305 * 0.54422 * 22 21 20 24 24 F 1.35094 * 119.94591 * 179.74722 * 23 22 21 25 25 C 1.38455 * 120.10589 * 359.73071 * 23 22 21 26 26 C 1.38300 * 120.02288 * 359.97438 * 25 23 22 27 27 F 1.35108 * 120.04353 * 179.97438 * 26 25 23 28 28 H 1.08999 * 109.47114 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47455 * 300.00173 * 1 2 3 30 30 H 1.09003 * 109.47440 * 60.00330 * 1 2 3 31 31 H 1.08997 * 109.47044 * 300.00383 * 7 5 4 32 32 H 1.09009 * 109.46739 * 60.00315 * 7 5 4 33 33 H 1.08997 * 109.47472 * 300.00046 * 8 7 5 34 34 H 1.08996 * 109.47436 * 60.00470 * 8 7 5 35 35 H 0.96998 * 119.99642 * 179.97438 * 12 11 9 36 36 H 0.96995 * 120.00011 * 355.56357 * 19 17 2 37 37 H 1.08002 * 120.01303 * 359.97242 * 21 20 19 38 38 H 1.08002 * 119.95400 * 180.27441 * 22 21 20 39 39 H 1.08003 * 119.98837 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6844 1.1856 5 6 2.2170 0.0641 2.2812 6 8 1.9973 1.2518 2.2506 7 6 2.7180 -0.5770 3.5496 8 6 2.8621 0.4891 4.6375 9 6 3.3638 -0.1520 5.9057 10 1 3.5606 -1.2135 5.9330 11 6 3.5726 0.6169 7.0310 12 7 3.3334 1.9098 6.9977 13 14 4.1937 -0.1778 8.6033 14 1 4.3828 -1.6338 8.3806 15 1 5.4896 0.4359 8.9896 16 1 3.2030 0.0328 9.6892 17 6 2.0324 -0.7104 -1.2304 18 8 2.6531 -1.7468 -1.1213 19 7 1.7919 -0.1942 -2.4520 20 6 2.3328 -0.8070 -3.5904 21 6 2.4674 -2.1875 -3.6391 22 6 2.9955 -2.7903 -4.7644 23 6 3.4013 -2.0181 -5.8398 24 9 3.9220 -2.6102 -6.9368 25 6 3.2739 -0.6402 -5.7927 26 6 2.7402 -0.0326 -4.6709 27 9 2.6161 1.3120 -4.6243 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.0085 -1.3367 3.8775 32 1 3.6870 -1.0407 3.3641 33 1 3.5715 1.2491 4.3098 34 1 1.8931 0.9524 4.8228 35 1 3.4799 2.4506 7.7894 36 1 1.2413 0.5990 -2.5435 37 1 2.1557 -2.7906 -2.7991 38 1 3.0960 -3.8649 -4.8035 39 1 3.5906 -0.0398 -6.6328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618323.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:10 Heat of formation + Delta-G solvation = -209.308750 kcal Electronic energy + Delta-G solvation = -26468.326615 eV Core-core repulsion = 22011.353300 eV Total energy + Delta-G solvation = -4456.973315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.15245 -50.02507 -42.16440 -41.28661 -39.45051 -37.71425 -36.09270 -35.65840 -33.59257 -32.83343 -31.96552 -30.13594 -28.12367 -26.16400 -24.82927 -24.27576 -23.42934 -21.81224 -21.39623 -19.77704 -19.27953 -19.12558 -18.43755 -18.14567 -17.94564 -17.44045 -17.13287 -16.84550 -16.75787 -16.47552 -16.40924 -16.27121 -15.61983 -15.52051 -15.12420 -14.92305 -14.45543 -14.29389 -14.20176 -13.91330 -13.61311 -13.45286 -13.32003 -13.25592 -12.88652 -12.83478 -12.61306 -12.49252 -12.05954 -11.97787 -11.75929 -11.59237 -11.50350 -11.27672 -11.03116 -10.58473 -10.15841 -9.33530 -8.20513 -6.33585 -0.30567 -0.10956 0.98048 1.17993 1.18811 1.44003 1.44321 1.58049 1.99429 2.26397 2.43321 2.72680 3.13573 3.15407 3.21817 3.51464 3.65101 3.76789 3.79308 3.86275 4.01466 4.24088 4.38276 4.43245 4.57414 4.58240 4.60216 4.82242 4.86346 4.90130 4.98504 5.02940 5.08076 5.24269 5.47050 5.55222 5.65308 5.80467 5.97655 6.13212 6.67451 6.73892 6.84891 7.36463 8.92161 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.025379 B = 0.002034 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.020580 B =13764.133102 C =14163.379170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.060 3.940 3 H 0.115 0.885 4 O -0.338 6.338 5 C 0.470 3.530 6 O -0.532 6.532 7 C -0.095 4.095 8 C 0.040 3.960 9 C -0.544 4.544 10 H 0.076 0.924 11 C -0.003 4.003 12 N -0.934 5.934 13 Si 0.973 3.027 14 H -0.255 1.255 15 H -0.281 1.281 16 H -0.279 1.279 17 C 0.530 3.470 18 O -0.526 6.526 19 N -0.652 5.652 20 C 0.096 3.904 21 C -0.074 4.074 22 C -0.135 4.135 23 C 0.111 3.889 24 F -0.133 7.133 25 C -0.167 4.167 26 C 0.102 3.898 27 F -0.129 7.129 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.112 0.888 33 H -0.009 1.009 34 H -0.005 1.005 35 H 0.264 0.736 36 H 0.431 0.569 37 H 0.153 0.847 38 H 0.167 0.833 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.536 -7.534 -28.571 30.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.002 3.998 3 H 0.133 0.867 4 O -0.255 6.255 5 C 0.315 3.685 6 O -0.421 6.421 7 C -0.132 4.132 8 C 0.002 3.998 9 C -0.581 4.581 10 H 0.094 0.906 11 C -0.201 4.201 12 N -0.574 5.574 13 Si 0.797 3.203 14 H -0.179 1.179 15 H -0.207 1.207 16 H -0.205 1.205 17 C 0.317 3.683 18 O -0.400 6.400 19 N -0.301 5.301 20 C 0.001 3.999 21 C -0.095 4.095 22 C -0.154 4.154 23 C 0.091 3.909 24 F -0.112 7.112 25 C -0.186 4.186 26 C 0.080 3.920 27 F -0.107 7.107 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.009 0.991 34 H 0.014 0.986 35 H 0.073 0.927 36 H 0.271 0.729 37 H 0.171 0.829 38 H 0.184 0.816 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.163 -7.708 -28.396 29.873 hybrid contribution 0.153 0.929 0.671 1.156 sum -5.010 -6.779 -27.725 28.978 Atomic orbital electron populations 1.22211 0.89061 1.04929 1.05600 1.22601 0.98128 0.97471 0.81590 0.86719 1.86661 1.77329 1.41818 1.19667 1.24541 0.72937 0.85758 0.85313 1.90623 1.49120 1.18016 1.84307 1.21544 1.03762 1.00577 0.87353 1.18802 0.95746 0.93070 0.92146 1.21668 1.44489 0.95658 0.96317 0.90633 1.26071 0.95621 0.95311 1.03136 1.70153 1.49770 1.06840 1.30634 0.85283 0.77685 0.79191 0.78162 1.17874 1.20673 1.20508 1.20367 0.78743 0.84963 0.84213 1.90735 1.39444 1.23453 1.86401 1.43075 1.51836 1.32168 1.03022 1.17868 1.02258 0.92563 0.87178 1.21129 0.97788 0.92028 0.98509 1.21360 1.00065 1.02510 0.91466 1.17366 0.98728 0.90371 0.84465 1.91538 1.84164 1.83952 1.51516 1.21056 1.03788 0.94197 0.99598 1.17051 1.02607 0.77052 0.95316 1.91538 1.93830 1.28649 1.96712 0.90104 0.91203 0.86622 0.86427 0.87039 0.99050 0.98634 0.92732 0.72936 0.82927 0.81566 0.81051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.49 71.98 0.68 -2.07 16 2 C 0.06 1.45 2.97 29.85 0.09 1.54 16 3 H 0.12 2.76 7.16 -2.39 -0.02 2.75 16 4 O -0.34 -10.89 9.42 -45.08 -0.42 -11.31 16 5 C 0.47 17.92 7.93 71.23 0.56 18.48 16 6 O -0.53 -23.12 15.20 21.97 0.33 -22.79 16 7 C -0.10 -3.82 5.75 29.85 0.17 -3.65 16 8 C 0.04 2.11 4.26 29.85 0.13 2.24 16 9 C -0.54 -30.19 9.11 25.60 0.23 -29.96 16 10 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 11 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 12 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 13 Si 0.97 43.62 29.54 68.60 2.03 45.64 16 14 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 17 C 0.53 11.98 7.03 87.66 0.62 12.60 16 18 O -0.53 -15.42 13.93 15.66 0.22 -15.21 16 19 N -0.65 -10.42 5.19 -303.26 -1.57 -12.00 16 20 C 0.10 1.62 6.31 38.13 0.24 1.87 16 21 C -0.07 -1.25 8.70 22.38 0.19 -1.05 16 22 C -0.13 -1.82 10.02 22.31 0.22 -1.59 16 23 C 0.11 1.53 7.30 22.38 0.16 1.70 16 24 F -0.13 -1.98 17.26 44.97 0.78 -1.20 16 25 C -0.17 -2.15 10.00 22.34 0.22 -1.93 16 26 C 0.10 1.54 7.31 22.48 0.16 1.70 16 27 F -0.13 -2.02 16.96 44.97 0.76 -1.25 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.12 1.06 7.79 -2.39 -0.02 1.04 16 31 H 0.12 4.19 8.14 -2.39 -0.02 4.17 16 32 H 0.11 4.12 8.14 -2.38 -0.02 4.10 16 33 H -0.01 -0.53 8.10 -2.39 -0.02 -0.55 16 34 H 0.00 -0.28 8.10 -2.39 -0.02 -0.30 16 35 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 36 H 0.43 4.28 8.31 -92.71 -0.77 3.50 16 37 H 0.15 2.88 6.20 -2.91 -0.02 2.86 16 38 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -73.70 354.14 6.90 -66.80 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.34 Total: 8.35 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 4.16 Total: 0.13 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -1.29 Total: -69.16 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: 0.13 Total: -49.30 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 1.54 Total: -2.45 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -73.70 6.90 -66.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618323.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.512 kcal (2) G-P(sol) polarization free energy of solvation -73.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds