Wall clock time and date at job start Tue Mar 31 2020 15:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47061 * 2 1 4 4 O 1.45208 * 109.46833 * 239.99710 * 2 1 3 5 5 C 1.34225 * 116.99682 * 90.00543 * 4 2 1 6 6 O 1.20829 * 120.00156 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99823 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.46914 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.46914 * 180.02562 * 8 7 5 10 10 H 1.07998 * 119.99993 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99739 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00108 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99616 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47477 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46852 * 120.00577 * 13 11 9 16 16 H 1.48507 * 109.47287 * 240.00180 * 13 11 9 17 17 C 1.50697 * 109.47233 * 120.00243 * 2 1 3 18 18 O 1.21287 * 120.00585 * 114.99611 * 17 2 1 19 19 N 1.34783 * 119.99743 * 294.99819 * 17 2 1 20 20 C 1.40150 * 120.00044 * 185.52908 * 19 17 2 21 21 C 1.38787 * 120.05011 * 24.80979 * 20 19 17 22 22 C 1.38152 * 119.97600 * 180.25651 * 21 20 19 23 23 C 1.38474 * 120.08092 * 359.44216 * 22 21 20 24 24 F 1.35107 * 119.94284 * 180.30068 * 23 22 21 25 25 C 1.38454 * 120.11013 * 0.55954 * 23 22 21 26 26 C 1.38297 * 120.01934 * 359.71843 * 25 23 22 27 27 F 1.35103 * 120.04386 * 179.97438 * 26 25 23 28 28 H 1.09003 * 109.47141 * 60.00348 * 1 2 3 29 29 H 1.08997 * 109.47061 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47062 * 300.00172 * 1 2 3 31 31 H 1.08994 * 109.46853 * 299.99284 * 7 5 4 32 32 H 1.09000 * 109.47119 * 59.99999 * 7 5 4 33 33 H 1.09003 * 109.47160 * 299.99457 * 8 7 5 34 34 H 1.09000 * 109.47541 * 59.99803 * 8 7 5 35 35 H 0.97001 * 119.99812 * 179.97438 * 12 11 9 36 36 H 0.96997 * 119.99868 * 5.53489 * 19 17 2 37 37 H 1.07997 * 120.01611 * 359.97438 * 21 20 19 38 38 H 1.07993 * 119.95472 * 179.69988 * 22 21 20 39 39 H 1.08005 * 119.98744 * 179.74433 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1856 5 6 2.2172 0.0639 -2.2811 6 8 1.9975 1.2517 -2.2506 7 6 2.7193 -0.5772 -3.5492 8 6 2.8633 0.4889 -4.6372 9 6 3.3648 -0.1523 -5.9054 10 1 3.5616 -1.2139 -5.9326 11 6 3.5724 0.6163 -7.0311 12 7 3.3332 1.9091 -6.9979 13 14 4.1948 -0.1784 -8.6029 14 1 4.3850 -1.6341 -8.3799 15 1 3.2038 0.0303 -9.6890 16 1 5.4899 0.4370 -8.9896 17 6 2.0324 -0.7104 1.2304 18 8 2.6530 -1.7468 1.1215 19 7 1.7920 -0.1942 2.4520 20 6 2.3563 -0.7900 3.5881 21 6 3.5193 -1.5389 3.4749 22 6 4.0714 -2.1300 4.5949 23 6 3.4721 -1.9668 5.8326 24 9 4.0178 -2.5411 6.9270 25 6 2.3118 -1.2204 5.9495 26 6 1.7523 -0.6315 4.8302 27 9 0.6198 0.0964 4.9437 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.6884 -1.0401 -3.3631 32 1 2.0105 -1.3374 -3.8774 33 1 1.8940 0.9514 -4.8231 34 1 3.5719 1.2494 -4.3093 35 1 3.4797 2.4499 -7.7897 36 1 1.2283 0.5897 2.5448 37 1 3.9901 -1.6634 2.5110 38 1 4.9736 -2.7167 4.5057 39 1 1.8439 -1.0978 6.9151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618324.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:13 Heat of formation + Delta-G solvation = -188.710371 kcal Electronic energy + Delta-G solvation = -26464.638479 eV Core-core repulsion = 22008.558377 eV Total energy + Delta-G solvation = -4456.080102 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.51042 -49.36255 -41.19860 -40.08001 -38.62456 -36.35271 -35.29067 -33.65309 -32.45425 -31.33011 -31.06137 -29.41548 -26.28213 -25.18403 -24.02701 -23.16861 -22.15144 -20.79418 -19.94323 -19.06771 -18.41558 -17.90552 -17.36519 -17.05441 -16.50626 -16.36446 -16.16447 -16.00218 -15.76491 -15.58865 -15.31170 -14.95210 -14.54307 -14.46474 -14.23982 -13.71976 -13.51164 -13.14530 -12.95510 -12.73291 -12.66810 -12.39531 -12.25020 -12.06332 -11.77564 -11.27117 -11.00722 -10.96821 -10.78086 -10.64872 -10.12954 -10.10664 -10.03105 -9.63645 -9.51353 -9.20645 -8.56221 -8.41621 -6.05351 -4.10110 0.37891 0.52272 2.01091 2.01749 2.65692 2.94071 3.08692 3.28948 3.36580 3.37123 3.40546 3.82918 3.97978 4.16445 4.37854 4.41548 4.56367 4.63817 4.71028 4.89977 5.02116 5.22575 5.30501 5.38659 5.41865 5.47074 5.53992 5.67851 5.76934 5.80357 6.06353 6.13585 6.31516 6.46327 6.70185 6.79686 7.51740 7.61948 7.67341 7.93413 8.12164 8.31715 8.97009 9.54334 11.05665 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.026763 B = 0.002036 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.955520 B =13747.324858 C =14481.596147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.069 3.931 3 H 0.115 0.885 4 O -0.336 6.336 5 C 0.459 3.541 6 O -0.502 6.502 7 C -0.102 4.102 8 C 0.033 3.967 9 C -0.528 4.528 10 H 0.060 0.940 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.523 3.477 18 O -0.488 6.488 19 N -0.666 5.666 20 C 0.117 3.883 21 C -0.078 4.078 22 C -0.136 4.136 23 C 0.108 3.892 24 F -0.132 7.132 25 C -0.169 4.169 26 C 0.096 3.904 27 F -0.129 7.129 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.262 0.738 36 H 0.418 0.582 37 H 0.168 0.832 38 H 0.149 0.851 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.006 -5.237 27.091 27.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.010 3.990 3 H 0.133 0.867 4 O -0.254 6.254 5 C 0.303 3.697 6 O -0.388 6.388 7 C -0.139 4.139 8 C -0.004 4.004 9 C -0.566 4.566 10 H 0.078 0.922 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.724 3.276 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.209 1.209 17 C 0.310 3.690 18 O -0.360 6.360 19 N -0.313 5.313 20 C 0.021 3.979 21 C -0.098 4.098 22 C -0.155 4.155 23 C 0.088 3.912 24 F -0.110 7.110 25 C -0.189 4.189 26 C 0.074 3.926 27 F -0.107 7.107 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.255 0.745 37 H 0.185 0.815 38 H 0.166 0.834 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.661 -5.427 26.863 27.649 hybrid contribution -0.193 0.293 -0.439 0.562 sum -3.855 -5.134 26.424 27.193 Atomic orbital electron populations 1.22182 0.91627 1.04211 1.04381 1.22218 0.96164 0.97713 0.82925 0.86706 1.86750 1.77514 1.41949 1.19150 1.25018 0.73498 0.86408 0.84810 1.90634 1.47737 1.16841 1.83627 1.21818 1.01995 1.02099 0.88004 1.19042 0.98605 0.92414 0.90344 1.21187 1.45004 0.94826 0.95612 0.92175 1.25023 0.95457 0.94825 0.99052 1.69998 1.48371 1.05030 1.29401 0.86477 0.78492 0.79539 0.83136 1.19610 1.20964 1.20949 1.20565 0.79636 0.85083 0.83750 1.90712 1.37782 1.21666 1.85843 1.43346 1.51321 1.32344 1.04285 1.17786 0.94615 1.00294 0.85217 1.21295 0.92428 0.95352 1.00715 1.21202 1.01966 1.02034 0.90307 1.17293 0.93599 0.96880 0.83453 1.91538 1.84897 1.82455 1.52156 1.20839 0.97339 1.01260 0.99426 1.16920 0.85219 0.97793 0.92637 1.91523 1.47581 1.74964 1.96661 0.89765 0.90663 0.90489 0.88634 0.88655 0.95526 0.95551 0.92878 0.74508 0.81513 0.83362 0.82965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.49 37.16 0.35 -1.25 16 2 C 0.07 0.84 2.98 -27.88 -0.08 0.76 16 3 H 0.12 1.35 7.16 -51.93 -0.37 0.98 16 4 O -0.34 -5.41 9.42 -45.87 -0.43 -5.85 16 5 C 0.46 8.57 7.93 36.01 0.29 8.85 16 6 O -0.50 -10.49 15.20 -18.75 -0.29 -10.78 16 7 C -0.10 -2.02 5.75 -27.88 -0.16 -2.18 16 8 C 0.03 0.85 4.26 -27.88 -0.12 0.73 16 9 C -0.53 -14.53 9.11 -34.44 -0.31 -14.84 16 10 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 13 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 C 0.52 6.07 6.99 -10.98 -0.08 5.99 16 18 O -0.49 -7.15 13.68 -14.06 -0.19 -7.34 16 19 N -0.67 -5.79 5.28 -9.79 -0.05 -5.84 16 20 C 0.12 1.07 6.44 -83.56 -0.54 0.53 16 21 C -0.08 -0.73 8.72 -39.41 -0.34 -1.07 16 22 C -0.14 -1.07 10.02 -39.53 -0.40 -1.46 16 23 C 0.11 0.86 7.30 -39.41 -0.29 0.57 16 24 F -0.13 -1.12 17.27 2.25 0.04 -1.08 16 25 C -0.17 -1.24 10.00 -39.48 -0.39 -1.63 16 26 C 0.10 0.79 7.31 -39.27 -0.29 0.50 16 27 F -0.13 -1.03 16.81 2.25 0.04 -1.00 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.49 7.76 -51.93 -0.40 0.08 16 31 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 32 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 33 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.42 2.51 8.05 -40.82 -0.33 2.18 16 37 H 0.17 1.78 5.79 -52.49 -0.30 1.47 16 38 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 39 H 0.15 0.83 8.06 -52.48 -0.42 0.40 16 LS Contribution 353.23 15.07 5.32 5.32 Total: -1.00 -33.06 353.23 -6.63 -39.69 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.33 Total: -0.53 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.46 Total: -2.95 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.68 Total: -31.70 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.91 Total: -23.97 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.08 Total: -2.07 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.06 -6.63 -39.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618324.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.022 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds