Wall clock time and date at job start Tue Mar 31 2020 15:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47061 * 2 1 4 4 O 1.45208 * 109.46833 * 239.99710 * 2 1 3 5 5 C 1.34225 * 116.99682 * 90.00543 * 4 2 1 6 6 O 1.20829 * 120.00156 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99823 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.46914 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.46914 * 180.02562 * 8 7 5 10 10 H 1.07998 * 119.99993 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99739 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00108 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99616 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47477 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46852 * 120.00577 * 13 11 9 16 16 H 1.48507 * 109.47287 * 240.00180 * 13 11 9 17 17 C 1.50697 * 109.47233 * 120.00243 * 2 1 3 18 18 O 1.21287 * 120.00585 * 114.99611 * 17 2 1 19 19 N 1.34783 * 119.99743 * 294.99819 * 17 2 1 20 20 C 1.40150 * 120.00044 * 185.52908 * 19 17 2 21 21 C 1.38787 * 120.05011 * 24.80979 * 20 19 17 22 22 C 1.38152 * 119.97600 * 180.25651 * 21 20 19 23 23 C 1.38474 * 120.08092 * 359.44216 * 22 21 20 24 24 F 1.35107 * 119.94284 * 180.30068 * 23 22 21 25 25 C 1.38454 * 120.11013 * 0.55954 * 23 22 21 26 26 C 1.38297 * 120.01934 * 359.71843 * 25 23 22 27 27 F 1.35103 * 120.04386 * 179.97438 * 26 25 23 28 28 H 1.09003 * 109.47141 * 60.00348 * 1 2 3 29 29 H 1.08997 * 109.47061 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47062 * 300.00172 * 1 2 3 31 31 H 1.08994 * 109.46853 * 299.99284 * 7 5 4 32 32 H 1.09000 * 109.47119 * 59.99999 * 7 5 4 33 33 H 1.09003 * 109.47160 * 299.99457 * 8 7 5 34 34 H 1.09000 * 109.47541 * 59.99803 * 8 7 5 35 35 H 0.97001 * 119.99812 * 179.97438 * 12 11 9 36 36 H 0.96997 * 119.99868 * 5.53489 * 19 17 2 37 37 H 1.07997 * 120.01611 * 359.97438 * 21 20 19 38 38 H 1.07993 * 119.95472 * 179.69988 * 22 21 20 39 39 H 1.08005 * 119.98744 * 179.74433 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1856 5 6 2.2172 0.0639 -2.2811 6 8 1.9975 1.2517 -2.2506 7 6 2.7193 -0.5772 -3.5492 8 6 2.8633 0.4889 -4.6372 9 6 3.3648 -0.1523 -5.9054 10 1 3.5616 -1.2139 -5.9326 11 6 3.5724 0.6163 -7.0311 12 7 3.3332 1.9091 -6.9979 13 14 4.1948 -0.1784 -8.6029 14 1 4.3850 -1.6341 -8.3799 15 1 3.2038 0.0303 -9.6890 16 1 5.4899 0.4370 -8.9896 17 6 2.0324 -0.7104 1.2304 18 8 2.6530 -1.7468 1.1215 19 7 1.7920 -0.1942 2.4520 20 6 2.3563 -0.7900 3.5881 21 6 3.5193 -1.5389 3.4749 22 6 4.0714 -2.1300 4.5949 23 6 3.4721 -1.9668 5.8326 24 9 4.0178 -2.5411 6.9270 25 6 2.3118 -1.2204 5.9495 26 6 1.7523 -0.6315 4.8302 27 9 0.6198 0.0964 4.9437 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.6884 -1.0401 -3.3631 32 1 2.0105 -1.3374 -3.8774 33 1 1.8940 0.9514 -4.8231 34 1 3.5719 1.2494 -4.3093 35 1 3.4797 2.4499 -7.7897 36 1 1.2283 0.5897 2.5448 37 1 3.9901 -1.6634 2.5110 38 1 4.9736 -2.7167 4.5057 39 1 1.8439 -1.0978 6.9151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618324.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:13 Heat of formation + Delta-G solvation = -207.508747 kcal Electronic energy + Delta-G solvation = -26465.453638 eV Core-core repulsion = 22008.558377 eV Total energy + Delta-G solvation = -4456.895261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.14352 -50.00781 -42.20007 -41.31261 -39.44234 -37.71697 -36.12828 -35.65526 -33.60384 -32.84141 -31.95437 -30.14324 -28.12111 -26.19106 -24.86044 -24.26578 -23.43831 -21.80968 -21.40984 -19.83340 -19.29880 -19.09386 -18.46209 -18.14327 -17.83007 -17.39649 -17.17883 -16.85092 -16.71442 -16.48254 -16.44942 -16.28881 -15.64421 -15.49190 -15.13282 -14.98264 -14.45107 -14.28493 -14.19906 -13.93145 -13.62303 -13.44211 -13.38423 -13.25233 -12.88658 -12.82633 -12.62565 -12.49062 -12.05131 -11.97214 -11.75556 -11.70872 -11.50387 -11.27331 -11.00146 -10.58203 -10.15552 -9.26442 -8.20257 -6.33254 -0.30333 -0.11241 1.00614 1.12707 1.19403 1.44298 1.44409 1.58175 1.98267 2.28152 2.43475 2.72503 3.13553 3.13893 3.19458 3.51533 3.64327 3.73465 3.79327 3.86040 4.01201 4.23154 4.38138 4.43787 4.55927 4.56974 4.59189 4.82737 4.84964 4.89549 5.00094 5.01419 5.06699 5.24202 5.47483 5.55778 5.65542 5.80831 5.96574 6.13591 6.65628 6.72813 6.85227 7.36827 8.92367 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.026763 B = 0.002036 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.955520 B =13747.324858 C =14481.596147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.061 3.939 3 H 0.120 0.880 4 O -0.338 6.338 5 C 0.470 3.530 6 O -0.531 6.531 7 C -0.095 4.095 8 C 0.040 3.960 9 C -0.543 4.543 10 H 0.075 0.925 11 C -0.003 4.003 12 N -0.934 5.934 13 Si 0.972 3.028 14 H -0.255 1.255 15 H -0.280 1.280 16 H -0.281 1.281 17 C 0.529 3.471 18 O -0.522 6.522 19 N -0.650 5.650 20 C 0.104 3.896 21 C -0.090 4.090 22 C -0.132 4.132 23 C 0.106 3.894 24 F -0.134 7.134 25 C -0.161 4.161 26 C 0.099 3.901 27 F -0.126 7.126 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.116 0.884 33 H -0.005 1.005 34 H -0.008 1.008 35 H 0.264 0.736 36 H 0.431 0.569 37 H 0.152 0.848 38 H 0.164 0.836 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.274 -6.533 28.347 29.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.003 3.997 3 H 0.137 0.863 4 O -0.255 6.255 5 C 0.315 3.685 6 O -0.420 6.420 7 C -0.133 4.133 8 C 0.002 3.998 9 C -0.581 4.581 10 H 0.093 0.907 11 C -0.201 4.201 12 N -0.574 5.574 13 Si 0.796 3.204 14 H -0.179 1.179 15 H -0.206 1.206 16 H -0.206 1.206 17 C 0.317 3.683 18 O -0.397 6.397 19 N -0.298 5.298 20 C 0.008 3.992 21 C -0.110 4.110 22 C -0.151 4.151 23 C 0.085 3.915 24 F -0.112 7.112 25 C -0.180 4.180 26 C 0.077 3.923 27 F -0.105 7.105 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.013 0.987 34 H 0.011 0.989 35 H 0.073 0.927 36 H 0.271 0.729 37 H 0.170 0.830 38 H 0.181 0.819 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -3.949 -6.729 28.170 29.231 hybrid contribution -0.129 0.709 -0.660 0.977 sum -4.078 -6.021 27.511 28.455 Atomic orbital electron populations 1.22216 0.89371 1.04751 1.05621 1.22600 0.97971 0.97588 0.81574 0.86272 1.86669 1.77307 1.41832 1.19669 1.24533 0.72940 0.85751 0.85275 1.90625 1.49107 1.17985 1.84279 1.21545 1.03774 1.00562 0.87370 1.18804 0.95749 0.93081 0.92124 1.21667 1.44491 0.95658 0.96307 0.90653 1.26058 0.95628 0.95311 1.03105 1.70149 1.49780 1.06829 1.30620 0.85291 0.77696 0.79190 0.78195 1.17899 1.20571 1.20634 1.20370 0.79164 0.84555 0.84241 1.90710 1.39464 1.23183 1.86350 1.43120 1.50875 1.32409 1.03366 1.17894 0.94943 1.00874 0.85507 1.21204 0.92973 0.96284 1.00567 1.21335 1.02310 1.01552 0.89912 1.17350 0.93825 0.96972 0.83313 1.91539 1.84973 1.82521 1.52199 1.21051 0.96813 1.00086 1.00091 1.16869 0.85242 0.97812 0.92343 1.91533 1.47422 1.74900 1.96625 0.91046 0.90446 0.86728 0.86929 0.86555 0.98689 0.98938 0.92734 0.72900 0.83031 0.81868 0.80818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.49 71.98 0.68 -2.20 16 2 C 0.06 1.44 2.98 29.85 0.09 1.53 16 3 H 0.12 2.75 7.16 -2.39 -0.02 2.73 16 4 O -0.34 -10.76 9.42 -45.03 -0.42 -11.18 16 5 C 0.47 17.69 7.93 71.24 0.56 18.25 16 6 O -0.53 -22.75 15.20 21.96 0.33 -22.42 16 7 C -0.10 -3.78 5.75 29.85 0.17 -3.61 16 8 C 0.04 2.10 4.26 29.85 0.13 2.23 16 9 C -0.54 -30.03 9.11 25.60 0.23 -29.80 16 10 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 11 C 0.00 -0.18 5.46 84.66 0.46 0.29 16 12 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 13 Si 0.97 43.45 29.54 68.60 2.03 45.47 16 14 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 15 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 17 C 0.53 11.88 6.99 87.66 0.61 12.49 16 18 O -0.52 -15.22 13.68 15.69 0.21 -15.00 16 19 N -0.65 -10.40 5.28 -303.27 -1.60 -12.00 16 20 C 0.10 1.76 6.44 38.13 0.25 2.00 16 21 C -0.09 -1.63 8.72 22.38 0.20 -1.44 16 22 C -0.13 -1.92 10.02 22.31 0.22 -1.70 16 23 C 0.11 1.49 7.30 22.38 0.16 1.65 16 24 F -0.13 -2.02 17.27 44.97 0.78 -1.24 16 25 C -0.16 -1.99 10.00 22.34 0.22 -1.76 16 26 C 0.10 1.42 7.31 22.47 0.16 1.58 16 27 F -0.13 -1.73 16.81 44.97 0.76 -0.97 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.11 1.14 7.76 -2.39 -0.02 1.12 16 31 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 32 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 33 H -0.01 -0.31 8.10 -2.39 -0.02 -0.33 16 34 H -0.01 -0.46 8.10 -2.39 -0.02 -0.48 16 35 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.43 4.31 8.05 -92.71 -0.75 3.56 16 37 H 0.15 3.28 5.79 -2.91 -0.02 3.26 16 38 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -72.62 353.23 6.89 -65.73 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.37 Total: 8.99 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 4.16 Total: -0.48 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -1.32 Total: -68.90 kcal Atomic # 8 Polarization: -48.73 SS G_CDS: 0.12 Total: -48.60 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 1.53 Total: -2.21 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -72.62 6.89 -65.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618324.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.776 kcal (2) G-P(sol) polarization free energy of solvation -72.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds