Wall clock time and date at job start Tue Mar 31 2020 15:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08996 * 109.46876 * 2 1 4 4 O 1.45195 * 109.47185 * 120.00272 * 2 1 3 5 5 C 1.34232 * 117.00141 * 270.00107 * 4 2 1 6 6 O 1.20824 * 119.99696 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00193 * 180.02562 * 5 4 2 8 8 C 1.52996 * 109.47151 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47151 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00321 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00229 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99885 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00392 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47088 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47129 * 119.99971 * 13 11 9 16 16 H 1.48495 * 109.46978 * 239.99758 * 13 11 9 17 17 C 1.50701 * 109.46859 * 240.00156 * 2 1 3 18 18 O 1.21294 * 120.00043 * 245.00108 * 17 2 1 19 19 N 1.34772 * 120.00158 * 64.99705 * 17 2 1 20 20 C 1.40173 * 120.00362 * 174.93510 * 19 17 2 21 21 C 1.38984 * 120.08696 * 270.73155 * 20 19 17 22 22 F 1.35099 * 120.04444 * 359.97247 * 21 20 19 23 23 C 1.38348 * 119.90892 * 179.72129 * 21 20 19 24 24 C 1.38258 * 120.08774 * 0.56816 * 23 21 20 25 25 C 1.38272 * 120.17239 * 359.68035 * 24 23 21 26 26 C 1.38343 * 120.08230 * 0.04570 * 25 24 23 27 27 F 1.35099 * 120.03877 * 179.97438 * 26 25 24 28 28 H 1.08998 * 109.46670 * 59.99838 * 1 2 3 29 29 H 1.08996 * 109.46876 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46583 * 299.99960 * 1 2 3 31 31 H 1.09004 * 109.46954 * 299.99711 * 7 5 4 32 32 H 1.09000 * 109.47327 * 59.99127 * 7 5 4 33 33 H 1.09004 * 109.47067 * 299.99779 * 8 7 5 34 34 H 1.09000 * 109.47606 * 59.99435 * 8 7 5 35 35 H 0.97003 * 120.00215 * 180.02562 * 12 11 9 36 36 H 0.97002 * 120.00120 * 354.94773 * 19 17 2 37 37 H 1.08003 * 119.95089 * 180.27039 * 23 21 20 38 38 H 1.08000 * 119.91650 * 179.70316 * 24 23 21 39 39 H 1.08001 * 119.95685 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2172 0.0639 2.2811 6 8 1.9983 1.2518 2.2504 7 6 2.7194 -0.5772 3.5491 8 6 2.8645 0.4890 4.6368 9 6 3.3661 -0.1522 5.9050 10 1 3.5615 -1.2140 5.9326 11 6 3.5746 0.6166 7.0304 12 7 3.3363 1.9095 6.9970 13 14 4.1957 -0.1783 8.6026 14 1 4.3840 -1.6345 8.3802 15 1 5.4915 0.4355 8.9892 16 1 3.2049 0.0321 9.6884 17 6 2.0324 -0.7104 -1.2305 18 8 2.6530 -1.7468 -1.1216 19 7 1.7919 -0.1942 -2.4520 20 6 2.3483 -0.7959 -3.5892 21 6 3.6032 -0.4050 -4.0408 22 9 4.2890 0.5564 -3.3846 23 6 4.1514 -1.0053 -5.1602 24 6 3.4475 -1.9847 -5.8363 25 6 2.1966 -2.3726 -5.3931 26 6 1.6441 -1.7810 -4.2712 27 9 0.4215 -2.1604 -3.8392 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 2.0106 -1.3374 3.8773 32 1 3.6885 -1.0402 3.3630 33 1 3.5736 1.2490 4.3084 34 1 1.8956 0.9524 4.8230 35 1 3.4833 2.4505 7.7886 36 1 1.2338 0.5939 -2.5443 37 1 5.1284 -0.7051 -5.5092 38 1 3.8761 -2.4481 -6.7126 39 1 1.6500 -3.1383 -5.9236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618822.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:16 Heat of formation + Delta-G solvation = -188.856574 kcal Electronic energy + Delta-G solvation = -26946.235666 eV Core-core repulsion = 22490.149224 eV Total energy + Delta-G solvation = -4456.086442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.43335 -49.40195 -40.80831 -39.88035 -38.76368 -36.26251 -35.24207 -33.60094 -32.36834 -31.03102 -30.86453 -29.75922 -26.21707 -25.14832 -23.44092 -23.40203 -22.13881 -20.82519 -19.85255 -18.88955 -18.27988 -17.82222 -17.67693 -17.12863 -16.37728 -16.18646 -16.09934 -15.97199 -15.70490 -15.60146 -15.21146 -14.90891 -14.81017 -14.46086 -14.08192 -13.56225 -13.25767 -13.06698 -12.67887 -12.54265 -12.49541 -12.35369 -12.31852 -12.19219 -11.69819 -11.21640 -10.97257 -10.71518 -10.60880 -10.12683 -10.05434 -9.99561 -9.94021 -9.60705 -9.45484 -9.28299 -9.16201 -8.37686 -6.01444 -4.05984 0.32589 0.43954 2.15647 2.21742 2.74536 2.79878 3.17712 3.31738 3.32306 3.39248 3.43569 3.88262 4.16259 4.24741 4.30259 4.45035 4.56572 4.68700 4.82752 4.92652 5.11627 5.25658 5.33419 5.34246 5.43807 5.49418 5.58081 5.60141 5.81568 5.89028 6.12743 6.20156 6.30294 6.55281 6.82255 6.88087 7.66588 7.72632 7.76095 7.97860 8.20002 8.37304 9.01154 9.58146 11.09632 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.024834 B = 0.002248 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.206529 B =12454.199227 C =12768.633802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.071 3.929 3 H 0.114 0.886 4 O -0.337 6.337 5 C 0.459 3.541 6 O -0.503 6.503 7 C -0.102 4.102 8 C 0.033 3.967 9 C -0.527 4.527 10 H 0.060 0.940 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.526 3.474 18 O -0.495 6.495 19 N -0.682 5.682 20 C 0.066 3.934 21 C 0.139 3.861 22 F -0.121 7.121 23 C -0.160 4.160 24 C -0.054 4.054 25 C -0.161 4.161 26 C 0.141 3.859 27 F -0.122 7.122 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.261 0.739 36 H 0.415 0.585 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 -5.793 -30.448 31.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.012 3.988 3 H 0.131 0.869 4 O -0.254 6.254 5 C 0.302 3.698 6 O -0.390 6.390 7 C -0.139 4.139 8 C -0.004 4.004 9 C -0.565 4.565 10 H 0.078 0.922 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.724 3.276 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.312 3.688 18 O -0.366 6.366 19 N -0.337 5.337 20 C -0.028 4.028 21 C 0.118 3.882 22 F -0.099 7.099 23 C -0.179 4.179 24 C -0.072 4.072 25 C -0.180 4.180 26 C 0.120 3.880 27 F -0.100 7.100 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.253 0.747 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.807 -5.995 -30.166 30.991 hybrid contribution -0.071 0.341 0.965 1.026 sum -3.878 -5.654 -29.201 29.995 Atomic orbital electron populations 1.22160 0.91715 1.04115 1.04192 1.22199 0.96041 0.97683 0.82913 0.86880 1.86742 1.77478 1.41978 1.19195 1.24990 0.73502 0.86403 0.84860 1.90624 1.47811 1.16826 1.83692 1.21807 1.01980 1.02070 0.88078 1.19037 0.98593 0.92426 0.90337 1.21193 1.44901 0.94798 0.95632 0.92192 1.25024 0.95491 0.94826 0.99034 1.70004 1.48449 1.05015 1.29379 0.86477 0.78472 0.79542 0.83157 1.19617 1.20961 1.20972 1.20582 0.79304 0.85197 0.83687 1.90771 1.37989 1.21907 1.85905 1.43070 1.54079 1.33172 1.03399 1.17363 0.93877 0.99723 0.91847 1.17725 0.89314 0.88848 0.92286 1.91570 1.78300 1.60107 1.79933 1.21216 1.02276 0.98963 0.95478 1.20955 0.92777 0.94557 0.98923 1.21206 0.97505 1.02631 0.96694 1.17683 0.81609 0.94525 0.94209 1.91550 1.39659 1.89651 1.89155 0.90524 0.90740 0.89925 0.88693 0.88686 0.95544 0.95521 0.92909 0.74706 0.83342 0.83372 0.83398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.49 37.16 0.35 -1.46 16 2 C 0.07 1.00 2.98 -27.88 -0.08 0.92 16 3 H 0.11 1.56 7.16 -51.93 -0.37 1.19 16 4 O -0.34 -6.08 9.42 -45.89 -0.43 -6.51 16 5 C 0.46 9.25 7.93 36.00 0.29 9.53 16 6 O -0.50 -11.17 15.20 -18.75 -0.28 -11.46 16 7 C -0.10 -2.15 5.75 -27.89 -0.16 -2.31 16 8 C 0.03 0.88 4.26 -27.89 -0.12 0.76 16 9 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 10 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 13 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C 0.53 7.49 7.14 -10.99 -0.08 7.41 16 18 O -0.49 -9.06 16.49 -14.06 -0.23 -9.29 16 19 N -0.68 -7.20 4.89 -9.75 -0.05 -7.25 16 20 C 0.07 0.68 5.30 -83.49 -0.44 0.24 16 21 C 0.14 1.35 7.31 -39.26 -0.29 1.07 16 22 F -0.12 -1.38 17.08 2.25 0.04 -1.34 16 23 C -0.16 -1.04 10.02 -39.53 -0.40 -1.44 16 24 C -0.05 -0.26 10.04 -39.56 -0.40 -0.66 16 25 C -0.16 -1.00 10.02 -39.53 -0.40 -1.40 16 26 C 0.14 1.30 7.31 -39.27 -0.29 1.01 16 27 F -0.12 -1.26 17.08 2.25 0.04 -1.23 16 28 H 0.08 0.58 7.77 -51.93 -0.40 0.17 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 32 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 33 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.41 2.97 8.44 -40.82 -0.34 2.62 16 37 H 0.15 0.64 8.06 -52.48 -0.42 0.22 16 38 H 0.15 0.23 8.06 -52.49 -0.42 -0.19 16 39 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 358.77 15.07 5.41 5.41 Total: -1.00 -36.42 358.77 -6.68 -43.09 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -4.46 Total: -1.74 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.42 Total: 0.06 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.69 Total: -33.63 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.95 Total: -27.26 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.08 Total: -2.57 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.42 -6.68 -43.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618822.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.763 kcal (2) G-P(sol) polarization free energy of solvation -36.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds