Wall clock time and date at job start Tue Mar 31 2020 15:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46947 * 2 1 4 4 O 1.45204 * 109.47034 * 119.99116 * 2 1 3 5 5 C 1.34227 * 117.00012 * 270.00636 * 4 2 1 6 6 O 1.20823 * 120.00372 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99425 * 179.97438 * 5 4 2 8 8 C 1.53007 * 109.46706 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.46985 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00151 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00154 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99842 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00255 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47242 * 60.00285 * 13 11 9 15 15 H 1.48507 * 109.47127 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47065 * 300.00164 * 13 11 9 17 17 C 1.50693 * 109.47389 * 239.99424 * 2 1 3 18 18 O 1.21288 * 120.00020 * 244.99797 * 17 2 1 19 19 N 1.34780 * 120.00262 * 65.00407 * 17 2 1 20 20 C 1.40020 * 120.00154 * 185.27834 * 19 17 2 21 21 C 1.38861 * 120.03709 * 33.29667 * 20 19 17 22 22 C 1.38123 * 120.00392 * 179.74501 * 21 20 19 23 23 C 1.38438 * 120.06551 * 0.27594 * 22 21 20 24 24 F 1.35096 * 119.96199 * 179.97438 * 23 22 21 25 25 C 1.38670 * 120.06890 * 0.02562 * 23 22 21 26 26 F 1.35102 * 119.99784 * 179.97438 * 25 23 22 27 27 C 1.38321 * 120.00014 * 359.95336 * 25 23 22 28 28 H 1.09003 * 109.47319 * 300.00862 * 1 2 3 29 29 H 1.09000 * 109.46970 * 60.00589 * 1 2 3 30 30 H 1.09004 * 109.46947 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47343 * 299.99061 * 7 5 4 32 32 H 1.08998 * 109.47474 * 59.99971 * 7 5 4 33 33 H 1.08996 * 109.46972 * 300.00267 * 8 7 5 34 34 H 1.08998 * 109.46882 * 59.99971 * 8 7 5 35 35 H 0.97006 * 120.00217 * 179.97438 * 12 11 9 36 36 H 0.97004 * 119.99323 * 5.27091 * 19 17 2 37 37 H 1.08008 * 119.99962 * 0.02562 * 21 20 19 38 38 H 1.07997 * 119.97227 * 180.24881 * 22 21 20 39 39 H 1.08000 * 120.03348 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6843 1.1857 5 6 2.2170 0.0643 2.2812 6 8 1.9980 1.2521 2.2503 7 6 2.7181 -0.5769 3.5496 8 6 2.8632 0.4896 4.6372 9 6 3.3637 -0.1516 5.9058 10 1 3.5591 -1.2135 5.9335 11 6 3.5732 0.6174 7.0308 12 7 3.3357 1.9105 6.9969 13 14 4.1942 -0.1773 8.6031 14 1 5.5137 -0.8098 8.3503 15 1 4.3350 0.8578 9.6587 16 1 3.2270 -1.2115 9.0505 17 6 2.0324 -0.7105 -1.2303 18 8 2.6531 -1.7468 -1.1212 19 7 1.7921 -0.1944 -2.4520 20 6 2.1610 -0.9083 -3.5986 21 6 2.1128 -2.2961 -3.5988 22 6 2.4719 -2.9995 -4.7320 23 6 2.8856 -2.3225 -5.8665 24 9 3.2368 -3.0126 -6.9735 25 6 2.9408 -0.9369 -5.8674 26 9 3.3452 -0.2777 -6.9752 27 6 2.5814 -0.2297 -4.7343 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.0085 -1.3364 3.8776 32 1 3.6869 -1.0405 3.3642 33 1 3.5729 1.2489 4.3089 34 1 1.8945 0.9535 4.8226 35 1 3.4827 2.4515 7.7885 36 1 1.3634 0.6717 -2.5368 37 1 1.7902 -2.8254 -2.7144 38 1 2.4304 -4.0786 -4.7330 39 1 2.6238 0.8495 -4.7345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618827.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:21 Heat of formation + Delta-G solvation = -189.889458 kcal Electronic energy + Delta-G solvation = -26263.049055 eV Core-core repulsion = 21806.917824 eV Total energy + Delta-G solvation = -4456.131231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.84702 -48.91621 -41.24646 -40.12798 -38.65839 -36.34905 -35.22661 -33.65617 -32.41939 -31.37388 -31.06049 -29.45393 -26.28741 -25.20029 -23.94089 -23.34495 -22.12320 -20.81372 -19.95478 -18.96951 -18.10042 -17.99660 -17.53751 -17.20754 -16.70143 -16.41200 -16.14758 -16.10466 -15.64291 -15.33017 -15.15956 -14.85556 -14.50926 -14.48448 -14.18574 -13.83867 -13.42165 -13.35342 -13.14286 -12.83162 -12.67825 -12.40271 -12.25638 -11.90153 -11.75979 -11.28146 -10.97294 -10.83683 -10.78470 -10.69150 -10.17994 -10.10212 -10.05302 -9.63581 -9.53191 -9.23901 -8.65150 -8.41079 -6.05244 -4.10237 0.36824 0.48944 1.99366 2.01937 2.64878 2.92634 3.06371 3.31154 3.35791 3.37884 3.39629 3.88572 3.98333 4.14062 4.41360 4.44440 4.52151 4.54871 4.69374 4.82688 5.00610 5.20829 5.30346 5.32226 5.36827 5.45589 5.55949 5.61200 5.77405 5.79280 6.05796 6.13038 6.29593 6.45746 6.71170 6.78966 7.53170 7.61057 7.66975 7.93105 8.11447 8.31336 8.96356 9.54076 11.05651 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.029403 B = 0.001895 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.040948 B =14771.298248 C =15051.978898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.068 3.932 3 H 0.113 0.887 4 O -0.337 6.337 5 C 0.459 3.541 6 O -0.503 6.503 7 C -0.102 4.102 8 C 0.034 3.966 9 C -0.530 4.530 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.890 5.890 13 Si 0.897 3.103 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.521 3.479 18 O -0.487 6.487 19 N -0.671 5.671 20 C 0.175 3.825 21 C -0.103 4.103 22 C -0.102 4.102 23 C 0.050 3.950 24 F -0.129 7.129 25 C 0.090 3.910 26 F -0.126 7.126 27 C -0.156 4.156 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.417 0.583 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.463 -5.570 -26.215 27.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.009 3.991 3 H 0.131 0.869 4 O -0.254 6.254 5 C 0.303 3.697 6 O -0.389 6.389 7 C -0.140 4.140 8 C -0.003 4.003 9 C -0.568 4.568 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.724 3.276 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.201 1.201 17 C 0.308 3.692 18 O -0.358 6.358 19 N -0.319 5.319 20 C 0.080 3.920 21 C -0.123 4.123 22 C -0.121 4.121 23 C 0.029 3.971 24 F -0.108 7.108 25 C 0.069 3.931 26 F -0.104 7.104 27 C -0.177 4.177 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.254 0.746 37 H 0.172 0.828 38 H 0.170 0.830 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.073 -5.777 -26.027 27.343 hybrid contribution 0.283 0.332 0.314 0.537 sum -5.790 -5.445 -25.713 26.913 Atomic orbital electron populations 1.22164 0.91538 1.04158 1.04365 1.22212 0.96063 0.97816 0.82993 0.86893 1.86750 1.77528 1.41956 1.19161 1.25011 0.73456 0.86406 0.84817 1.90630 1.47761 1.16835 1.83645 1.21822 1.02008 1.02108 0.88014 1.19028 0.98582 0.92395 0.90315 1.21110 1.45274 0.94731 0.95677 0.92285 1.25017 0.95431 0.94827 0.99032 1.69978 1.48228 1.04993 1.29608 0.86587 0.79435 0.78921 0.82630 1.20130 1.21259 1.20134 1.20583 0.79052 0.85789 0.83807 1.90777 1.36517 1.22640 1.85908 1.43447 1.61377 1.23413 1.03650 1.17383 0.97259 0.91265 0.86128 1.21163 0.99931 0.92314 0.98934 1.21002 0.98962 1.01563 0.90569 1.17672 1.05939 0.88117 0.85399 1.91533 1.89821 1.78946 1.50472 1.17266 1.02864 0.88396 0.84592 1.91551 1.88054 1.80636 1.50163 1.20715 1.03816 1.01434 0.91751 0.89844 0.90428 0.90716 0.88652 0.88641 0.95569 0.95535 0.92765 0.74570 0.82845 0.83035 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.50 37.16 0.35 -1.08 16 2 C 0.07 0.79 2.98 -27.89 -0.08 0.70 16 3 H 0.11 1.26 7.16 -51.93 -0.37 0.89 16 4 O -0.34 -5.31 9.42 -45.88 -0.43 -5.75 16 5 C 0.46 8.49 7.93 36.01 0.29 8.77 16 6 O -0.50 -10.38 15.20 -18.75 -0.28 -10.66 16 7 C -0.10 -2.02 5.75 -27.88 -0.16 -2.18 16 8 C 0.03 0.87 4.26 -27.88 -0.12 0.75 16 9 C -0.53 -14.54 9.11 -34.44 -0.31 -14.86 16 10 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 13 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 C 0.52 5.65 6.92 -10.99 -0.08 5.57 16 18 O -0.49 -7.04 14.20 -14.06 -0.20 -7.24 16 19 N -0.67 -4.79 5.31 -9.86 -0.05 -4.85 16 20 C 0.17 1.39 6.28 -83.67 -0.53 0.86 16 21 C -0.10 -0.87 8.65 -39.39 -0.34 -1.22 16 22 C -0.10 -0.78 10.02 -39.55 -0.40 -1.17 16 23 C 0.05 0.44 7.30 -39.35 -0.29 0.15 16 24 F -0.13 -1.28 17.18 2.25 0.04 -1.24 16 25 C 0.09 0.78 7.30 -39.39 -0.29 0.49 16 26 F -0.13 -1.21 17.18 2.25 0.04 -1.17 16 27 C -0.16 -1.10 9.94 -39.34 -0.39 -1.49 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 32 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 33 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.42 1.54 8.79 -40.82 -0.36 1.18 16 37 H 0.15 1.41 6.41 -52.48 -0.34 1.08 16 38 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 LS Contribution 355.43 15.07 5.36 5.36 Total: -1.00 -34.02 355.43 -6.67 -40.69 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -4.41 Total: -2.38 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -2.44 Total: -3.13 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.68 Total: -30.64 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.92 Total: -23.65 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.08 Total: -2.41 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.02 -6.67 -40.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618827.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.204 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds