Wall clock time and date at job start Tue Mar 31 2020 15:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46947 * 2 1 4 4 O 1.45204 * 109.47034 * 119.99116 * 2 1 3 5 5 C 1.34227 * 117.00012 * 270.00636 * 4 2 1 6 6 O 1.20823 * 120.00372 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99425 * 179.97438 * 5 4 2 8 8 C 1.53007 * 109.46706 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.46985 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00151 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00154 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99842 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00255 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47242 * 60.00285 * 13 11 9 15 15 H 1.48507 * 109.47127 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47065 * 300.00164 * 13 11 9 17 17 C 1.50693 * 109.47389 * 239.99424 * 2 1 3 18 18 O 1.21288 * 120.00020 * 244.99797 * 17 2 1 19 19 N 1.34780 * 120.00262 * 65.00407 * 17 2 1 20 20 C 1.40020 * 120.00154 * 185.27834 * 19 17 2 21 21 C 1.38861 * 120.03709 * 33.29667 * 20 19 17 22 22 C 1.38123 * 120.00392 * 179.74501 * 21 20 19 23 23 C 1.38438 * 120.06551 * 0.27594 * 22 21 20 24 24 F 1.35096 * 119.96199 * 179.97438 * 23 22 21 25 25 C 1.38670 * 120.06890 * 0.02562 * 23 22 21 26 26 F 1.35102 * 119.99784 * 179.97438 * 25 23 22 27 27 C 1.38321 * 120.00014 * 359.95336 * 25 23 22 28 28 H 1.09003 * 109.47319 * 300.00862 * 1 2 3 29 29 H 1.09000 * 109.46970 * 60.00589 * 1 2 3 30 30 H 1.09004 * 109.46947 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47343 * 299.99061 * 7 5 4 32 32 H 1.08998 * 109.47474 * 59.99971 * 7 5 4 33 33 H 1.08996 * 109.46972 * 300.00267 * 8 7 5 34 34 H 1.08998 * 109.46882 * 59.99971 * 8 7 5 35 35 H 0.97006 * 120.00217 * 179.97438 * 12 11 9 36 36 H 0.97004 * 119.99323 * 5.27091 * 19 17 2 37 37 H 1.08008 * 119.99962 * 0.02562 * 21 20 19 38 38 H 1.07997 * 119.97227 * 180.24881 * 22 21 20 39 39 H 1.08000 * 120.03348 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6843 1.1857 5 6 2.2170 0.0643 2.2812 6 8 1.9980 1.2521 2.2503 7 6 2.7181 -0.5769 3.5496 8 6 2.8632 0.4896 4.6372 9 6 3.3637 -0.1516 5.9058 10 1 3.5591 -1.2135 5.9335 11 6 3.5732 0.6174 7.0308 12 7 3.3357 1.9105 6.9969 13 14 4.1942 -0.1773 8.6031 14 1 5.5137 -0.8098 8.3503 15 1 4.3350 0.8578 9.6587 16 1 3.2270 -1.2115 9.0505 17 6 2.0324 -0.7105 -1.2303 18 8 2.6531 -1.7468 -1.1212 19 7 1.7921 -0.1944 -2.4520 20 6 2.1610 -0.9083 -3.5986 21 6 2.1128 -2.2961 -3.5988 22 6 2.4719 -2.9995 -4.7320 23 6 2.8856 -2.3225 -5.8665 24 9 3.2368 -3.0126 -6.9735 25 6 2.9408 -0.9369 -5.8674 26 9 3.3452 -0.2777 -6.9752 27 6 2.5814 -0.2297 -4.7343 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.0085 -1.3364 3.8776 32 1 3.6869 -1.0405 3.3642 33 1 3.5729 1.2489 4.3089 34 1 1.8945 0.9535 4.8226 35 1 3.4827 2.4515 7.7885 36 1 1.3634 0.6717 -2.5368 37 1 1.7902 -2.8254 -2.7144 38 1 2.4304 -4.0786 -4.7330 39 1 2.6238 0.8495 -4.7345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618827.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:21 Heat of formation + Delta-G solvation = -209.828829 kcal Electronic energy + Delta-G solvation = -26263.913691 eV Core-core repulsion = 21806.917824 eV Total energy + Delta-G solvation = -4456.995867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.55111 -49.62883 -42.17654 -41.32267 -39.47902 -37.67770 -36.00473 -35.64600 -33.54594 -32.79679 -31.98246 -30.14582 -28.10623 -26.15558 -24.63600 -24.49278 -23.44338 -21.77528 -21.37631 -19.71231 -19.24385 -18.83720 -18.62345 -18.18661 -17.93969 -17.42883 -17.37686 -16.94893 -16.79354 -16.47619 -16.25058 -16.04840 -15.56804 -15.34732 -15.08419 -14.90840 -14.42049 -14.28853 -14.23493 -14.01580 -13.85682 -13.45912 -13.40782 -13.24334 -12.81697 -12.73728 -12.54427 -12.46039 -12.02953 -11.94651 -11.75104 -11.53014 -11.48097 -11.30241 -11.03660 -10.55899 -10.15120 -9.33173 -8.19435 -6.32601 -0.30634 -0.11944 1.04082 1.18206 1.21536 1.44590 1.47839 1.55569 2.01429 2.29818 2.44099 2.75355 3.14432 3.18799 3.26738 3.52152 3.69257 3.80527 3.81971 3.89569 3.94712 4.18930 4.40398 4.44556 4.60604 4.62023 4.63479 4.74041 4.89137 4.93667 4.97921 5.06922 5.10179 5.26584 5.47670 5.56595 5.64896 5.81221 6.07851 6.14362 6.71433 6.79103 6.85696 7.37349 8.92655 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.029403 B = 0.001895 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.040948 B =14771.298248 C =15051.978898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.060 3.940 3 H 0.119 0.881 4 O -0.340 6.340 5 C 0.471 3.529 6 O -0.531 6.531 7 C -0.096 4.096 8 C 0.040 3.960 9 C -0.546 4.546 10 H 0.075 0.925 11 C -0.002 4.002 12 N -0.933 5.933 13 Si 0.972 3.028 14 H -0.265 1.265 15 H -0.287 1.287 16 H -0.263 1.263 17 C 0.529 3.471 18 O -0.527 6.527 19 N -0.649 5.649 20 C 0.167 3.833 21 C -0.110 4.110 22 C -0.097 4.097 23 C 0.038 3.962 24 F -0.138 7.138 25 C 0.078 3.922 26 F -0.133 7.133 27 C -0.141 4.141 28 H 0.067 0.933 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.111 0.889 33 H -0.008 1.008 34 H -0.005 1.005 35 H 0.264 0.736 36 H 0.436 0.564 37 H 0.147 0.853 38 H 0.170 0.830 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.792 -6.494 -26.830 28.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.001 3.999 3 H 0.136 0.864 4 O -0.256 6.256 5 C 0.315 3.685 6 O -0.420 6.420 7 C -0.133 4.133 8 C 0.003 3.997 9 C -0.584 4.584 10 H 0.093 0.907 11 C -0.200 4.200 12 N -0.573 5.573 13 Si 0.796 3.204 14 H -0.190 1.190 15 H -0.213 1.213 16 H -0.188 1.188 17 C 0.316 3.684 18 O -0.402 6.402 19 N -0.298 5.298 20 C 0.072 3.928 21 C -0.130 4.130 22 C -0.116 4.116 23 C 0.017 3.983 24 F -0.117 7.117 25 C 0.057 3.943 26 F -0.112 7.112 27 C -0.161 4.161 28 H 0.086 0.914 29 H 0.137 0.863 30 H 0.096 0.904 31 H 0.135 0.865 32 H 0.129 0.871 33 H 0.010 0.990 34 H 0.014 0.986 35 H 0.073 0.927 36 H 0.277 0.723 37 H 0.164 0.836 38 H 0.187 0.813 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.426 -6.700 -26.695 28.263 hybrid contribution 0.348 0.630 0.365 0.807 sum -6.078 -6.070 -26.330 27.695 Atomic orbital electron populations 1.22204 0.89112 1.04786 1.05648 1.22633 0.97993 0.97708 0.81528 0.86362 1.86665 1.77324 1.41881 1.19754 1.24482 0.72929 0.85743 0.85303 1.90621 1.49121 1.17949 1.84309 1.21539 1.03725 1.00573 0.87504 1.18789 0.95737 0.93063 0.92089 1.21612 1.44749 0.95618 0.96398 0.90694 1.26052 0.95598 0.95308 1.03078 1.70135 1.49663 1.06772 1.30734 0.85403 0.79302 0.77995 0.77741 1.18966 1.21267 1.18765 1.20383 0.78498 0.85108 0.84416 1.90773 1.38535 1.24370 1.86493 1.43159 1.60468 1.23852 1.02296 1.17443 0.97754 0.91229 0.86368 1.21206 1.00138 0.92799 0.98853 1.21139 0.98128 1.02494 0.89819 1.17886 1.06485 0.88418 0.85499 1.91507 1.90009 1.79186 1.50987 1.17451 1.03502 0.88450 0.84905 1.91532 1.88254 1.80745 1.50639 1.20863 1.02126 1.02638 0.90517 0.91386 0.86314 0.90408 0.86535 0.87104 0.98996 0.98641 0.92732 0.72325 0.83555 0.81280 0.80480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.50 71.98 0.68 -1.76 16 2 C 0.06 1.29 2.98 29.85 0.09 1.38 16 3 H 0.12 2.47 7.16 -2.39 -0.02 2.45 16 4 O -0.34 -10.44 9.42 -45.05 -0.42 -10.86 16 5 C 0.47 17.36 7.93 71.24 0.56 17.92 16 6 O -0.53 -22.29 15.20 21.97 0.33 -21.95 16 7 C -0.10 -3.79 5.75 29.85 0.17 -3.61 16 8 C 0.04 2.13 4.26 29.85 0.13 2.26 16 9 C -0.55 -30.07 9.11 25.60 0.23 -29.83 16 10 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 11 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 12 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 13 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 14 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 15 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 17 C 0.53 10.54 6.92 87.65 0.61 11.15 16 18 O -0.53 -14.71 14.20 15.69 0.22 -14.48 16 19 N -0.65 -7.60 5.31 -303.48 -1.61 -9.21 16 20 C 0.17 2.29 6.28 38.12 0.24 2.53 16 21 C -0.11 -1.71 8.65 22.39 0.19 -1.51 16 22 C -0.10 -1.36 10.02 22.29 0.22 -1.14 16 23 C 0.04 0.63 7.30 22.42 0.16 0.80 16 24 F -0.14 -2.66 17.18 44.97 0.77 -1.89 16 25 C 0.08 1.23 7.30 22.39 0.16 1.40 16 26 F -0.13 -2.42 17.18 44.97 0.77 -1.64 16 27 C -0.14 -1.65 9.94 22.43 0.22 -1.43 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.12 0.81 8.11 -2.39 -0.02 0.79 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 32 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 33 H -0.01 -0.49 8.10 -2.39 -0.02 -0.51 16 34 H 0.00 -0.28 8.10 -2.39 -0.02 -0.30 16 35 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 36 H 0.44 1.72 8.79 -92.70 -0.81 0.91 16 37 H 0.15 2.56 6.41 -2.91 -0.02 2.54 16 38 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.18 1.08 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -75.47 355.43 6.82 -68.65 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 0.29 Total: 4.30 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 4.15 Total: -1.53 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -1.33 Total: -65.86 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: 0.13 Total: -47.30 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 1.55 Total: -3.54 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -75.47 6.82 -68.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618827.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.182 kcal (2) G-P(sol) polarization free energy of solvation -75.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds