Wall clock time and date at job start Tue Mar 31 2020 15:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47580 * 2 1 4 4 O 1.45201 * 109.47283 * 239.99663 * 2 1 3 5 5 C 1.34225 * 116.99537 * 90.00186 * 4 2 1 6 6 O 1.20819 * 120.00488 * 0.02562 * 5 4 2 7 7 C 1.50708 * 119.99532 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.46972 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47246 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99742 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99960 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00305 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00270 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47071 * 90.00212 * 13 11 9 15 15 H 1.48499 * 109.47564 * 210.00568 * 13 11 9 16 16 H 1.48504 * 109.47095 * 330.00378 * 13 11 9 17 17 C 1.50702 * 109.46607 * 120.00139 * 2 1 3 18 18 O 1.21289 * 120.00020 * 115.00047 * 17 2 1 19 19 N 1.34774 * 119.99994 * 294.99406 * 17 2 1 20 20 C 1.40027 * 120.00268 * 184.61656 * 19 17 2 21 21 C 1.38870 * 120.03720 * 144.91208 * 20 19 17 22 22 C 1.38122 * 119.99888 * 180.30156 * 21 20 19 23 23 C 1.38427 * 120.06924 * 359.44734 * 22 21 20 24 24 F 1.35104 * 119.96403 * 180.25462 * 23 22 21 25 25 C 1.38665 * 120.07039 * 0.55460 * 23 22 21 26 26 F 1.35102 * 120.00330 * 179.69849 * 25 23 22 27 27 C 1.38323 * 120.00160 * 359.72407 * 25 23 22 28 28 H 1.08994 * 109.47580 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47430 * 300.00260 * 1 2 3 30 30 H 1.09012 * 109.47004 * 59.99885 * 1 2 3 31 31 H 1.08990 * 109.47420 * 300.00047 * 7 5 4 32 32 H 1.08998 * 109.47202 * 60.00618 * 7 5 4 33 33 H 1.09001 * 109.47396 * 300.00083 * 8 7 5 34 34 H 1.09001 * 109.46991 * 59.99718 * 8 7 5 35 35 H 0.96998 * 120.00380 * 179.97438 * 12 11 9 36 36 H 0.97000 * 120.00066 * 4.62140 * 19 17 2 37 37 H 1.08001 * 119.99863 * 0.02899 * 21 20 19 38 38 H 1.08002 * 119.96245 * 179.72581 * 22 21 20 39 39 H 1.08006 * 120.03633 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2171 0.0640 -2.2810 6 8 1.9983 1.2518 -2.2503 7 6 2.7194 -0.5772 -3.5491 8 6 2.8645 0.4890 -4.6367 9 6 3.3662 -0.1521 -5.9050 10 1 3.5623 -1.2138 -5.9323 11 6 3.5758 0.6169 -7.0300 12 7 4.0131 0.0573 -8.1369 13 14 3.2372 2.4533 -6.9825 14 1 4.4674 3.1728 -6.5650 15 1 2.8272 2.9162 -8.3326 16 1 2.1480 2.7310 -6.0121 17 6 2.0322 -0.7105 1.2305 18 8 2.6528 -1.7468 1.1215 19 7 1.7918 -0.1942 2.4520 20 6 2.3399 -0.8008 3.5888 21 6 2.7485 -0.0221 4.6636 22 6 3.2948 -0.6208 5.7820 23 6 3.4251 -1.9978 5.8378 24 9 3.9550 -2.5816 6.9349 25 6 3.0180 -2.7782 4.7663 26 9 3.1514 -4.1216 4.8197 27 6 2.4759 -2.1813 3.6424 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8901 31 1 3.6884 -1.0401 -3.3630 32 1 2.0106 -1.3373 -3.8773 33 1 1.8957 0.9524 -4.8230 34 1 3.5735 1.2490 -4.3083 35 1 4.1601 0.5982 -8.9285 36 1 1.2390 0.5976 2.5437 37 1 2.6432 1.0520 4.6231 38 1 3.6164 -0.0143 6.6157 39 1 2.1583 -2.7886 2.8076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:24 Heat of formation + Delta-G solvation = -185.832364 kcal Electronic energy + Delta-G solvation = -26431.114869 eV Core-core repulsion = 21975.159567 eV Total energy + Delta-G solvation = -4455.955302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.81035 -48.88262 -41.29674 -40.23365 -38.72268 -36.48109 -35.24518 -33.70268 -32.50641 -31.40489 -31.30494 -29.51526 -26.70380 -25.28684 -24.04278 -23.14173 -21.97664 -20.85413 -19.94631 -18.98876 -18.21159 -18.07608 -17.67623 -17.09016 -16.81698 -16.61729 -16.36894 -16.14534 -15.55938 -15.36480 -15.28654 -14.87668 -14.49782 -14.33322 -14.09318 -13.87726 -13.73180 -13.31384 -13.15725 -12.87935 -12.73055 -12.68622 -12.47422 -12.04205 -11.81819 -11.51848 -11.07738 -10.92895 -10.80003 -10.40921 -10.27532 -10.16850 -10.01963 -9.77935 -9.49753 -9.30063 -8.71210 -8.59242 -6.10160 -4.10511 0.33249 0.50203 1.92091 2.00177 2.50991 2.88121 2.98015 3.30738 3.37882 3.38722 3.45347 3.83638 3.98956 4.15263 4.35308 4.42389 4.46825 4.57112 4.61339 4.79579 4.90018 5.24089 5.27720 5.29136 5.33831 5.36182 5.39246 5.57624 5.70154 5.75112 5.93408 5.95322 6.28449 6.33097 6.60348 6.68083 7.17025 7.24673 7.49447 7.65954 8.01435 8.43234 8.92337 9.50963 11.02389 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.026146 B = 0.002070 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.668840 B =13523.744591 C =13883.020167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.069 3.931 3 H 0.115 0.885 4 O -0.334 6.334 5 C 0.461 3.539 6 O -0.509 6.509 7 C -0.094 4.094 8 C -0.001 4.001 9 C -0.528 4.528 10 H 0.076 0.924 11 C 0.071 3.929 12 N -0.899 5.899 13 Si 0.878 3.122 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.262 1.262 17 C 0.519 3.481 18 O -0.487 6.487 19 N -0.670 5.670 20 C 0.170 3.830 21 C -0.125 4.125 22 C -0.104 4.104 23 C 0.050 3.950 24 F -0.129 7.129 25 C 0.091 3.909 26 F -0.123 7.123 27 C -0.132 4.132 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.026 0.974 34 H 0.021 0.979 35 H 0.265 0.735 36 H 0.418 0.582 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.329 0.965 30.304 31.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.010 3.990 3 H 0.132 0.868 4 O -0.251 6.251 5 C 0.305 3.695 6 O -0.396 6.396 7 C -0.132 4.132 8 C -0.039 4.039 9 C -0.566 4.566 10 H 0.094 0.906 11 C -0.131 4.131 12 N -0.537 5.537 13 Si 0.705 3.295 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.186 1.186 17 C 0.306 3.694 18 O -0.358 6.358 19 N -0.318 5.318 20 C 0.075 3.925 21 C -0.146 4.146 22 C -0.124 4.124 23 C 0.029 3.971 24 F -0.108 7.108 25 C 0.070 3.930 26 F -0.102 7.102 27 C -0.153 4.153 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.255 0.745 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.881 0.547 29.994 30.778 hybrid contribution -0.244 1.138 0.214 1.184 sum -7.126 1.685 30.208 31.083 Atomic orbital electron populations 1.22180 0.91561 1.04288 1.04345 1.22237 0.96106 0.97727 0.82944 0.86781 1.86748 1.77364 1.41798 1.19148 1.24973 0.73289 0.86291 0.84949 1.90611 1.48210 1.16913 1.83819 1.21597 1.02768 1.01486 0.87342 1.19494 0.97958 0.93682 0.92727 1.21019 1.44930 0.96944 0.93703 0.90574 1.24961 0.94284 0.98646 0.95241 1.69901 1.45721 1.36227 1.01883 0.86798 0.79552 0.85759 0.77421 1.20172 1.21299 1.18637 1.20585 0.79383 0.85563 0.83892 1.90777 1.37386 1.21795 1.85864 1.43395 1.52129 1.32229 1.04086 1.17399 0.96998 0.90847 0.87250 1.20848 1.00366 1.00555 0.92823 1.20853 1.00037 0.91756 0.99723 1.17685 1.03297 0.91612 0.84518 1.91536 1.83983 1.84468 1.50774 1.17460 1.02996 0.77843 0.94698 1.91560 1.93648 1.28436 1.96533 1.21225 1.01673 0.94481 0.97962 0.90588 0.90409 0.89858 0.88002 0.87987 0.95559 0.96038 0.92556 0.74493 0.83620 0.83058 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 9.49 37.16 0.35 -0.99 16 2 C 0.07 0.76 2.98 -27.88 -0.08 0.67 16 3 H 0.11 1.18 7.16 -51.93 -0.37 0.81 16 4 O -0.33 -5.09 9.42 -45.88 -0.43 -5.53 16 5 C 0.46 8.07 7.93 36.01 0.29 8.35 16 6 O -0.51 -9.76 15.20 -18.74 -0.28 -10.05 16 7 C -0.09 -1.80 5.75 -27.88 -0.16 -1.96 16 8 C 0.00 -0.03 3.33 -27.88 -0.09 -0.12 16 9 C -0.53 -14.68 9.66 -34.44 -0.33 -15.01 16 10 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 11 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 13 Si 0.88 21.70 27.47 -169.99 -4.67 17.04 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 16 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 17 C 0.52 5.53 7.03 -10.99 -0.08 5.45 16 18 O -0.49 -7.15 13.95 -14.06 -0.20 -7.34 16 19 N -0.67 -4.49 5.30 -9.85 -0.05 -4.54 16 20 C 0.17 1.30 6.30 -83.67 -0.53 0.77 16 21 C -0.13 -0.66 9.96 -39.39 -0.39 -1.05 16 22 C -0.10 -0.61 10.02 -39.55 -0.40 -1.01 16 23 C 0.05 0.44 7.30 -39.35 -0.29 0.15 16 24 F -0.13 -1.27 17.18 2.25 0.04 -1.23 16 25 C 0.09 0.92 7.30 -39.39 -0.29 0.63 16 26 F -0.12 -1.44 17.18 2.25 0.04 -1.40 16 27 C -0.13 -1.30 8.67 -39.34 -0.34 -1.64 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.34 7.78 -51.93 -0.40 -0.06 16 30 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 32 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 33 H 0.03 0.63 7.16 -51.93 -0.37 0.26 16 34 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.42 1.21 8.45 -40.82 -0.34 0.86 16 37 H 0.15 0.33 8.06 -52.49 -0.42 -0.09 16 38 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.16 1.84 6.22 -52.48 -0.33 1.51 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -34.89 350.88 -6.27 -41.15 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -4.33 Total: -3.03 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -2.44 Total: -3.81 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.72 Total: -31.09 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.91 Total: -22.92 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.08 Total: -2.63 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.89 -6.27 -41.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.681 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds