Wall clock time and date at job start Tue Mar 31 2020 15:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47580 * 2 1 4 4 O 1.45201 * 109.47283 * 239.99663 * 2 1 3 5 5 C 1.34225 * 116.99537 * 90.00186 * 4 2 1 6 6 O 1.20819 * 120.00488 * 0.02562 * 5 4 2 7 7 C 1.50708 * 119.99532 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.46972 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47246 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99742 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99960 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00305 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00270 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47071 * 90.00212 * 13 11 9 15 15 H 1.48499 * 109.47564 * 210.00568 * 13 11 9 16 16 H 1.48504 * 109.47095 * 330.00378 * 13 11 9 17 17 C 1.50702 * 109.46607 * 120.00139 * 2 1 3 18 18 O 1.21289 * 120.00020 * 115.00047 * 17 2 1 19 19 N 1.34774 * 119.99994 * 294.99406 * 17 2 1 20 20 C 1.40027 * 120.00268 * 184.61656 * 19 17 2 21 21 C 1.38870 * 120.03720 * 144.91208 * 20 19 17 22 22 C 1.38122 * 119.99888 * 180.30156 * 21 20 19 23 23 C 1.38427 * 120.06924 * 359.44734 * 22 21 20 24 24 F 1.35104 * 119.96403 * 180.25462 * 23 22 21 25 25 C 1.38665 * 120.07039 * 0.55460 * 23 22 21 26 26 F 1.35102 * 120.00330 * 179.69849 * 25 23 22 27 27 C 1.38323 * 120.00160 * 359.72407 * 25 23 22 28 28 H 1.08994 * 109.47580 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47430 * 300.00260 * 1 2 3 30 30 H 1.09012 * 109.47004 * 59.99885 * 1 2 3 31 31 H 1.08990 * 109.47420 * 300.00047 * 7 5 4 32 32 H 1.08998 * 109.47202 * 60.00618 * 7 5 4 33 33 H 1.09001 * 109.47396 * 300.00083 * 8 7 5 34 34 H 1.09001 * 109.46991 * 59.99718 * 8 7 5 35 35 H 0.96998 * 120.00380 * 179.97438 * 12 11 9 36 36 H 0.97000 * 120.00066 * 4.62140 * 19 17 2 37 37 H 1.08001 * 119.99863 * 0.02899 * 21 20 19 38 38 H 1.08002 * 119.96245 * 179.72581 * 22 21 20 39 39 H 1.08006 * 120.03633 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2171 0.0640 -2.2810 6 8 1.9983 1.2518 -2.2503 7 6 2.7194 -0.5772 -3.5491 8 6 2.8645 0.4890 -4.6367 9 6 3.3662 -0.1521 -5.9050 10 1 3.5623 -1.2138 -5.9323 11 6 3.5758 0.6169 -7.0300 12 7 4.0131 0.0573 -8.1369 13 14 3.2372 2.4533 -6.9825 14 1 4.4674 3.1728 -6.5650 15 1 2.8272 2.9162 -8.3326 16 1 2.1480 2.7310 -6.0121 17 6 2.0322 -0.7105 1.2305 18 8 2.6528 -1.7468 1.1215 19 7 1.7918 -0.1942 2.4520 20 6 2.3399 -0.8008 3.5888 21 6 2.7485 -0.0221 4.6636 22 6 3.2948 -0.6208 5.7820 23 6 3.4251 -1.9978 5.8378 24 9 3.9550 -2.5816 6.9349 25 6 3.0180 -2.7782 4.7663 26 9 3.1514 -4.1216 4.8197 27 6 2.4759 -2.1813 3.6424 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8901 31 1 3.6884 -1.0401 -3.3630 32 1 2.0106 -1.3373 -3.8773 33 1 1.8957 0.9524 -4.8230 34 1 3.5735 1.2490 -4.3083 35 1 4.1601 0.5982 -8.9285 36 1 1.2390 0.5976 2.5437 37 1 2.6432 1.0520 4.6231 38 1 3.6164 -0.0143 6.6157 39 1 2.1583 -2.7886 2.8076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:23 Heat of formation + Delta-G solvation = -207.535987 kcal Electronic energy + Delta-G solvation = -26432.056009 eV Core-core repulsion = 21975.159567 eV Total energy + Delta-G solvation = -4456.896442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.55757 -49.63564 -42.19372 -41.34264 -39.49348 -37.72277 -36.00025 -35.63796 -33.67502 -33.01821 -31.94288 -30.16670 -28.47426 -26.14953 -24.75838 -24.09812 -23.27088 -21.80955 -21.37527 -19.72120 -19.48765 -18.91048 -18.66513 -18.41606 -17.85823 -17.47229 -17.38776 -17.12466 -16.64432 -16.27880 -16.24617 -16.06473 -15.60209 -15.40910 -15.17964 -14.91055 -14.79933 -14.38549 -14.33826 -13.99243 -13.71594 -13.47413 -13.40494 -13.37807 -12.94052 -12.80269 -12.51414 -12.27192 -12.04354 -11.96724 -11.78432 -11.53469 -11.48199 -11.41446 -11.02428 -10.78343 -10.12624 -9.34819 -8.30856 -6.36047 -0.30219 -0.08740 1.01768 1.17657 1.19557 1.36706 1.38302 1.51691 2.01321 2.30194 2.35716 2.74935 3.04386 3.12763 3.34720 3.55007 3.67093 3.79546 3.84738 3.86431 3.95244 4.27753 4.28394 4.36626 4.57479 4.61525 4.69746 4.79422 4.82963 4.92973 4.95025 5.06155 5.10722 5.20465 5.30028 5.36436 5.58334 5.67390 6.09595 6.21598 6.65103 6.74160 6.81066 7.29033 8.84862 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.026146 B = 0.002070 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.668840 B =13523.744591 C =13883.020167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.062 3.938 3 H 0.127 0.873 4 O -0.343 6.343 5 C 0.475 3.525 6 O -0.526 6.526 7 C -0.094 4.094 8 C 0.005 3.995 9 C -0.535 4.535 10 H 0.046 0.954 11 C 0.011 3.989 12 N -0.944 5.944 13 Si 0.944 3.056 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.251 1.251 17 C 0.523 3.477 18 O -0.536 6.536 19 N -0.645 5.645 20 C 0.161 3.839 21 C -0.100 4.100 22 C -0.091 4.091 23 C 0.038 3.962 24 F -0.139 7.139 25 C 0.062 3.938 26 F -0.143 7.143 27 C -0.148 4.148 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.024 0.976 34 H 0.019 0.981 35 H 0.268 0.732 36 H 0.440 0.560 37 H 0.191 0.809 38 H 0.187 0.813 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.387 4.214 32.847 34.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.004 3.996 3 H 0.145 0.855 4 O -0.260 6.260 5 C 0.319 3.681 6 O -0.415 6.415 7 C -0.132 4.132 8 C -0.033 4.033 9 C -0.572 4.572 10 H 0.065 0.935 11 C -0.187 4.187 12 N -0.585 5.585 13 Si 0.768 3.232 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.175 1.175 17 C 0.310 3.690 18 O -0.410 6.410 19 N -0.295 5.295 20 C 0.066 3.934 21 C -0.120 4.120 22 C -0.109 4.109 23 C 0.017 3.983 24 F -0.118 7.118 25 C 0.042 3.958 26 F -0.122 7.122 27 C -0.170 4.170 28 H 0.090 0.910 29 H 0.140 0.860 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.042 0.958 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.281 0.719 37 H 0.208 0.792 38 H 0.204 0.796 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.972 3.815 32.590 33.767 hybrid contribution 0.080 0.062 -0.468 0.478 sum -7.892 3.877 32.123 33.305 Atomic orbital electron populations 1.22234 0.89113 1.04609 1.06001 1.22675 0.98006 0.97767 0.81189 0.85529 1.86673 1.77253 1.42094 1.19935 1.24277 0.72951 0.85697 0.85143 1.90596 1.49157 1.17429 1.84321 1.21358 1.03802 1.00416 0.87592 1.19318 0.97202 0.94508 0.92275 1.21352 1.44321 0.95937 0.95637 0.93525 1.25883 0.94232 1.03715 0.94877 1.70036 1.47401 1.38222 1.02801 0.85747 0.79889 0.79745 0.77859 1.19285 1.20620 1.17517 1.20562 0.78719 0.84862 0.84836 1.90782 1.39787 1.23896 1.86584 1.43106 1.51533 1.32278 1.02562 1.17562 0.97518 0.90184 0.88118 1.21287 0.97488 1.02329 0.90859 1.21289 0.98471 0.90399 1.00788 1.17990 1.03646 0.92785 0.83833 1.91508 1.84216 1.84911 1.51129 1.17731 1.04882 0.77339 0.95878 1.91497 1.94033 1.29911 1.96715 1.21122 1.02779 0.95740 0.97323 0.90968 0.85986 0.90929 0.87455 0.86914 0.95805 0.96272 0.92312 0.71861 0.79192 0.79588 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.49 71.98 0.68 -1.50 16 2 C 0.06 1.23 2.98 29.85 0.09 1.32 16 3 H 0.13 2.24 7.16 -2.39 -0.02 2.23 16 4 O -0.34 -10.15 9.42 -45.03 -0.42 -10.57 16 5 C 0.47 16.08 7.93 71.24 0.56 16.64 16 6 O -0.53 -19.26 15.20 21.99 0.33 -18.93 16 7 C -0.09 -3.55 5.75 29.85 0.17 -3.38 16 8 C 0.00 0.21 3.33 29.85 0.10 0.31 16 9 C -0.53 -30.17 9.66 25.60 0.25 -29.92 16 10 H 0.05 2.82 7.99 -2.91 -0.02 2.80 16 11 C 0.01 0.62 5.47 84.65 0.46 1.08 16 12 N -0.94 -58.47 13.96 21.45 0.30 -58.17 16 13 Si 0.94 44.49 27.47 68.60 1.88 46.38 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 16 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 17 C 0.52 10.32 7.03 87.66 0.62 10.94 16 18 O -0.54 -15.86 13.95 15.69 0.22 -15.64 16 19 N -0.65 -6.67 5.30 -303.47 -1.61 -8.28 16 20 C 0.16 2.07 6.30 38.12 0.24 2.31 16 21 C -0.10 -0.60 9.96 22.39 0.22 -0.38 16 22 C -0.09 -0.73 10.02 22.29 0.22 -0.51 16 23 C 0.04 0.63 7.30 22.42 0.16 0.79 16 24 F -0.14 -2.66 17.18 44.97 0.77 -1.88 16 25 C 0.06 1.30 7.30 22.39 0.16 1.47 16 26 F -0.14 -3.62 17.18 44.97 0.77 -2.84 16 27 C -0.15 -2.96 8.67 22.43 0.19 -2.76 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.12 0.53 7.78 -2.39 -0.02 0.51 16 30 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 32 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 33 H 0.02 1.12 7.16 -2.39 -0.02 1.10 16 34 H 0.02 0.90 7.53 -2.39 -0.02 0.88 16 35 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 36 H 0.44 0.47 8.45 -92.71 -0.78 -0.31 16 37 H 0.19 -0.47 8.06 -2.91 -0.02 -0.49 16 38 H 0.19 0.25 8.06 -2.91 -0.02 0.22 16 39 H 0.14 3.42 6.22 -2.91 -0.02 3.40 16 Total: -1.00 -79.43 350.88 6.66 -72.76 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: 0.27 Total: 0.76 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 4.14 Total: -3.59 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -1.31 Total: -66.45 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: 0.13 Total: -45.14 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 1.55 Total: -4.73 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.38 kcal Total: -79.43 6.66 -72.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.772 kcal (2) G-P(sol) polarization free energy of solvation -79.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds