Wall clock time and date at job start Tue Mar 31 2020 15:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34235 * 116.99964 * 2 1 4 4 O 1.20821 * 119.99799 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99996 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46667 * 299.99732 * 5 3 2 7 7 N 1.46498 * 109.47245 * 179.97438 * 5 3 2 8 8 C 1.34773 * 120.00061 * 155.92869 * 7 5 3 9 9 O 1.21283 * 120.00243 * 0.28183 * 8 7 5 10 10 C 1.50706 * 119.99807 * 179.97438 * 8 7 5 11 11 C 1.53004 * 109.46787 * 180.02562 * 10 8 7 12 12 C 1.50706 * 109.46787 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99989 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99669 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00109 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99824 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47471 * 59.99569 * 16 14 12 18 18 H 1.48503 * 109.47137 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47148 * 299.99612 * 16 14 12 20 20 C 1.50702 * 109.47158 * 59.99829 * 5 3 2 21 21 C 1.38205 * 119.99933 * 95.72797 * 20 5 3 22 22 C 1.38429 * 120.00070 * 179.77098 * 21 20 5 23 23 F 1.35096 * 119.99911 * 180.23459 * 22 21 20 24 24 C 1.38467 * 119.99899 * 0.52510 * 22 21 20 25 25 C 1.38169 * 119.99687 * 359.72568 * 24 22 21 26 26 C 1.38425 * 119.99978 * 276.00249 * 20 5 3 27 27 F 1.35105 * 120.00063 * 359.97438 * 26 20 5 28 28 H 1.09000 * 109.47311 * 59.99907 * 1 2 3 29 29 H 1.08999 * 109.47535 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47163 * 300.00219 * 1 2 3 31 31 H 0.97003 * 120.00205 * 335.93768 * 7 5 3 32 32 H 1.08999 * 109.47048 * 300.00157 * 10 8 7 33 33 H 1.08997 * 109.46900 * 60.00967 * 10 8 7 34 34 H 1.08990 * 109.47166 * 299.99967 * 11 10 8 35 35 H 1.08997 * 109.46902 * 60.00612 * 11 10 8 36 36 H 0.97003 * 119.99953 * 179.97438 * 15 14 12 37 37 H 1.08003 * 119.99739 * 0.02562 * 21 20 5 38 38 H 1.07994 * 120.00136 * 179.70617 * 24 22 21 39 39 H 1.08006 * 119.99339 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9563 0.7806 0.8892 7 7 3.9817 2.6798 -0.0011 8 6 5.1948 3.0239 0.4744 9 8 5.9448 2.1701 0.8981 10 6 5.6223 4.4691 0.4734 11 6 7.0304 4.5848 1.0607 12 6 7.4577 6.0300 1.0602 13 1 6.7914 6.7899 0.6795 14 6 8.6992 6.3820 1.5458 15 7 9.5107 5.4565 2.0089 16 14 9.2285 8.1734 1.5459 17 1 8.2826 8.9691 2.3688 18 1 10.5957 8.2856 2.1147 19 1 9.2284 8.6897 0.1535 20 6 4.1046 0.5920 -1.2314 21 6 4.4087 1.3347 -2.3566 22 6 4.9077 0.7080 -3.4855 23 9 5.2094 1.4347 -4.5837 24 6 5.0919 -0.6643 -3.4912 25 6 4.7830 -1.4074 -2.3681 26 6 4.2892 -0.7799 -1.2369 27 9 3.9872 -1.5065 -0.1387 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 3.3835 3.3623 -0.3435 32 1 5.6233 4.8469 -0.5490 33 1 4.9277 5.0539 1.0763 34 1 7.0298 4.2068 2.0830 35 1 7.7248 4.0001 0.4574 36 1 10.3843 5.7041 2.3502 37 1 4.2609 2.4045 -2.3536 38 1 5.4767 -1.1538 -4.3736 39 1 4.9264 -2.4779 -2.3727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812964372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:21 Heat of formation + Delta-G solvation = -185.821265 kcal Electronic energy + Delta-G solvation = -27777.116614 eV Core-core repulsion = 23321.161793 eV Total energy + Delta-G solvation = -4455.954821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.10356 -49.09866 -41.17270 -39.57394 -38.71093 -36.93297 -35.02700 -33.49301 -31.94479 -30.86822 -30.44744 -28.80913 -27.15217 -25.43834 -23.44364 -22.79331 -21.98700 -20.82173 -20.01825 -18.29852 -17.89506 -17.68139 -17.55625 -17.20786 -16.65833 -16.54359 -15.97467 -15.59211 -15.48192 -15.30033 -15.02678 -14.60212 -14.53032 -14.41807 -14.02007 -13.76639 -13.49327 -13.26470 -12.94818 -12.69692 -12.47041 -12.30371 -12.19431 -12.06001 -11.43093 -11.20622 -11.15782 -11.01277 -10.91565 -10.63114 -9.99420 -9.73777 -9.51579 -9.31652 -9.23137 -9.10751 -8.76983 -8.32877 -5.96939 -4.01560 0.59453 0.73283 1.74912 2.11356 2.97217 3.05576 3.34671 3.34821 3.39703 3.41915 3.83697 3.92113 4.13776 4.35179 4.39007 4.47399 4.66330 4.77650 4.80027 4.86473 4.98671 5.19054 5.31072 5.38188 5.46946 5.61622 5.70415 5.74693 5.77089 5.92183 6.15694 6.17958 6.30618 6.47855 6.81810 7.28262 7.62201 7.72466 7.82435 8.04643 8.34735 8.56068 9.06097 9.62150 11.13910 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013181 B = 0.003323 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.704974 B = 8424.890728 C = 9383.052991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.346 6.346 3 C 0.468 3.532 4 O -0.492 6.492 5 C 0.200 3.800 6 H 0.140 0.860 7 N -0.730 5.730 8 C 0.516 3.484 9 O -0.521 6.521 10 C -0.127 4.127 11 C 0.037 3.963 12 C -0.529 4.529 13 H 0.056 0.944 14 C 0.059 3.941 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.107 4.107 21 C -0.102 4.102 22 C 0.090 3.910 23 F -0.132 7.132 24 C -0.118 4.118 25 C -0.126 4.126 26 C 0.119 3.881 27 F -0.123 7.123 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.410 0.590 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.024 0.976 35 H 0.025 0.975 36 H 0.262 0.738 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.674 -15.400 -10.274 25.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.262 6.262 3 C 0.309 3.691 4 O -0.379 6.379 5 C 0.092 3.908 6 H 0.157 0.843 7 N -0.388 5.388 8 C 0.306 3.694 9 O -0.394 6.394 10 C -0.167 4.167 11 C 0.000 4.000 12 C -0.567 4.567 13 H 0.074 0.926 14 C -0.143 4.143 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.110 4.110 21 C -0.121 4.121 22 C 0.071 3.929 23 F -0.111 7.111 24 C -0.137 4.137 25 C -0.145 4.145 26 C 0.099 3.901 27 F -0.102 7.102 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.248 0.752 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -17.165 -15.738 -9.850 25.285 hybrid contribution -0.147 1.333 -0.119 1.346 sum -17.311 -14.405 -9.969 24.628 Atomic orbital electron populations 1.23347 0.75644 1.04042 1.02789 1.86535 1.23790 1.32214 1.83620 1.23363 0.91113 0.82049 0.72542 1.90685 1.66326 1.36182 1.44702 1.18831 0.86820 0.86537 0.98617 0.84275 1.46170 1.19646 1.05632 1.67309 1.21794 0.79220 0.93363 0.75072 1.90703 1.51773 1.52190 1.44727 1.21911 1.03013 0.88439 1.03309 1.18918 0.87479 0.96769 0.96855 1.21164 1.00914 0.92750 1.41873 0.92577 1.25012 0.96654 0.97331 0.95295 1.69983 1.08827 1.32678 1.41292 0.86646 0.77697 0.85236 0.78313 1.20227 1.21288 1.20229 1.19662 1.03426 0.92157 0.95754 1.20866 0.98889 1.01619 0.90715 1.17553 1.01658 0.89590 0.84101 1.91538 1.90875 1.77474 1.51178 1.21046 1.00990 0.91926 0.99735 1.20958 1.00702 1.01434 0.91411 1.17357 1.00083 0.88283 0.84386 1.91548 1.90508 1.76933 1.51171 0.91695 0.87730 0.91551 0.75238 0.89819 0.89717 0.95716 0.95692 0.92866 0.83432 0.83469 0.83248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.67 10.21 -39.27 -0.40 -4.07 16 3 C 0.47 5.74 7.31 36.00 0.26 6.00 16 4 O -0.49 -6.70 15.57 -18.75 -0.29 -7.00 16 5 C 0.20 2.66 2.44 -70.24 -0.17 2.48 16 6 H 0.14 1.99 7.29 -51.93 -0.38 1.61 16 7 N -0.73 -10.38 3.68 -56.07 -0.21 -10.59 16 8 C 0.52 9.54 7.77 -10.98 -0.09 9.46 16 9 O -0.52 -11.65 15.66 5.55 0.09 -11.56 16 10 C -0.13 -2.50 5.64 -27.88 -0.16 -2.66 16 11 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 12 C -0.53 -14.85 9.11 -34.44 -0.31 -15.17 16 13 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 16 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C -0.11 -1.36 4.94 -104.56 -0.52 -1.87 16 21 C -0.10 -1.25 9.30 -39.52 -0.37 -1.62 16 22 C 0.09 1.04 7.30 -39.43 -0.29 0.75 16 23 F -0.13 -1.61 17.27 2.25 0.04 -1.57 16 24 C -0.12 -1.09 10.02 -39.52 -0.40 -1.49 16 25 C -0.13 -1.17 10.02 -39.52 -0.40 -1.56 16 26 C 0.12 1.38 7.14 -39.43 -0.28 1.10 16 27 F -0.12 -1.48 16.41 2.25 0.04 -1.45 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.41 5.05 7.77 -40.82 -0.32 4.73 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 37 H 0.15 1.73 7.24 -52.48 -0.38 1.35 16 38 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.15 0.96 8.06 -52.48 -0.42 0.53 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -34.47 355.58 -5.94 -40.41 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -4.42 Total: 1.15 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.86 Total: -0.77 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.53 Total: -37.09 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.61 Total: -22.63 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.08 Total: -3.01 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.47 -5.94 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812964372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.411 kcal (2) G-P(sol) polarization free energy of solvation -34.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds