Wall clock time and date at job start Tue Mar 31 2020 15:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34235 * 116.99964 * 2 1 4 4 O 1.20821 * 119.99799 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99996 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46667 * 299.99732 * 5 3 2 7 7 N 1.46498 * 109.47245 * 179.97438 * 5 3 2 8 8 C 1.34773 * 120.00061 * 155.92869 * 7 5 3 9 9 O 1.21283 * 120.00243 * 0.28183 * 8 7 5 10 10 C 1.50706 * 119.99807 * 179.97438 * 8 7 5 11 11 C 1.53004 * 109.46787 * 180.02562 * 10 8 7 12 12 C 1.50706 * 109.46787 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99989 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99669 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00109 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99824 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47471 * 59.99569 * 16 14 12 18 18 H 1.48503 * 109.47137 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47148 * 299.99612 * 16 14 12 20 20 C 1.50702 * 109.47158 * 59.99829 * 5 3 2 21 21 C 1.38205 * 119.99933 * 95.72797 * 20 5 3 22 22 C 1.38429 * 120.00070 * 179.77098 * 21 20 5 23 23 F 1.35096 * 119.99911 * 180.23459 * 22 21 20 24 24 C 1.38467 * 119.99899 * 0.52510 * 22 21 20 25 25 C 1.38169 * 119.99687 * 359.72568 * 24 22 21 26 26 C 1.38425 * 119.99978 * 276.00249 * 20 5 3 27 27 F 1.35105 * 120.00063 * 359.97438 * 26 20 5 28 28 H 1.09000 * 109.47311 * 59.99907 * 1 2 3 29 29 H 1.08999 * 109.47535 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47163 * 300.00219 * 1 2 3 31 31 H 0.97003 * 120.00205 * 335.93768 * 7 5 3 32 32 H 1.08999 * 109.47048 * 300.00157 * 10 8 7 33 33 H 1.08997 * 109.46900 * 60.00967 * 10 8 7 34 34 H 1.08990 * 109.47166 * 299.99967 * 11 10 8 35 35 H 1.08997 * 109.46902 * 60.00612 * 11 10 8 36 36 H 0.97003 * 119.99953 * 179.97438 * 15 14 12 37 37 H 1.08003 * 119.99739 * 0.02562 * 21 20 5 38 38 H 1.07994 * 120.00136 * 179.70617 * 24 22 21 39 39 H 1.08006 * 119.99339 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9563 0.7806 0.8892 7 7 3.9817 2.6798 -0.0011 8 6 5.1948 3.0239 0.4744 9 8 5.9448 2.1701 0.8981 10 6 5.6223 4.4691 0.4734 11 6 7.0304 4.5848 1.0607 12 6 7.4577 6.0300 1.0602 13 1 6.7914 6.7899 0.6795 14 6 8.6992 6.3820 1.5458 15 7 9.5107 5.4565 2.0089 16 14 9.2285 8.1734 1.5459 17 1 8.2826 8.9691 2.3688 18 1 10.5957 8.2856 2.1147 19 1 9.2284 8.6897 0.1535 20 6 4.1046 0.5920 -1.2314 21 6 4.4087 1.3347 -2.3566 22 6 4.9077 0.7080 -3.4855 23 9 5.2094 1.4347 -4.5837 24 6 5.0919 -0.6643 -3.4912 25 6 4.7830 -1.4074 -2.3681 26 6 4.2892 -0.7799 -1.2369 27 9 3.9872 -1.5065 -0.1387 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 3.3835 3.3623 -0.3435 32 1 5.6233 4.8469 -0.5490 33 1 4.9277 5.0539 1.0763 34 1 7.0298 4.2068 2.0830 35 1 7.7248 4.0001 0.4574 36 1 10.3843 5.7041 2.3502 37 1 4.2609 2.4045 -2.3536 38 1 5.4767 -1.1538 -4.3736 39 1 4.9264 -2.4779 -2.3727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812964372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:20 Heat of formation + Delta-G solvation = -207.245342 kcal Electronic energy + Delta-G solvation = -27778.045631 eV Core-core repulsion = 23321.161793 eV Total energy + Delta-G solvation = -4456.883839 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.00587 -50.00094 -42.18945 -40.78799 -39.77199 -37.88022 -36.24112 -35.54736 -33.38219 -32.43263 -31.36643 -29.67683 -28.28337 -27.11803 -24.42953 -23.72725 -23.58602 -21.95854 -21.46604 -19.29108 -19.11111 -18.69830 -18.49400 -18.36830 -18.07015 -17.49468 -17.19772 -16.88353 -16.54230 -16.48066 -16.38919 -16.25665 -15.49546 -15.41171 -15.02450 -14.92373 -14.50207 -14.28798 -14.21100 -14.16324 -13.74006 -13.58798 -13.26461 -13.19481 -12.92653 -12.78088 -12.52264 -12.28319 -11.97794 -11.92409 -11.92280 -11.65673 -11.32771 -10.95188 -10.63190 -10.52467 -10.26426 -9.65006 -8.17094 -6.30717 -0.26404 -0.11124 0.77587 1.14298 1.43192 1.47118 1.54250 1.54938 2.02091 2.32062 2.44615 2.93539 3.06508 3.16183 3.25360 3.47166 3.53960 3.74280 3.91664 3.98952 4.13761 4.23866 4.30497 4.46803 4.50191 4.53459 4.67360 4.78172 4.84359 4.89459 4.95235 5.02765 5.05316 5.12808 5.50738 5.63373 5.65181 5.85722 6.17965 6.29031 6.38446 6.86524 7.11448 7.39299 8.95178 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013181 B = 0.003323 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.704974 B = 8424.890728 C = 9383.052991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.477 3.523 4 O -0.509 6.509 5 C 0.198 3.802 6 H 0.126 0.874 7 N -0.709 5.709 8 C 0.524 3.476 9 O -0.567 6.567 10 C -0.118 4.118 11 C 0.043 3.957 12 C -0.544 4.544 13 H 0.075 0.925 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.971 3.029 17 H -0.263 1.263 18 H -0.288 1.288 19 H -0.263 1.263 20 C -0.124 4.124 21 C -0.117 4.117 22 C 0.077 3.923 23 F -0.139 7.139 24 C -0.105 4.105 25 C -0.115 4.115 26 C 0.105 3.895 27 F -0.129 7.129 28 H 0.069 0.931 29 H 0.136 0.864 30 H 0.067 0.933 31 H 0.422 0.578 32 H 0.109 0.891 33 H 0.107 0.893 34 H -0.015 1.015 35 H -0.014 1.014 36 H 0.263 0.737 37 H 0.145 0.855 38 H 0.181 0.819 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.088 -15.354 -11.783 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.319 3.681 4 O -0.397 6.397 5 C 0.090 3.910 6 H 0.144 0.856 7 N -0.366 5.366 8 C 0.314 3.686 9 O -0.444 6.444 10 C -0.157 4.157 11 C 0.005 3.995 12 C -0.582 4.582 13 H 0.093 0.907 14 C -0.202 4.202 15 N -0.576 5.576 16 Si 0.795 3.205 17 H -0.188 1.188 18 H -0.213 1.213 19 H -0.188 1.188 20 C -0.127 4.127 21 C -0.136 4.136 22 C 0.057 3.943 23 F -0.117 7.117 24 C -0.124 4.124 25 C -0.133 4.133 26 C 0.085 3.915 27 F -0.107 7.107 28 H 0.087 0.913 29 H 0.154 0.846 30 H 0.085 0.915 31 H 0.262 0.738 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.004 0.996 35 H 0.005 0.995 36 H 0.071 0.929 37 H 0.163 0.837 38 H 0.198 0.802 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -18.651 -15.694 -11.389 26.905 hybrid contribution 0.220 1.198 0.323 1.260 sum -18.431 -14.496 -11.065 25.928 Atomic orbital electron populations 1.23700 0.73500 1.06242 1.03076 1.86521 1.25793 1.30999 1.83031 1.23027 0.90476 0.82403 0.72186 1.90674 1.66521 1.36739 1.45754 1.18822 0.87992 0.85298 0.98846 0.85634 1.45755 1.18282 1.06877 1.65680 1.21417 0.79984 0.92428 0.74790 1.90690 1.53466 1.53114 1.47140 1.21675 0.99441 0.90005 1.04599 1.18691 0.90811 0.95608 0.94341 1.21672 1.01421 0.93733 1.41407 0.90673 1.26086 0.96818 1.02579 0.94726 1.70160 1.09353 1.35486 1.42566 0.85410 0.77172 0.78848 0.79038 1.18808 1.21342 1.18770 1.19613 1.04743 0.92881 0.95425 1.20911 0.99786 1.01705 0.91229 1.17776 1.02175 0.90612 0.83711 1.91520 1.91000 1.77834 1.51362 1.21425 0.99323 0.90879 1.00752 1.21341 0.98815 1.03045 0.90124 1.17625 1.00712 0.88057 0.85094 1.91532 1.90648 1.76899 1.51633 0.91250 0.84629 0.91462 0.73837 0.87312 0.87493 0.99615 0.99520 0.92858 0.83678 0.80170 0.79893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.54 16 2 O -0.35 -7.02 10.21 -51.47 -0.53 -7.55 16 3 C 0.48 11.49 7.31 71.24 0.52 12.01 16 4 O -0.51 -13.48 15.57 21.98 0.34 -13.14 16 5 C 0.20 5.32 2.44 43.50 0.11 5.43 16 6 H 0.13 3.75 7.29 -2.39 -0.02 3.73 16 7 N -0.71 -20.25 3.68 -449.69 -1.65 -21.91 16 8 C 0.52 19.84 7.77 87.66 0.68 20.52 16 9 O -0.57 -26.63 15.66 -3.04 -0.05 -26.67 16 10 C -0.12 -4.65 5.64 29.85 0.17 -4.48 16 11 C 0.04 2.37 4.26 29.85 0.13 2.50 16 12 C -0.54 -30.80 9.11 25.60 0.23 -30.57 16 13 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 14 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 15 N -0.94 -59.06 13.29 21.45 0.28 -58.78 16 16 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 17 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 18 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 20 C -0.12 -3.12 4.94 -19.83 -0.10 -3.22 16 21 C -0.12 -2.85 9.30 22.31 0.21 -2.65 16 22 C 0.08 1.67 7.30 22.37 0.16 1.83 16 23 F -0.14 -3.24 17.27 44.97 0.78 -2.46 16 24 C -0.11 -1.68 10.02 22.31 0.22 -1.45 16 25 C -0.11 -1.84 10.02 22.31 0.22 -1.61 16 26 C 0.11 2.35 7.14 22.37 0.16 2.51 16 27 F -0.13 -3.02 16.41 44.97 0.74 -2.28 16 28 H 0.07 0.84 8.13 -2.39 -0.02 0.82 16 29 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 31 H 0.42 10.11 7.77 -92.71 -0.72 9.39 16 32 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 33 H 0.11 3.75 8.14 -2.39 -0.02 3.74 16 34 H -0.01 -0.90 8.10 -2.39 -0.02 -0.92 16 35 H -0.01 -0.84 8.10 -2.39 -0.02 -0.86 16 36 H 0.26 15.59 8.31 -92.71 -0.77 14.81 16 37 H 0.15 3.43 7.24 -2.91 -0.02 3.41 16 38 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 39 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -77.63 355.58 6.70 -70.93 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.39 Total: 12.98 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 4.38 Total: 2.57 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -1.37 Total: -80.68 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -0.23 Total: -47.36 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 1.51 Total: -4.74 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -77.63 6.70 -70.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812964372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.317 kcal (2) G-P(sol) polarization free energy of solvation -77.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds