Wall clock time and date at job start Tue Mar 31 2020 15:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34222 * 116.99653 * 2 1 4 4 O 1.20824 * 120.00467 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00006 * 179.97438 * 3 2 1 6 6 H 1.09007 * 109.47042 * 59.99422 * 5 3 2 7 7 N 1.46497 * 109.47430 * 180.02562 * 5 3 2 8 8 C 1.34777 * 119.99525 * 274.99668 * 7 5 3 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 7 5 11 11 C 1.53004 * 109.47208 * 180.27843 * 10 8 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99854 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00129 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47118 * 90.00195 * 16 14 12 18 18 H 1.48507 * 109.46904 * 209.99852 * 16 14 12 19 19 H 1.48494 * 109.47201 * 330.00027 * 16 14 12 20 20 C 1.50707 * 109.47097 * 300.00348 * 5 3 2 21 21 C 1.38202 * 119.99857 * 264.99837 * 20 5 3 22 22 C 1.38427 * 119.99993 * 179.97438 * 21 20 5 23 23 F 1.35105 * 119.99943 * 179.97438 * 22 21 20 24 24 C 1.38467 * 120.00075 * 359.97438 * 22 21 20 25 25 C 1.38162 * 120.00052 * 0.02562 * 24 22 21 26 26 C 1.38424 * 120.00163 * 84.71643 * 20 5 3 27 27 F 1.35105 * 120.00157 * 0.03141 * 26 20 5 28 28 H 1.08999 * 109.46792 * 59.99884 * 1 2 3 29 29 H 1.09000 * 109.46805 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47262 * 299.99933 * 1 2 3 31 31 H 0.97000 * 120.00580 * 95.00414 * 7 5 3 32 32 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 33 33 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 34 34 H 1.09000 * 109.46887 * 300.00372 * 11 10 8 35 35 H 1.08998 * 109.46846 * 59.99549 * 11 10 8 36 36 H 0.96999 * 120.00128 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.00283 * 359.97438 * 21 20 5 38 38 H 1.08002 * 120.00053 * 179.97438 * 24 22 21 39 39 H 1.08000 * 120.00403 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9565 0.7805 -0.8891 7 7 3.9817 2.6798 0.0011 8 6 4.0757 3.3550 -1.1615 9 8 3.8160 2.7998 -2.2081 10 6 4.4970 4.8019 -1.1605 11 6 4.5162 5.3286 -2.5970 12 6 4.9381 6.7753 -2.5960 13 1 5.1690 7.2698 -1.6640 14 6 5.0293 7.4675 -3.7849 15 7 5.3970 8.7302 -3.7841 16 14 4.6292 6.6123 -5.3967 17 1 3.1847 6.7766 -5.6990 18 1 5.4351 7.2138 -6.4895 19 1 4.9499 5.1669 -5.2831 20 6 4.1047 0.5920 1.2314 21 6 4.3946 1.3326 2.3617 22 6 4.8886 0.7052 3.4924 23 9 5.1725 1.4293 4.5971 24 6 5.0919 -0.6644 3.4912 25 6 4.8021 -1.4049 2.3613 26 6 4.3034 -0.7779 1.2319 27 9 4.0153 -1.5027 0.1287 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.1892 3.1240 0.8381 32 1 3.7913 5.3855 -0.5691 33 1 5.4936 4.8900 -0.7280 34 1 5.2217 4.7450 -3.1884 35 1 3.5196 5.2405 -3.0295 36 1 5.4616 9.2172 -4.6205 37 1 4.2357 2.4008 2.3627 38 1 5.4777 -1.1539 4.3733 39 1 4.9610 -2.4731 2.3602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812964374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:24 Heat of formation + Delta-G solvation = -179.887180 kcal Electronic energy + Delta-G solvation = -27661.152277 eV Core-core repulsion = 23205.454777 eV Total energy + Delta-G solvation = -4455.697500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.36500 -49.32434 -41.10005 -39.56163 -39.01684 -36.68682 -35.25775 -33.51754 -32.07459 -31.18525 -30.75660 -28.81125 -27.25741 -25.74230 -23.63246 -23.07055 -21.77198 -20.73496 -20.02099 -18.46110 -18.04752 -17.79043 -17.54928 -17.18927 -17.00450 -16.53247 -16.20921 -15.93800 -15.71825 -15.57105 -14.96576 -14.81272 -14.79199 -14.16582 -13.93884 -13.85647 -13.60584 -13.35132 -13.06343 -12.71070 -12.57912 -12.53178 -12.46079 -12.17092 -11.64045 -11.43984 -11.00044 -10.97924 -10.93157 -10.20270 -10.07395 -9.83884 -9.76500 -9.43775 -9.33919 -9.18917 -9.02250 -8.50364 -6.02619 -4.01524 0.31790 0.43634 1.96297 2.21690 2.74639 3.00277 3.22280 3.38837 3.45227 3.53040 3.55705 3.64955 3.85343 4.07108 4.34564 4.51405 4.52799 4.61332 4.82293 4.90691 4.99738 5.00680 5.27542 5.31438 5.32861 5.36441 5.41246 5.48068 5.51834 6.01565 6.06217 6.09267 6.17864 6.21146 6.63732 7.34635 7.41573 7.45216 7.52651 7.77915 8.38928 8.53260 9.00026 9.60225 11.10151 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.003245 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.040348 B = 8625.327190 C = 9599.509416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.452 3.548 4 O -0.482 6.482 5 C 0.202 3.798 6 H 0.141 0.859 7 N -0.722 5.722 8 C 0.520 3.480 9 O -0.530 6.530 10 C -0.119 4.119 11 C 0.001 3.999 12 C -0.525 4.525 13 H 0.073 0.927 14 C 0.070 3.930 15 N -0.903 5.903 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.261 1.261 20 C -0.103 4.103 21 C -0.114 4.114 22 C 0.096 3.904 23 F -0.130 7.130 24 C -0.116 4.116 25 C -0.121 4.121 26 C 0.121 3.879 27 F -0.120 7.120 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.405 0.595 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.025 0.975 35 H 0.020 0.980 36 H 0.263 0.737 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.554 -24.446 17.553 30.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.291 3.709 4 O -0.366 6.366 5 C 0.094 3.906 6 H 0.159 0.841 7 N -0.379 5.379 8 C 0.310 3.690 9 O -0.404 6.404 10 C -0.159 4.159 11 C -0.037 4.037 12 C -0.563 4.563 13 H 0.092 0.908 14 C -0.132 4.132 15 N -0.542 5.542 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.185 1.185 20 C -0.105 4.105 21 C -0.133 4.133 22 C 0.077 3.923 23 F -0.108 7.108 24 C -0.135 4.135 25 C -0.140 4.140 26 C 0.101 3.899 27 F -0.098 7.098 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.243 0.757 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.043 0.957 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.950 -24.354 16.633 29.755 hybrid contribution -0.421 -0.009 -0.439 0.608 sum -4.371 -24.363 16.193 29.578 Atomic orbital electron populations 1.23292 0.76087 1.03699 1.02729 1.86510 1.23553 1.32845 1.84071 1.23994 0.91846 0.81992 0.73043 1.90711 1.66188 1.36228 1.43523 1.18881 0.87326 0.85847 0.98581 0.84126 1.46115 1.70921 1.09680 1.11154 1.21750 0.74969 0.90154 0.82125 1.90672 1.48235 1.70061 1.31437 1.21696 1.02444 0.88003 1.03734 1.19392 0.97699 0.96565 0.90022 1.21086 1.46234 0.93887 0.95067 0.90847 1.24963 0.94406 0.94645 0.99176 1.69909 1.48135 1.08941 1.27191 0.86802 0.78674 0.80832 0.83290 1.20237 1.21412 1.18535 1.19344 1.03375 0.92477 0.95331 1.20804 1.00038 1.01471 0.90996 1.17501 1.01470 0.89655 0.83714 1.91560 1.91169 1.77526 1.50583 1.21095 1.00801 0.91930 0.99690 1.21016 1.00215 1.01626 0.91169 1.17351 0.99895 0.88159 0.84515 1.91583 1.90729 1.76909 1.50573 0.91650 0.87970 0.91920 0.75682 0.89081 0.89139 0.95699 0.96173 0.92700 0.83353 0.83225 0.82972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.35 -4.32 10.34 -39.24 -0.41 -4.72 16 3 C 0.45 6.47 7.28 36.01 0.26 6.73 16 4 O -0.48 -8.30 16.07 -18.75 -0.30 -8.60 16 5 C 0.20 2.59 2.46 -70.23 -0.17 2.41 16 6 H 0.14 1.92 7.24 -51.93 -0.38 1.54 16 7 N -0.72 -9.90 4.53 -56.06 -0.25 -10.15 16 8 C 0.52 9.54 7.66 -10.98 -0.08 9.46 16 9 O -0.53 -11.70 15.65 5.55 0.09 -11.61 16 10 C -0.12 -2.31 5.64 -27.88 -0.16 -2.46 16 11 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 12 C -0.52 -15.06 9.66 -34.44 -0.33 -15.40 16 13 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 14 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 16 Si 0.88 22.74 27.47 -169.99 -4.67 18.08 16 17 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.26 -6.71 6.54 56.52 0.37 -6.35 16 20 C -0.10 -1.01 4.99 -104.56 -0.52 -1.53 16 21 C -0.11 -0.97 9.21 -39.52 -0.36 -1.33 16 22 C 0.10 0.74 7.30 -39.43 -0.29 0.46 16 23 F -0.13 -1.12 17.27 2.25 0.04 -1.08 16 24 C -0.12 -0.68 10.02 -39.52 -0.40 -1.08 16 25 C -0.12 -0.74 10.02 -39.52 -0.40 -1.14 16 26 C 0.12 1.06 7.17 -39.43 -0.28 0.78 16 27 F -0.12 -1.20 16.49 2.25 0.04 -1.16 16 28 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.41 4.30 6.20 -40.82 -0.25 4.05 16 32 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 33 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.02 0.64 7.16 -51.93 -0.37 0.27 16 35 H 0.02 0.53 7.53 -51.93 -0.39 0.13 16 36 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 37 H 0.15 1.10 6.07 -52.49 -0.32 0.78 16 38 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -36.49 350.60 -5.52 -42.01 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -4.25 Total: -0.91 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.86 Total: 0.20 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.52 Total: -37.48 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.62 Total: -24.94 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.08 Total: -2.24 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.67 Total: 18.08 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.49 -5.52 -42.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812964374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.875 kcal (2) G-P(sol) polarization free energy of solvation -36.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds