Wall clock time and date at job start Tue Mar 31 2020 15:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34222 * 116.99653 * 2 1 4 4 O 1.20824 * 120.00467 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00006 * 179.97438 * 3 2 1 6 6 H 1.09007 * 109.47042 * 59.99422 * 5 3 2 7 7 N 1.46497 * 109.47430 * 180.02562 * 5 3 2 8 8 C 1.34777 * 119.99525 * 274.99668 * 7 5 3 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 7 5 11 11 C 1.53004 * 109.47208 * 180.27843 * 10 8 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99854 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00129 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47118 * 90.00195 * 16 14 12 18 18 H 1.48507 * 109.46904 * 209.99852 * 16 14 12 19 19 H 1.48494 * 109.47201 * 330.00027 * 16 14 12 20 20 C 1.50707 * 109.47097 * 300.00348 * 5 3 2 21 21 C 1.38202 * 119.99857 * 264.99837 * 20 5 3 22 22 C 1.38427 * 119.99993 * 179.97438 * 21 20 5 23 23 F 1.35105 * 119.99943 * 179.97438 * 22 21 20 24 24 C 1.38467 * 120.00075 * 359.97438 * 22 21 20 25 25 C 1.38162 * 120.00052 * 0.02562 * 24 22 21 26 26 C 1.38424 * 120.00163 * 84.71643 * 20 5 3 27 27 F 1.35105 * 120.00157 * 0.03141 * 26 20 5 28 28 H 1.08999 * 109.46792 * 59.99884 * 1 2 3 29 29 H 1.09000 * 109.46805 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47262 * 299.99933 * 1 2 3 31 31 H 0.97000 * 120.00580 * 95.00414 * 7 5 3 32 32 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 33 33 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 34 34 H 1.09000 * 109.46887 * 300.00372 * 11 10 8 35 35 H 1.08998 * 109.46846 * 59.99549 * 11 10 8 36 36 H 0.96999 * 120.00128 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.00283 * 359.97438 * 21 20 5 38 38 H 1.08002 * 120.00053 * 179.97438 * 24 22 21 39 39 H 1.08000 * 120.00403 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9565 0.7805 -0.8891 7 7 3.9817 2.6798 0.0011 8 6 4.0757 3.3550 -1.1615 9 8 3.8160 2.7998 -2.2081 10 6 4.4970 4.8019 -1.1605 11 6 4.5162 5.3286 -2.5970 12 6 4.9381 6.7753 -2.5960 13 1 5.1690 7.2698 -1.6640 14 6 5.0293 7.4675 -3.7849 15 7 5.3970 8.7302 -3.7841 16 14 4.6292 6.6123 -5.3967 17 1 3.1847 6.7766 -5.6990 18 1 5.4351 7.2138 -6.4895 19 1 4.9499 5.1669 -5.2831 20 6 4.1047 0.5920 1.2314 21 6 4.3946 1.3326 2.3617 22 6 4.8886 0.7052 3.4924 23 9 5.1725 1.4293 4.5971 24 6 5.0919 -0.6644 3.4912 25 6 4.8021 -1.4049 2.3613 26 6 4.3034 -0.7779 1.2319 27 9 4.0153 -1.5027 0.1287 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.1892 3.1240 0.8381 32 1 3.7913 5.3855 -0.5691 33 1 5.4936 4.8900 -0.7280 34 1 5.2217 4.7450 -3.1884 35 1 3.5196 5.2405 -3.0295 36 1 5.4616 9.2172 -4.6205 37 1 4.2357 2.4008 2.3627 38 1 5.4777 -1.1539 4.3733 39 1 4.9610 -2.4731 2.3602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812964374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:23 Heat of formation + Delta-G solvation = -203.876758 kcal Electronic energy + Delta-G solvation = -27662.192543 eV Core-core repulsion = 23205.454777 eV Total energy + Delta-G solvation = -4456.737766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.01411 -49.97823 -42.18318 -40.71385 -39.93185 -37.77821 -36.38162 -35.57008 -33.55154 -32.64133 -31.42112 -29.69318 -28.50051 -27.23011 -24.39088 -23.87330 -23.27560 -21.93844 -21.45245 -19.50161 -19.23052 -18.72606 -18.48483 -18.39494 -18.05762 -17.49627 -17.43760 -16.88320 -16.73431 -16.39180 -16.30805 -16.22695 -15.52802 -15.39959 -15.06767 -14.90103 -14.73831 -14.54564 -14.30459 -14.24288 -13.70142 -13.52780 -13.43354 -13.22537 -12.96023 -12.92467 -12.29917 -12.13134 -12.05489 -11.99750 -11.93409 -11.79304 -11.42531 -11.05481 -10.79641 -10.63616 -10.31374 -9.66192 -8.32294 -6.35199 -0.29826 -0.13357 0.87169 1.14451 1.32486 1.34147 1.48996 1.63242 1.96283 2.29957 2.34073 2.79021 3.03379 3.03484 3.20504 3.46494 3.58759 3.73777 3.87724 3.90662 4.11351 4.21282 4.23917 4.31954 4.44701 4.46739 4.60978 4.73236 4.81939 4.89123 4.92595 4.98882 5.03272 5.13567 5.32466 5.41151 5.58984 5.63111 6.18998 6.26336 6.45451 6.70629 7.02826 7.30036 8.83331 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.003245 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.040348 B = 8625.327190 C = 9599.509416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.453 3.547 4 O -0.519 6.519 5 C 0.203 3.797 6 H 0.131 0.869 7 N -0.703 5.703 8 C 0.526 3.474 9 O -0.573 6.573 10 C -0.114 4.114 11 C 0.005 3.995 12 C -0.528 4.528 13 H 0.052 0.948 14 C 0.015 3.985 15 N -0.943 5.943 16 Si 0.937 3.063 17 H -0.272 1.272 18 H -0.276 1.276 19 H -0.260 1.260 20 C -0.117 4.117 21 C -0.120 4.120 22 C 0.088 3.912 23 F -0.136 7.136 24 C -0.099 4.099 25 C -0.108 4.108 26 C 0.109 3.891 27 F -0.130 7.130 28 H 0.054 0.946 29 H 0.139 0.861 30 H 0.067 0.933 31 H 0.421 0.579 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.015 0.985 35 H 0.005 0.995 36 H 0.268 0.732 37 H 0.152 0.848 38 H 0.182 0.818 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.373 -27.092 19.122 33.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.294 3.706 4 O -0.407 6.407 5 C 0.095 3.905 6 H 0.148 0.852 7 N -0.359 5.359 8 C 0.315 3.685 9 O -0.451 6.451 10 C -0.154 4.154 11 C -0.033 4.033 12 C -0.566 4.566 13 H 0.071 0.929 14 C -0.183 4.183 15 N -0.583 5.583 16 Si 0.761 3.239 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.184 1.184 20 C -0.118 4.118 21 C -0.139 4.139 22 C 0.069 3.931 23 F -0.114 7.114 24 C -0.118 4.118 25 C -0.127 4.127 26 C 0.089 3.911 27 F -0.109 7.109 28 H 0.073 0.927 29 H 0.157 0.843 30 H 0.085 0.915 31 H 0.262 0.738 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.034 0.966 35 H 0.024 0.976 36 H 0.077 0.923 37 H 0.170 0.830 38 H 0.200 0.800 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.765 -27.029 18.261 32.836 hybrid contribution -0.494 0.755 -0.784 1.195 sum -4.259 -26.274 17.477 31.842 Atomic orbital electron populations 1.23611 0.74395 1.06054 1.02448 1.86505 1.25206 1.31607 1.83379 1.24260 0.92390 0.82032 0.71957 1.90691 1.67097 1.37377 1.45550 1.18897 0.86756 0.84860 1.00024 0.85166 1.45774 1.69362 1.10296 1.10492 1.21396 0.74650 0.89772 0.82664 1.90654 1.50449 1.70801 1.33170 1.21525 1.04402 0.89034 1.00439 1.19239 0.96201 0.94382 0.93526 1.21398 1.45372 0.95607 0.94265 0.92944 1.25782 0.94548 0.95275 1.02719 1.70018 1.49610 1.10357 1.28318 0.85855 0.78728 0.79718 0.79582 1.19722 1.20146 1.18409 1.19098 1.05316 0.93009 0.94424 1.20833 1.00266 1.01749 0.91040 1.17645 1.01746 0.90481 0.83229 1.91551 1.91255 1.77859 1.50755 1.21465 0.98816 0.90972 1.00511 1.21341 0.98422 1.03075 0.89818 1.17613 1.00558 0.87776 0.85115 1.91558 1.90955 1.77024 1.51346 0.92730 0.84295 0.91472 0.73824 0.87889 0.86788 0.96619 0.97647 0.92345 0.83002 0.80032 0.79876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.68 16 2 O -0.35 -8.33 10.34 -51.34 -0.53 -8.87 16 3 C 0.45 12.94 7.28 71.24 0.52 13.45 16 4 O -0.52 -18.10 16.07 21.97 0.35 -17.75 16 5 C 0.20 5.14 2.46 43.50 0.11 5.25 16 6 H 0.13 3.61 7.24 -2.38 -0.02 3.59 16 7 N -0.70 -18.98 4.53 -449.67 -2.04 -21.01 16 8 C 0.53 19.25 7.66 87.66 0.67 19.92 16 9 O -0.57 -25.66 15.65 -3.04 -0.05 -25.70 16 10 C -0.11 -4.39 5.64 29.85 0.17 -4.23 16 11 C 0.00 0.23 3.33 29.85 0.10 0.33 16 12 C -0.53 -30.75 9.66 25.60 0.25 -30.50 16 13 H 0.05 3.19 7.99 -2.91 -0.02 3.17 16 14 C 0.01 0.87 5.47 84.65 0.46 1.34 16 15 N -0.94 -59.44 13.96 21.45 0.30 -59.14 16 16 Si 0.94 47.32 27.47 68.60 1.88 49.20 16 17 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 18 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.26 -12.99 6.54 99.48 0.65 -12.33 16 20 C -0.12 -2.14 4.99 -19.83 -0.10 -2.24 16 21 C -0.12 -1.84 9.21 22.31 0.21 -1.64 16 22 C 0.09 1.14 7.30 22.37 0.16 1.31 16 23 F -0.14 -2.04 17.27 44.97 0.78 -1.26 16 24 C -0.10 -0.78 10.02 22.31 0.22 -0.56 16 25 C -0.11 -0.93 10.02 22.31 0.22 -0.71 16 26 C 0.11 1.71 7.17 22.37 0.16 1.87 16 27 F -0.13 -2.44 16.49 44.97 0.74 -1.70 16 28 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 29 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.12 8.13 -2.39 -0.02 1.10 16 31 H 0.42 8.55 6.20 -92.71 -0.58 7.97 16 32 H 0.10 3.70 8.14 -2.38 -0.02 3.68 16 33 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 34 H 0.02 0.81 7.16 -2.39 -0.02 0.79 16 35 H 0.01 0.27 7.53 -2.39 -0.02 0.26 16 36 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 37 H 0.15 2.08 6.07 -2.91 -0.02 2.06 16 38 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 39 H 0.18 0.45 8.06 -2.91 -0.02 0.43 16 Total: -1.00 -80.40 350.60 6.27 -74.13 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 0.48 Total: 6.83 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 4.35 Total: 5.27 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -1.74 Total: -80.16 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -0.23 Total: -52.32 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 1.52 Total: -2.96 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.88 Total: 49.20 kcal Total: -80.40 6.27 -74.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812964374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.746 kcal (2) G-P(sol) polarization free energy of solvation -80.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds