Wall clock time and date at job start Tue Mar 31 2020 14:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39896 * 109.47079 * 2 1 4 4 F 1.39896 * 109.47542 * 239.99442 * 2 1 3 5 5 C 1.50708 * 109.46787 * 119.99768 * 2 1 3 6 6 O 1.21290 * 119.99946 * 97.83963 * 5 2 1 7 7 N 1.34772 * 119.99670 * 277.83579 * 5 2 1 8 8 C 1.46501 * 120.00376 * 358.98006 * 7 5 2 9 9 C 1.50703 * 109.46967 * 277.51609 * 8 7 5 10 10 H 1.08001 * 119.99999 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00134 * 180.02562 * 9 8 7 12 12 N 1.31509 * 119.99642 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00063 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47043 * 89.99648 * 13 11 9 15 15 H 1.48494 * 109.47218 * 209.99680 * 13 11 9 16 16 H 1.48505 * 109.46874 * 329.99840 * 13 11 9 17 17 C 1.40105 * 120.00006 * 178.97279 * 7 5 2 18 18 C 1.38845 * 120.01817 * 175.71495 * 17 7 5 19 19 C 1.38127 * 120.03591 * 179.75618 * 18 17 7 20 20 C 1.38719 * 120.16134 * 0.24211 * 19 18 17 21 21 C 1.38993 * 119.93085 * 359.94957 * 20 19 18 22 22 C 1.38649 * 119.88924 * 0.11130 * 21 20 19 23 23 O 1.36112 * 120.78100 * 180.20079 * 21 20 19 24 24 C 1.43178 * 116.71516 * 342.71575 * 23 21 20 25 25 C 1.53476 * 108.22568 * 46.27638 * 24 23 21 26 26 O 1.36197 * 119.31548 * 179.81026 * 20 19 18 27 27 H 1.08998 * 109.47291 * 314.66497 * 1 2 3 28 28 H 1.09003 * 109.46754 * 74.66462 * 1 2 3 29 29 H 1.09004 * 109.47280 * 194.66380 * 1 2 3 30 30 H 1.09002 * 109.47139 * 37.51378 * 8 7 5 31 31 H 1.09002 * 109.47566 * 157.52010 * 8 7 5 32 32 H 0.97003 * 119.99912 * 180.02562 * 12 11 9 33 33 H 1.08000 * 119.98115 * 0.02937 * 18 17 7 34 34 H 1.07998 * 119.92459 * 180.26742 * 19 18 17 35 35 H 1.07996 * 119.99553 * 179.89083 * 22 21 20 36 36 H 1.08994 * 109.71317 * 286.58984 * 24 23 21 37 37 H 1.09004 * 109.71279 * 165.95308 * 24 23 21 38 38 H 1.09001 * 109.70672 * 180.54432 * 25 24 23 39 39 H 1.08998 * 109.74285 * 59.93912 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0323 -0.7104 1.2306 6 8 2.3695 -1.8736 1.1641 7 7 2.1068 -0.0531 2.4048 8 6 1.7208 1.3581 2.4802 9 6 2.8726 2.2187 2.0289 10 1 3.7996 1.7604 1.7175 11 6 2.7434 3.5914 2.0145 12 7 1.6147 4.1495 2.3942 13 14 4.1714 4.6582 1.4558 14 1 4.0780 4.8826 -0.0092 15 1 4.1192 5.9641 2.1609 16 1 5.4521 3.9759 1.7715 17 6 2.5534 -0.7195 3.5535 18 6 2.7151 -0.0214 4.7427 19 6 3.1505 -0.6790 5.8767 20 6 3.4322 -2.0366 5.8303 21 6 3.2750 -2.7372 4.6402 22 6 2.8391 -2.0764 3.5019 23 8 3.5424 -4.0702 4.5761 24 6 4.3330 -4.6198 5.6358 25 6 3.7802 -4.0961 6.9683 26 8 3.8641 -2.6669 6.9577 27 1 -0.3634 0.7224 0.7309 28 1 -0.3633 0.2718 -0.9911 29 1 -0.3634 -0.9942 0.2602 30 1 0.8606 1.5345 1.8344 31 1 1.4607 1.6093 3.5085 32 1 1.5236 5.1152 2.3837 33 1 2.4962 1.0354 4.7823 34 1 3.2716 -0.1352 6.8019 35 1 2.7181 -2.6187 2.5758 36 1 5.3709 -4.3075 5.5201 37 1 4.2712 -5.7078 5.6144 38 1 4.3721 -4.4930 7.7931 39 1 2.7403 -4.4025 7.0814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815373193.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:22 Heat of formation + Delta-G solvation = -160.136242 kcal Electronic energy + Delta-G solvation = -29062.494748 eV Core-core repulsion = 24607.653713 eV Total energy + Delta-G solvation = -4454.841035 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.07249 -48.07314 -42.37274 -41.43230 -38.68716 -38.17531 -36.78018 -34.59413 -32.97731 -31.92656 -31.33709 -29.43266 -29.04021 -26.32040 -25.71510 -24.60271 -23.99972 -22.15770 -21.07406 -19.63151 -19.20837 -18.89206 -18.60243 -18.22402 -17.88974 -17.56440 -17.19760 -16.56352 -16.44481 -16.16481 -15.87039 -15.76231 -15.32326 -15.07433 -14.92484 -14.63389 -14.53213 -14.47843 -14.28354 -14.06492 -13.83768 -13.57859 -13.48277 -13.18065 -12.93485 -12.91719 -12.71773 -12.60339 -12.37564 -12.09784 -11.97398 -11.72882 -11.60431 -10.63757 -10.57929 -10.40004 -9.54815 -8.65160 -8.18131 -6.25358 0.05295 0.28286 1.10194 1.41807 1.45321 1.47351 1.54116 2.07583 2.29977 2.42168 2.69879 2.74449 2.89527 3.15013 3.35007 3.42915 3.60760 3.72797 3.97466 4.08853 4.11242 4.23272 4.33308 4.40920 4.46415 4.54360 4.57419 4.61877 4.77371 4.85351 5.05288 5.08820 5.16507 5.22561 5.39728 5.67645 5.82616 5.92181 5.97099 6.13515 6.45317 6.63718 6.77274 7.38550 8.87801 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013356 B = 0.004699 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.896414 B = 5957.435461 C = 7390.885136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.274 3.726 3 F -0.160 7.160 4 F -0.189 7.189 5 C 0.477 3.523 6 O -0.528 6.528 7 N -0.516 5.516 8 C 0.231 3.769 9 C -0.523 4.523 10 H 0.042 0.958 11 C 0.035 3.965 12 N -0.911 5.911 13 Si 0.943 3.057 14 H -0.278 1.278 15 H -0.276 1.276 16 H -0.278 1.278 17 C 0.145 3.855 18 C -0.140 4.140 19 C -0.087 4.087 20 C 0.021 3.979 21 C 0.064 3.936 22 C -0.188 4.188 23 O -0.324 6.324 24 C 0.011 3.989 25 C 0.016 3.984 26 O -0.318 6.318 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.269 0.731 33 H 0.144 0.856 34 H 0.161 0.839 35 H 0.174 0.826 36 H 0.076 0.924 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.690 -12.602 6.428 14.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.234 3.766 3 F -0.141 7.141 4 F -0.170 7.170 5 C 0.264 3.736 6 O -0.408 6.408 7 N -0.236 5.236 8 C 0.112 3.888 9 C -0.561 4.561 10 H 0.060 0.940 11 C -0.166 4.166 12 N -0.551 5.551 13 Si 0.770 3.230 14 H -0.203 1.203 15 H -0.202 1.202 16 H -0.203 1.203 17 C 0.050 3.950 18 C -0.161 4.161 19 C -0.106 4.106 20 C -0.025 4.025 21 C 0.018 3.982 22 C -0.208 4.208 23 O -0.239 6.239 24 C -0.063 4.063 25 C -0.058 4.058 26 O -0.233 6.233 27 H 0.120 0.880 28 H 0.135 0.865 29 H 0.121 0.879 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.161 0.839 34 H 0.178 0.822 35 H 0.190 0.810 36 H 0.095 0.905 37 H 0.174 0.826 38 H 0.176 0.824 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.595 -12.999 6.372 14.489 hybrid contribution 0.995 0.799 -0.545 1.387 sum 0.400 -12.201 5.827 13.527 Atomic orbital electron populations 1.22867 0.86577 1.06741 1.07971 1.21059 0.97238 0.76609 0.81677 1.93386 1.90264 1.34264 1.96171 1.93011 1.91026 1.81410 1.51536 1.21389 0.79260 0.87067 0.85884 1.90345 1.49067 1.17110 1.84279 1.45883 1.58006 1.13770 1.05893 1.19859 0.96685 0.72474 0.99738 1.21273 0.98957 0.91539 1.44350 0.93974 1.25295 0.97795 0.98401 0.95078 1.69938 1.25715 1.11638 1.47768 0.85774 0.80120 0.78572 0.78571 1.20337 1.20157 1.20310 1.17833 0.99101 0.90943 0.87075 1.20904 1.03502 1.00951 0.90706 1.20403 0.99651 0.91208 0.99371 1.18908 1.04760 0.93501 0.85332 1.18701 1.02311 0.84457 0.92736 1.21760 1.05600 0.93358 1.00065 1.86277 1.69487 1.18862 1.49288 1.24024 0.94583 1.02092 0.85648 1.23949 1.03981 0.77914 1.00004 1.86270 1.80618 1.22073 1.34349 0.88038 0.86476 0.87869 0.92813 0.93178 0.92218 0.83883 0.82155 0.80983 0.90542 0.82633 0.82398 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.23 9.27 71.98 0.67 -4.56 16 2 C 0.27 10.50 2.05 29.85 0.06 10.56 16 3 F -0.16 -7.13 12.19 44.97 0.55 -6.58 16 4 F -0.19 -7.29 16.76 44.97 0.75 -6.54 16 5 C 0.48 20.25 6.67 87.66 0.58 20.84 16 6 O -0.53 -23.61 13.13 -3.06 -0.04 -23.65 16 7 N -0.52 -22.26 2.71 -635.24 -1.72 -23.98 16 8 C 0.23 10.54 4.34 85.63 0.37 10.91 16 9 C -0.52 -26.70 6.60 25.60 0.17 -26.54 16 10 H 0.04 2.30 7.81 -2.91 -0.02 2.27 16 11 C 0.04 1.81 5.46 84.66 0.46 2.27 16 12 N -0.91 -47.78 13.29 21.45 0.28 -47.50 16 13 Si 0.94 42.08 29.54 68.60 2.03 44.11 16 14 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 15 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 17 C 0.15 6.01 6.51 38.09 0.25 6.25 16 18 C -0.14 -5.26 9.19 22.39 0.21 -5.06 16 19 C -0.09 -2.82 9.95 22.36 0.22 -2.60 16 20 C 0.02 0.66 6.50 22.57 0.15 0.81 16 21 C 0.06 2.26 6.49 22.55 0.15 2.40 16 22 C -0.19 -7.60 8.96 22.49 0.20 -7.40 16 23 O -0.32 -10.01 10.42 -82.61 -0.86 -10.87 16 24 C 0.01 0.21 7.26 72.14 0.52 0.73 16 25 C 0.02 0.28 7.26 72.14 0.52 0.80 16 26 O -0.32 -8.47 10.42 -83.58 -0.87 -9.34 16 27 H 0.10 2.92 6.39 -2.39 -0.02 2.91 16 28 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.10 2.56 8.05 -2.38 -0.02 2.54 16 30 H 0.05 2.43 4.83 -2.39 -0.01 2.42 16 31 H 0.05 2.32 5.98 -2.39 -0.01 2.31 16 32 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 33 H 0.14 5.52 6.10 -2.91 -0.02 5.50 16 34 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 35 H 0.17 7.56 4.51 -63.74 -0.29 7.27 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.16 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.16 1.38 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -64.49 327.02 5.49 -59.00 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.84 Total: 15.94 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 4.53 Total: 9.43 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -1.44 Total: -71.48 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -1.77 Total: -43.86 kcal Atomic # 9 Polarization: -14.42 SS G_CDS: 1.30 Total: -13.12 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -64.49 5.49 -59.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815373193.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.140 kcal (2) G-P(sol) polarization free energy of solvation -64.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds