Wall clock time and date at job start Tue Mar 31 2020 15:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99755 * 2 1 4 4 C 1.50703 * 109.47109 * 66.04401 * 3 2 1 5 5 H 1.08005 * 119.99876 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99989 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47454 * 59.99696 * 8 6 4 10 10 H 1.48506 * 109.47297 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46926 * 299.99488 * 8 6 4 12 12 C 1.39457 * 111.00306 * 236.04929 * 2 1 3 13 13 C 1.38791 * 120.14230 * 63.67533 * 12 2 1 14 14 C 1.38118 * 120.04168 * 179.72647 * 13 12 2 15 15 C 1.38408 * 120.31569 * 0.55150 * 14 13 12 16 16 C 1.50709 * 119.86032 * 179.74723 * 15 14 13 17 17 F 1.39897 * 109.46876 * 269.97850 * 16 15 14 18 18 F 1.39895 * 109.46965 * 29.97909 * 16 15 14 19 19 F 1.39902 * 109.47025 * 149.97489 * 16 15 14 20 20 C 1.38014 * 120.28110 * 359.72252 * 15 14 13 21 21 C 1.39251 * 119.95285 * 0.02562 * 20 15 14 22 22 C 1.48370 * 120.15910 * 179.97438 * 21 20 15 23 23 N 1.34075 * 126.67779 * 179.70912 * 22 21 20 24 24 N 1.28981 * 107.26501 * 179.89475 * 23 22 21 25 25 N 1.28731 * 108.95356 * 0.37210 * 24 23 22 26 26 H 0.97001 * 125.33901 * 179.75989 * 25 24 23 27 27 N 1.28873 * 109.32562 * 359.76513 * 25 24 23 28 28 H 1.08995 * 109.47046 * 60.00231 * 1 2 3 29 29 H 1.09008 * 109.46903 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47457 * 299.99830 * 1 2 3 31 31 H 1.08992 * 109.47459 * 186.04319 * 3 2 1 32 32 H 1.09004 * 109.47040 * 306.04470 * 3 2 1 33 33 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 34 34 H 1.08004 * 119.97396 * 359.97438 * 13 12 2 35 35 H 1.08000 * 119.84009 * 180.27695 * 14 13 12 36 36 H 1.08001 * 120.02959 * 179.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5113 2.0488 6 6 2.0266 3.3496 1.5285 7 7 2.7118 4.0020 0.6149 8 14 1.5827 4.1869 3.1382 9 1 2.1754 3.4298 4.2699 10 1 2.1147 5.5734 3.1382 11 1 0.1055 4.2230 3.2864 12 6 1.9689 -0.7271 -1.0800 13 6 1.7218 -0.3046 -2.3787 14 6 2.2226 -1.0232 -3.4467 15 6 2.9625 -2.1726 -3.2298 16 6 3.4993 -2.9519 -4.4028 17 9 2.5593 -3.9110 -4.7948 18 9 3.7474 -2.0795 -5.4680 19 9 4.6894 -3.5884 -4.0345 20 6 3.2114 -2.6078 -1.9440 21 6 2.7164 -1.8893 -0.8587 22 6 2.9808 -2.3533 0.5255 23 7 2.5746 -1.7637 1.6591 24 7 3.0083 -2.4803 2.6400 25 7 3.6689 -3.4792 2.1679 26 1 4.1014 -4.1668 2.6981 27 7 3.6656 -3.4226 0.8804 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.0796 1.3446 -0.1082 32 1 1.5610 1.9274 -0.8310 33 1 2.9863 4.9181 0.7769 34 1 1.1408 0.5888 -2.5542 35 1 2.0321 -0.6890 -4.4558 36 1 3.7890 -3.5055 -1.7795 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821597874.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:58 Heat of formation + Delta-G solvation = 18.873816 kcal Electronic energy + Delta-G solvation = -27780.332867 eV Core-core repulsion = 23274.379488 eV Total energy + Delta-G solvation = -4505.953379 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.17333 -47.68641 -47.63691 -44.04478 -39.80302 -36.38723 -34.05507 -33.38232 -32.63680 -30.67232 -30.50106 -27.32213 -26.31249 -24.78815 -24.20789 -23.92508 -22.48293 -21.40972 -20.36411 -19.11839 -18.50527 -18.35900 -18.02810 -16.75466 -16.56744 -15.87972 -15.40323 -15.17075 -14.75885 -14.52073 -14.39883 -14.10992 -13.95581 -13.81364 -13.79022 -13.72243 -13.50136 -13.32957 -12.86683 -12.59347 -12.05164 -11.97997 -11.66474 -11.55506 -11.23730 -10.96750 -10.94625 -10.74097 -10.72897 -10.61512 -10.55688 -10.01302 -9.32887 -8.88839 -8.54200 -8.44589 -7.49398 -6.03162 -4.03438 0.75542 1.05702 1.54945 2.51423 2.62321 2.65188 3.35571 3.39360 3.43340 3.62111 3.67900 3.90708 4.12437 4.38046 4.42400 4.55980 4.64133 4.89298 5.01937 5.32945 5.42676 5.47489 5.63456 5.80681 5.89786 5.95959 6.09613 6.11878 6.16845 6.43675 6.64632 6.67801 6.68913 7.16094 7.21437 7.80359 7.94611 8.09109 8.49525 8.60318 9.03460 9.60133 11.07867 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.004194 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.241262 B = 6674.110677 C = 8126.385056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.501 5.501 3 C 0.203 3.797 4 C -0.500 4.500 5 H 0.069 0.931 6 C 0.056 3.944 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.277 1.277 12 C 0.193 3.807 13 C -0.155 4.155 14 C -0.043 4.043 15 C -0.208 4.208 16 C 0.514 3.486 17 F -0.179 7.179 18 F -0.178 7.178 19 F -0.178 7.178 20 C -0.030 4.030 21 C -0.012 4.012 22 C 0.224 3.776 23 N -0.191 5.191 24 N -0.066 5.066 25 N -0.242 5.242 26 H 0.469 0.531 27 N -0.309 5.309 28 H 0.019 0.981 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.030 0.970 32 H -0.002 1.002 33 H 0.262 0.738 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.609 -15.902 -6.697 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.222 5.222 3 C 0.081 3.919 4 C -0.538 4.538 5 H 0.087 0.913 6 C -0.145 4.145 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.202 1.202 12 C 0.095 3.905 13 C -0.175 4.175 14 C -0.063 4.063 15 C -0.210 4.210 16 C 0.460 3.540 17 F -0.161 7.161 18 F -0.159 7.159 19 F -0.160 7.160 20 C -0.050 4.050 21 C -0.017 4.017 22 C -0.056 4.056 23 N -0.063 5.063 24 N -0.062 5.062 25 N -0.085 5.085 26 H 0.322 0.678 27 N -0.162 5.162 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.048 0.952 32 H 0.016 0.984 33 H 0.071 0.929 34 H 0.160 0.840 35 H 0.154 0.846 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.810 -15.898 -5.612 16.879 hybrid contribution 0.150 0.401 -0.234 0.488 sum 0.960 -15.497 -5.846 16.591 Atomic orbital electron populations 1.22220 0.86139 0.99769 1.01722 1.59901 1.07862 1.18474 1.35999 1.19825 0.95418 0.79280 0.97414 1.21053 1.34858 0.96525 1.01412 0.91331 1.24958 0.95301 0.97330 0.96952 1.69947 1.38393 1.11552 1.34147 0.86544 0.78697 0.78188 0.83893 1.20119 1.21511 1.20233 1.19385 0.90092 0.90575 0.90464 1.21864 1.02151 1.01256 0.92262 1.20914 0.93233 0.91935 1.00204 1.19654 1.08745 1.00268 0.92318 1.18212 0.75497 0.77593 0.82721 1.93213 1.65221 1.65629 1.91988 1.93183 1.94312 1.69285 1.59135 1.93186 1.48210 1.83113 1.91443 1.20724 0.95881 0.98709 0.89730 1.17087 1.02335 0.96079 0.86181 1.23227 0.97129 0.89733 0.95461 1.76730 1.16565 1.18529 0.94490 1.79114 1.07313 0.95827 1.23950 1.47707 1.36250 1.21333 1.03229 0.67842 1.74818 1.22929 1.22617 0.95810 0.96204 0.93531 0.89619 0.95232 0.98382 0.92886 0.84010 0.84640 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.87 9.08 60.07 0.55 1.42 16 2 N -0.50 -10.27 2.92 -180.10 -0.53 -10.79 16 3 C 0.20 5.03 4.31 -4.97 -0.02 5.00 16 4 C -0.50 -13.54 8.51 -34.44 -0.29 -13.83 16 5 H 0.07 1.86 7.10 -52.48 -0.37 1.48 16 6 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.19 3.43 4.67 -83.55 -0.39 3.04 16 13 C -0.16 -2.38 8.69 -39.42 -0.34 -2.73 16 14 C -0.04 -0.56 9.38 -39.56 -0.37 -0.94 16 15 C -0.21 -2.74 5.45 -104.64 -0.57 -3.31 16 16 C 0.51 6.23 3.36 36.01 0.12 6.35 16 17 F -0.18 -2.16 17.30 2.25 0.04 -2.12 16 18 F -0.18 -2.16 16.45 2.25 0.04 -2.12 16 19 F -0.18 -2.19 16.45 2.25 0.04 -2.16 16 20 C -0.03 -0.41 9.04 -39.29 -0.36 -0.77 16 21 C -0.01 -0.21 5.89 -104.71 -0.62 -0.82 16 22 C 0.22 3.87 7.90 -156.29 -1.23 2.64 16 23 N -0.19 -3.67 10.93 32.14 0.35 -3.32 16 24 N -0.07 -1.08 13.47 60.35 0.81 -0.26 16 25 N -0.24 -2.94 7.90 60.35 0.48 -2.47 16 26 H 0.47 3.16 8.96 -340.36 -3.05 0.11 16 27 N -0.31 -4.45 12.09 32.16 0.39 -4.06 16 28 H 0.02 0.33 7.46 -51.93 -0.39 -0.05 16 29 H 0.05 0.75 8.13 -51.92 -0.42 0.33 16 30 H 0.09 1.66 6.86 -51.93 -0.36 1.31 16 31 H 0.03 0.81 8.06 -51.93 -0.42 0.39 16 32 H 0.00 -0.04 7.49 -51.93 -0.39 -0.43 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.14 2.14 7.16 -52.48 -0.38 1.76 16 35 H 0.14 1.44 7.59 -52.49 -0.40 1.04 16 36 H 0.14 1.78 7.42 -52.49 -0.39 1.39 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -31.25 327.91 -7.05 -38.30 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -5.69 Total: -4.44 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -3.63 Total: -2.50 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 2.24 Total: -46.35 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 0.11 Total: -6.39 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.25 -7.05 -38.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821597874.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.172 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds