Wall clock time and date at job start Tue Mar 31 2020 15:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99755 * 2 1 4 4 C 1.50703 * 109.47109 * 66.04401 * 3 2 1 5 5 H 1.08005 * 119.99876 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99989 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47454 * 59.99696 * 8 6 4 10 10 H 1.48506 * 109.47297 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46926 * 299.99488 * 8 6 4 12 12 C 1.39457 * 111.00306 * 236.04929 * 2 1 3 13 13 C 1.38791 * 120.14230 * 63.67533 * 12 2 1 14 14 C 1.38118 * 120.04168 * 179.72647 * 13 12 2 15 15 C 1.38408 * 120.31569 * 0.55150 * 14 13 12 16 16 C 1.50709 * 119.86032 * 179.74723 * 15 14 13 17 17 F 1.39897 * 109.46876 * 269.97850 * 16 15 14 18 18 F 1.39895 * 109.46965 * 29.97909 * 16 15 14 19 19 F 1.39902 * 109.47025 * 149.97489 * 16 15 14 20 20 C 1.38014 * 120.28110 * 359.72252 * 15 14 13 21 21 C 1.39251 * 119.95285 * 0.02562 * 20 15 14 22 22 C 1.48370 * 120.15910 * 179.97438 * 21 20 15 23 23 N 1.34075 * 126.67779 * 179.70912 * 22 21 20 24 24 N 1.28981 * 107.26501 * 179.89475 * 23 22 21 25 25 N 1.28731 * 108.95356 * 0.37210 * 24 23 22 26 26 H 0.97001 * 125.33901 * 179.75989 * 25 24 23 27 27 N 1.28873 * 109.32562 * 359.76513 * 25 24 23 28 28 H 1.08995 * 109.47046 * 60.00231 * 1 2 3 29 29 H 1.09008 * 109.46903 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47457 * 299.99830 * 1 2 3 31 31 H 1.08992 * 109.47459 * 186.04319 * 3 2 1 32 32 H 1.09004 * 109.47040 * 306.04470 * 3 2 1 33 33 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 34 34 H 1.08004 * 119.97396 * 359.97438 * 13 12 2 35 35 H 1.08000 * 119.84009 * 180.27695 * 14 13 12 36 36 H 1.08001 * 120.02959 * 179.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5113 2.0488 6 6 2.0266 3.3496 1.5285 7 7 2.7118 4.0020 0.6149 8 14 1.5827 4.1869 3.1382 9 1 2.1754 3.4298 4.2699 10 1 2.1147 5.5734 3.1382 11 1 0.1055 4.2230 3.2864 12 6 1.9689 -0.7271 -1.0800 13 6 1.7218 -0.3046 -2.3787 14 6 2.2226 -1.0232 -3.4467 15 6 2.9625 -2.1726 -3.2298 16 6 3.4993 -2.9519 -4.4028 17 9 2.5593 -3.9110 -4.7948 18 9 3.7474 -2.0795 -5.4680 19 9 4.6894 -3.5884 -4.0345 20 6 3.2114 -2.6078 -1.9440 21 6 2.7164 -1.8893 -0.8587 22 6 2.9808 -2.3533 0.5255 23 7 2.5746 -1.7637 1.6591 24 7 3.0083 -2.4803 2.6400 25 7 3.6689 -3.4792 2.1679 26 1 4.1014 -4.1668 2.6981 27 7 3.6656 -3.4226 0.8804 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.0796 1.3446 -0.1082 32 1 1.5610 1.9274 -0.8310 33 1 2.9863 4.9181 0.7769 34 1 1.1408 0.5888 -2.5542 35 1 2.0321 -0.6890 -4.4558 36 1 3.7890 -3.5055 -1.7795 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821597874.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:57 Heat of formation + Delta-G solvation = -0.403773 kcal Electronic energy + Delta-G solvation = -27781.168806 eV Core-core repulsion = 23274.379488 eV Total energy + Delta-G solvation = -4506.789318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.14590 -48.65758 -48.60069 -45.26019 -41.06986 -37.85271 -35.29530 -34.68320 -34.57179 -31.96961 -31.69985 -29.22474 -27.59651 -26.14300 -25.49333 -25.25169 -23.98586 -22.69821 -21.75091 -20.25181 -19.47091 -19.35284 -19.10613 -18.50052 -17.95838 -17.40374 -16.61020 -16.58802 -16.42258 -15.57597 -15.45599 -15.38653 -15.13522 -15.01480 -14.89846 -14.75826 -14.73651 -14.58951 -14.35842 -13.97306 -13.80026 -13.18392 -13.15317 -12.82738 -12.77414 -12.70381 -12.44543 -12.31975 -12.18147 -11.97305 -11.92895 -11.86236 -11.34002 -10.56420 -10.10085 -9.76971 -9.09454 -8.15380 -6.22449 -0.43899 -0.10870 0.34035 1.36297 1.44091 1.47096 1.54268 1.54476 1.64336 2.39941 2.46045 2.62972 2.78335 3.05236 3.10733 3.19007 3.40183 3.43708 3.78629 3.91102 4.18281 4.28414 4.36331 4.54682 4.63606 4.69506 4.75806 4.84897 4.99161 5.08081 5.12091 5.27648 5.32420 5.52124 5.74223 5.77214 6.12094 6.22647 6.74901 6.91230 7.36627 7.45632 8.95450 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.004194 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.241262 B = 6674.110677 C = 8126.385056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.505 5.505 3 C 0.225 3.775 4 C -0.509 4.509 5 H 0.064 0.936 6 C 0.005 3.995 7 N -0.935 5.935 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.265 1.265 12 C 0.161 3.839 13 C -0.159 4.159 14 C -0.031 4.031 15 C -0.201 4.201 16 C 0.523 3.477 17 F -0.175 7.175 18 F -0.175 7.175 19 F -0.177 7.177 20 C -0.022 4.022 21 C -0.024 4.024 22 C 0.208 3.792 23 N -0.240 5.240 24 N -0.078 5.078 25 N -0.206 5.206 26 H 0.491 0.509 27 N -0.294 5.294 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.067 0.933 31 H -0.007 1.007 32 H -0.018 1.018 33 H 0.263 0.737 34 H 0.140 0.860 35 H 0.165 0.835 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.690 -17.419 -7.213 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.226 5.226 3 C 0.101 3.899 4 C -0.548 4.548 5 H 0.082 0.918 6 C -0.193 4.193 7 N -0.575 5.575 8 Si 0.787 3.213 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.190 1.190 12 C 0.063 3.937 13 C -0.179 4.179 14 C -0.050 4.050 15 C -0.203 4.203 16 C 0.469 3.531 17 F -0.157 7.157 18 F -0.156 7.156 19 F -0.158 7.158 20 C -0.042 4.042 21 C -0.028 4.028 22 C -0.072 4.072 23 N -0.111 5.111 24 N -0.074 5.074 25 N -0.055 5.055 26 H 0.350 0.650 27 N -0.148 5.148 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.011 0.989 32 H -0.001 1.001 33 H 0.071 0.929 34 H 0.158 0.842 35 H 0.183 0.817 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.882 -17.450 -6.114 18.511 hybrid contribution 0.195 0.698 -0.126 0.735 sum 1.077 -16.752 -6.240 17.909 Atomic orbital electron populations 1.22179 0.85133 1.00896 1.01198 1.59631 1.08883 1.15902 1.38222 1.19336 0.93050 0.81702 0.95798 1.21342 1.34389 0.96863 1.02160 0.91809 1.25773 0.95224 0.98073 1.00188 1.70066 1.39589 1.11850 1.36045 0.85546 0.78972 0.77041 0.79712 1.20051 1.21082 1.18972 1.19457 0.92086 0.91558 0.90567 1.21828 1.02542 1.01533 0.91995 1.21153 0.91829 0.91186 1.00832 1.19814 1.07850 1.00073 0.92538 1.17937 0.75450 0.77460 0.82238 1.93228 1.65117 1.65432 1.91887 1.93196 1.94289 1.69245 1.58900 1.93195 1.48149 1.83050 1.91441 1.20855 0.95285 0.98778 0.89314 1.17198 1.02597 0.96235 0.86777 1.23403 0.97865 0.90378 0.95509 1.76693 1.18527 1.20271 0.95584 1.79024 1.08123 0.96643 1.23570 1.47758 1.34274 1.20629 1.02888 0.65043 1.74780 1.22106 1.21520 0.96408 0.95303 0.91486 0.91435 0.98864 1.00057 0.92862 0.84242 0.81727 0.82252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.93 9.08 127.69 1.16 3.09 16 2 N -0.51 -21.31 2.92 -723.70 -2.12 -23.42 16 3 C 0.23 11.61 4.31 85.56 0.37 11.98 16 4 C -0.51 -28.38 8.51 25.60 0.22 -28.16 16 5 H 0.06 3.55 7.10 -2.91 -0.02 3.53 16 6 C 0.01 0.29 5.46 84.65 0.46 0.75 16 7 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 8 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 10 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 11 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 12 C 0.16 5.77 4.67 38.47 0.18 5.95 16 13 C -0.16 -4.83 8.69 22.37 0.19 -4.63 16 14 C -0.03 -0.74 9.38 22.28 0.21 -0.53 16 15 C -0.20 -4.83 5.45 -19.87 -0.11 -4.93 16 16 C 0.52 11.20 3.36 71.24 0.24 11.44 16 17 F -0.18 -3.70 17.30 44.97 0.78 -2.93 16 18 F -0.18 -3.73 16.45 44.97 0.74 -2.99 16 19 F -0.18 -3.87 16.45 44.97 0.74 -3.13 16 20 C -0.02 -0.57 9.04 22.46 0.20 -0.37 16 21 C -0.02 -0.78 5.89 -19.92 -0.12 -0.90 16 22 C 0.21 7.11 7.90 137.33 1.08 8.19 16 23 N -0.24 -9.31 10.93 -52.22 -0.57 -9.88 16 24 N -0.08 -2.50 13.47 37.02 0.50 -2.00 16 25 N -0.21 -4.70 7.90 37.02 0.29 -4.40 16 26 H 0.49 5.51 8.96 -347.53 -3.12 2.40 16 27 N -0.29 -8.03 12.09 -52.17 -0.63 -8.66 16 28 H 0.03 0.99 7.46 -2.39 -0.02 0.97 16 29 H 0.07 2.17 8.13 -2.38 -0.02 2.15 16 30 H 0.07 2.70 6.86 -2.39 -0.02 2.68 16 31 H -0.01 -0.39 8.06 -2.39 -0.02 -0.41 16 32 H -0.02 -0.97 7.49 -2.38 -0.02 -0.99 16 33 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 34 H 0.14 4.24 7.16 -2.91 -0.02 4.22 16 35 H 0.17 3.00 7.59 -2.91 -0.02 2.98 16 36 H 0.16 3.58 7.42 -2.91 -0.02 3.56 16 Total: -1.00 -68.43 327.91 4.19 -64.23 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -1.94 Total: 0.06 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 4.09 Total: 1.89 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -2.24 Total: -103.66 kcal Atomic # 9 Polarization: -11.30 SS G_CDS: 2.26 Total: -9.05 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -68.43 4.19 -64.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821597874.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.829 kcal (2) G-P(sol) polarization free energy of solvation -68.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds