Wall clock time and date at job start Tue Mar 31 2020 15:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00086 * 2 1 4 4 C 1.53000 * 109.47331 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46984 * 64.99913 * 4 3 2 6 6 C 1.37102 * 119.99582 * 269.99987 * 5 4 3 7 7 H 1.07995 * 120.00152 * 11.07633 * 6 5 4 8 8 C 1.38959 * 119.99506 * 191.07618 * 6 5 4 9 9 N 1.31403 * 120.00016 * 13.32057 * 8 6 5 10 10 Si 1.86799 * 119.99633 * 193.32247 * 8 6 5 11 11 H 1.48499 * 109.47268 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47153 * 119.99956 * 10 8 6 13 13 H 1.48503 * 109.46912 * 240.00036 * 10 8 6 14 14 C 1.34778 * 120.00315 * 90.00014 * 5 4 3 15 15 O 1.21294 * 119.99851 * 241.52846 * 14 5 4 16 16 C 1.50700 * 119.99746 * 61.52314 * 14 5 4 17 17 H 1.08992 * 109.47287 * 318.42264 * 16 14 5 18 18 C 1.53003 * 109.46671 * 78.42204 * 16 14 5 19 19 S 1.81397 * 109.46944 * 198.41830 * 16 14 5 20 20 C 1.76196 * 102.99982 * 67.12699 * 19 16 14 21 21 C 1.38944 * 120.05692 * 187.33564 * 20 19 16 22 22 C 1.38103 * 119.94589 * 179.97438 * 21 20 19 23 23 C 1.38482 * 120.05361 * 0.02562 * 22 21 20 24 24 F 1.35098 * 119.94124 * 179.97438 * 23 22 21 25 25 C 1.38478 * 120.11262 * 0.24769 * 23 22 21 26 26 C 1.38108 * 120.05227 * 359.49600 * 25 23 22 27 27 H 1.09000 * 109.46883 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46867 * 300.00117 * 1 2 3 29 29 H 1.08991 * 109.47521 * 60.00072 * 1 2 3 30 30 H 1.08998 * 109.47247 * 60.00008 * 3 2 1 31 31 H 1.09004 * 109.46510 * 300.00235 * 3 2 1 32 32 H 1.09000 * 109.46730 * 304.99960 * 4 3 2 33 33 H 1.09001 * 109.46988 * 184.99155 * 4 3 2 34 34 H 0.96998 * 120.00185 * 185.01640 * 9 8 6 35 35 H 1.08997 * 109.47391 * 60.12678 * 18 16 14 36 36 H 1.09007 * 109.46627 * 180.12027 * 18 16 14 37 37 H 1.09001 * 109.47213 * 300.12017 * 18 16 14 38 38 H 1.07997 * 120.02232 * 359.97438 * 21 20 19 39 39 H 1.07992 * 119.97151 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.97666 * 179.72570 * 25 23 22 41 41 H 1.07995 * 120.02642 * 180.24904 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0969 -0.7986 -1.3369 7 1 3.7021 -1.4254 -0.5510 8 6 4.7277 -1.3736 -2.4335 9 7 5.4329 -0.6261 -3.2524 10 14 4.5730 -3.2092 -2.7434 11 1 3.7318 -3.8210 -1.6836 12 1 3.9429 -3.4360 -4.0688 13 1 5.9220 -3.8298 -2.7239 14 6 4.2615 1.3337 -2.3219 15 8 3.6242 1.2091 -3.3464 16 6 5.3727 2.3487 -2.2443 17 1 5.3358 2.8549 -1.2798 18 6 6.7208 1.6416 -2.3980 19 16 5.1734 3.5662 -3.5742 20 6 3.6956 4.4113 -3.1198 21 6 3.1258 5.3332 -3.9891 22 6 1.9672 5.9939 -3.6308 23 6 1.3737 5.7386 -2.4059 24 9 0.2406 6.3866 -2.0575 25 6 1.9428 4.8244 -1.5353 26 6 3.0985 4.1572 -1.8912 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6887 1.8464 0.8900 31 1 1.6885 1.8463 -0.8900 32 1 3.8514 0.5683 0.8409 33 1 3.9785 2.1766 0.0888 34 1 5.8126 -1.0128 -4.0568 35 1 6.7586 1.1373 -3.3635 36 1 7.5247 2.3756 -2.3398 37 1 6.8396 0.9085 -1.6002 38 1 3.5885 5.5329 -4.9443 39 1 1.5241 6.7108 -4.3060 40 1 1.4806 4.6302 -0.5787 41 1 3.5397 3.4413 -1.2136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822283156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:25 Heat of formation + Delta-G solvation = -65.183756 kcal Electronic energy + Delta-G solvation = -26933.148158 eV Core-core repulsion = 23048.637748 eV Total energy + Delta-G solvation = -3884.510410 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.77379 -38.97501 -38.42640 -37.16449 -34.33727 -32.24756 -31.89579 -30.98400 -30.34204 -28.81903 -25.95088 -24.91810 -23.79109 -22.73473 -22.60837 -21.97549 -19.24841 -17.87460 -17.09134 -16.91024 -16.14207 -16.09290 -15.74039 -15.47166 -15.23802 -14.92353 -14.76872 -14.43543 -14.10941 -13.80218 -13.66050 -13.48020 -13.20063 -12.68559 -12.56536 -12.32782 -12.04149 -11.80886 -11.41641 -11.33612 -11.08715 -10.99891 -10.96744 -10.79542 -10.68477 -10.63079 -10.34604 -10.04125 -9.76943 -9.27423 -9.19998 -9.05684 -9.03278 -8.38040 -7.37392 -6.87450 -6.08351 -3.51699 1.16231 1.30744 1.95318 2.81543 3.31474 3.42147 3.44210 3.62963 3.79386 4.26180 4.33818 4.36857 4.75976 4.84576 4.90383 5.22820 5.29855 5.42266 5.46002 5.50459 5.63471 5.64781 5.77173 5.78469 5.81410 5.87639 5.89184 5.94219 6.00814 6.17961 6.19174 6.24889 6.33532 6.43768 6.54180 6.71238 6.91220 7.31078 7.67205 7.68839 8.11581 9.05757 9.28519 9.57875 10.00059 11.02557 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012449 B = 0.005538 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.559942 B = 5054.388897 C = 6549.754037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.363 6.363 3 C 0.043 3.957 4 C 0.131 3.869 5 N -0.541 5.541 6 C -0.266 4.266 7 H 0.090 0.910 8 C 0.015 3.985 9 N -0.884 5.884 10 Si 0.917 3.083 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.289 1.289 14 C 0.576 3.424 15 O -0.487 6.487 16 C -0.095 4.095 17 H 0.082 0.918 18 C -0.097 4.097 19 S -0.075 6.075 20 C -0.075 4.075 21 C -0.080 4.080 22 C -0.134 4.134 23 C 0.076 3.924 24 F -0.145 7.145 25 C -0.130 4.130 26 C -0.109 4.109 27 H 0.079 0.921 28 H 0.030 0.970 29 H 0.035 0.965 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.266 0.734 35 H 0.094 0.906 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.931 10.739 4.796 12.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C -0.036 4.036 4 C 0.005 3.995 5 N -0.269 5.269 6 C -0.393 4.393 7 H 0.108 0.892 8 C -0.185 4.185 9 N -0.528 5.528 10 Si 0.746 3.254 11 H -0.200 1.200 12 H -0.214 1.214 13 H -0.216 1.216 14 C 0.361 3.639 15 O -0.358 6.358 16 C -0.228 4.228 17 H 0.100 0.900 18 C -0.156 4.156 19 S 0.173 5.827 20 C -0.189 4.189 21 C -0.104 4.104 22 C -0.155 4.155 23 C 0.053 3.947 24 F -0.124 7.124 25 C -0.151 4.151 26 C -0.133 4.133 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.185 10.533 3.127 11.203 hybrid contribution -1.390 -0.837 1.006 1.909 sum -3.576 9.697 4.132 11.131 Atomic orbital electron populations 1.22656 0.82794 1.02068 0.98950 1.88075 1.17974 1.27032 1.95035 1.23266 0.96370 0.85257 0.98708 1.21117 0.91077 0.97233 0.90066 1.42587 1.70994 1.05502 1.07865 1.19385 1.32146 0.79930 1.07862 0.89212 1.24894 0.96350 0.99226 0.98037 1.69340 1.33784 1.36225 1.13486 0.86005 0.77274 0.83903 0.78203 1.20001 1.21355 1.21579 1.18803 0.82019 0.79507 0.83551 1.90476 1.48332 1.63982 1.32969 1.24219 1.03798 0.97148 0.97658 0.90027 1.21412 0.89252 0.98253 1.06685 1.85138 1.23191 1.35948 1.38455 1.21984 1.00514 0.99665 0.96728 1.20594 0.94932 0.95887 0.99011 1.20979 0.96820 1.01975 0.95697 1.17576 0.85214 0.96487 0.95406 1.91463 1.48538 1.80023 1.92383 1.20953 0.96863 0.97169 1.00075 1.21149 0.96142 0.99988 0.96024 0.90196 0.95123 0.94658 0.94220 0.93803 0.90676 0.92206 0.92230 0.88765 0.94537 0.90231 0.84667 0.84662 0.84908 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.08 10.18 -35.23 -0.36 -7.44 16 3 C 0.04 0.75 6.27 37.16 0.23 0.98 16 4 C 0.13 2.41 5.50 -4.04 -0.02 2.38 16 5 N -0.54 -12.62 2.55 -114.81 -0.29 -12.91 16 6 C -0.27 -6.92 9.21 -14.93 -0.14 -7.06 16 7 H 0.09 2.33 7.87 -52.49 -0.41 1.92 16 8 C 0.02 0.41 5.14 -17.47 -0.09 0.32 16 9 N -0.88 -23.90 7.63 55.50 0.42 -23.47 16 10 Si 0.92 21.65 29.58 -169.99 -5.03 16.62 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.58 13.64 2.26 -10.98 -0.02 13.62 16 15 O -0.49 -13.58 15.62 5.55 0.09 -13.50 16 16 C -0.09 -1.89 2.40 -27.88 -0.07 -1.96 16 17 H 0.08 1.43 5.93 -51.93 -0.31 1.13 16 18 C -0.10 -1.93 8.03 37.16 0.30 -1.63 16 19 S -0.08 -1.40 20.56 -107.50 -2.21 -3.61 16 20 C -0.08 -1.29 6.00 -39.06 -0.23 -1.53 16 21 C -0.08 -1.18 9.79 -39.37 -0.39 -1.57 16 22 C -0.13 -1.81 10.02 -39.54 -0.40 -2.21 16 23 C 0.08 1.09 7.30 -39.40 -0.29 0.80 16 24 F -0.15 -2.05 17.26 2.25 0.04 -2.01 16 25 C -0.13 -1.90 10.02 -39.54 -0.40 -2.29 16 26 C -0.11 -1.79 8.73 -39.37 -0.34 -2.13 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 32 H 0.07 1.33 8.04 -51.93 -0.42 0.91 16 33 H 0.06 0.93 5.36 -51.93 -0.28 0.65 16 34 H 0.27 7.14 8.32 -40.82 -0.34 6.80 16 35 H 0.09 2.12 6.58 -51.93 -0.34 1.78 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 1.68 8.12 -51.93 -0.42 1.26 16 38 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 39 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.13 2.15 3.03 -52.49 -0.16 1.99 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -31.11 352.57 -8.04 -39.15 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.28 Total: 2.52 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -0.74 Total: -0.67 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.13 Total: -36.39 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.27 Total: -20.93 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.21 Total: -3.61 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.11 -8.04 -39.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822283156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.029 kcal (2) G-P(sol) polarization free energy of solvation -31.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds