Wall clock time and date at job start Tue Mar 31 2020 15:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00086 * 2 1 4 4 C 1.53000 * 109.47331 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46984 * 64.99913 * 4 3 2 6 6 C 1.37102 * 119.99582 * 269.99987 * 5 4 3 7 7 H 1.07995 * 120.00152 * 11.07633 * 6 5 4 8 8 C 1.38959 * 119.99506 * 191.07618 * 6 5 4 9 9 N 1.31403 * 120.00016 * 13.32057 * 8 6 5 10 10 Si 1.86799 * 119.99633 * 193.32247 * 8 6 5 11 11 H 1.48499 * 109.47268 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47153 * 119.99956 * 10 8 6 13 13 H 1.48503 * 109.46912 * 240.00036 * 10 8 6 14 14 C 1.34778 * 120.00315 * 90.00014 * 5 4 3 15 15 O 1.21294 * 119.99851 * 241.52846 * 14 5 4 16 16 C 1.50700 * 119.99746 * 61.52314 * 14 5 4 17 17 H 1.08992 * 109.47287 * 318.42264 * 16 14 5 18 18 C 1.53003 * 109.46671 * 78.42204 * 16 14 5 19 19 S 1.81397 * 109.46944 * 198.41830 * 16 14 5 20 20 C 1.76196 * 102.99982 * 67.12699 * 19 16 14 21 21 C 1.38944 * 120.05692 * 187.33564 * 20 19 16 22 22 C 1.38103 * 119.94589 * 179.97438 * 21 20 19 23 23 C 1.38482 * 120.05361 * 0.02562 * 22 21 20 24 24 F 1.35098 * 119.94124 * 179.97438 * 23 22 21 25 25 C 1.38478 * 120.11262 * 0.24769 * 23 22 21 26 26 C 1.38108 * 120.05227 * 359.49600 * 25 23 22 27 27 H 1.09000 * 109.46883 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46867 * 300.00117 * 1 2 3 29 29 H 1.08991 * 109.47521 * 60.00072 * 1 2 3 30 30 H 1.08998 * 109.47247 * 60.00008 * 3 2 1 31 31 H 1.09004 * 109.46510 * 300.00235 * 3 2 1 32 32 H 1.09000 * 109.46730 * 304.99960 * 4 3 2 33 33 H 1.09001 * 109.46988 * 184.99155 * 4 3 2 34 34 H 0.96998 * 120.00185 * 185.01640 * 9 8 6 35 35 H 1.08997 * 109.47391 * 60.12678 * 18 16 14 36 36 H 1.09007 * 109.46627 * 180.12027 * 18 16 14 37 37 H 1.09001 * 109.47213 * 300.12017 * 18 16 14 38 38 H 1.07997 * 120.02232 * 359.97438 * 21 20 19 39 39 H 1.07992 * 119.97151 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.97666 * 179.72570 * 25 23 22 41 41 H 1.07995 * 120.02642 * 180.24904 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0969 -0.7986 -1.3369 7 1 3.7021 -1.4254 -0.5510 8 6 4.7277 -1.3736 -2.4335 9 7 5.4329 -0.6261 -3.2524 10 14 4.5730 -3.2092 -2.7434 11 1 3.7318 -3.8210 -1.6836 12 1 3.9429 -3.4360 -4.0688 13 1 5.9220 -3.8298 -2.7239 14 6 4.2615 1.3337 -2.3219 15 8 3.6242 1.2091 -3.3464 16 6 5.3727 2.3487 -2.2443 17 1 5.3358 2.8549 -1.2798 18 6 6.7208 1.6416 -2.3980 19 16 5.1734 3.5662 -3.5742 20 6 3.6956 4.4113 -3.1198 21 6 3.1258 5.3332 -3.9891 22 6 1.9672 5.9939 -3.6308 23 6 1.3737 5.7386 -2.4059 24 9 0.2406 6.3866 -2.0575 25 6 1.9428 4.8244 -1.5353 26 6 3.0985 4.1572 -1.8912 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6887 1.8464 0.8900 31 1 1.6885 1.8463 -0.8900 32 1 3.8514 0.5683 0.8409 33 1 3.9785 2.1766 0.0888 34 1 5.8126 -1.0128 -4.0568 35 1 6.7586 1.1373 -3.3635 36 1 7.5247 2.3756 -2.3398 37 1 6.8396 0.9085 -1.6002 38 1 3.5885 5.5329 -4.9443 39 1 1.5241 6.7108 -4.3060 40 1 1.4806 4.6302 -0.5787 41 1 3.5397 3.4413 -1.2136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822283156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:24 Heat of formation + Delta-G solvation = -82.637386 kcal Electronic energy + Delta-G solvation = -26933.905004 eV Core-core repulsion = 23048.637748 eV Total energy + Delta-G solvation = -3885.267256 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.89111 -40.62162 -39.69206 -38.60525 -36.14452 -33.97892 -33.63004 -32.17494 -31.51778 -30.37441 -27.34178 -26.64926 -25.38039 -24.05005 -23.82709 -23.37617 -21.00463 -19.15026 -18.74199 -18.19537 -17.63711 -17.33057 -17.22023 -16.76196 -16.61510 -16.54110 -16.38535 -15.74331 -15.54607 -15.43219 -15.37659 -14.65047 -14.36489 -14.05839 -13.85684 -13.68377 -13.56332 -13.31399 -13.15656 -12.79800 -12.76300 -12.68446 -12.61125 -12.29718 -12.20932 -12.08390 -12.06760 -11.84881 -11.24299 -10.96832 -10.53924 -10.49035 -10.24718 -10.17742 -9.21952 -8.27171 -8.07661 -5.50944 -0.03045 0.17444 0.55596 1.38250 1.41917 1.48057 1.55913 1.98268 2.46298 2.48041 2.96595 3.14217 3.22765 3.32786 3.63572 3.82281 3.95448 4.04663 4.16173 4.24239 4.29778 4.35066 4.43714 4.46655 4.56016 4.58810 4.64050 4.66869 4.82240 4.83659 4.94337 5.03048 5.04734 5.07360 5.09613 5.18606 5.57896 5.71657 5.79456 6.15751 6.39884 7.09865 7.43231 7.75197 8.10764 9.00181 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012449 B = 0.005538 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.559942 B = 5054.388897 C = 6549.754037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.401 6.401 3 C 0.047 3.953 4 C 0.123 3.877 5 N -0.556 5.556 6 C -0.268 4.268 7 H 0.085 0.915 8 C -0.034 4.034 9 N -0.898 5.898 10 Si 0.968 3.032 11 H -0.269 1.269 12 H -0.303 1.303 13 H -0.282 1.282 14 C 0.582 3.418 15 O -0.541 6.541 16 C -0.091 4.091 17 H 0.107 0.893 18 C -0.086 4.086 19 S -0.089 6.089 20 C -0.098 4.098 21 C -0.083 4.083 22 C -0.127 4.127 23 C 0.074 3.926 24 F -0.142 7.142 25 C -0.131 4.131 26 C -0.120 4.120 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.027 0.973 30 H 0.083 0.917 31 H 0.025 0.975 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.257 0.743 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.151 0.849 39 H 0.167 0.833 40 H 0.155 0.845 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.859 12.353 6.106 14.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.320 6.320 3 C -0.032 4.032 4 C -0.001 4.001 5 N -0.285 5.285 6 C -0.396 4.396 7 H 0.103 0.897 8 C -0.231 4.231 9 N -0.543 5.543 10 Si 0.796 3.204 11 H -0.193 1.193 12 H -0.231 1.231 13 H -0.209 1.209 14 C 0.371 3.629 15 O -0.415 6.415 16 C -0.224 4.224 17 H 0.125 0.875 18 C -0.145 4.145 19 S 0.158 5.842 20 C -0.212 4.212 21 C -0.107 4.107 22 C -0.147 4.147 23 C 0.052 3.948 24 F -0.120 7.120 25 C -0.151 4.151 26 C -0.144 4.144 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.043 0.957 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.169 0.831 39 H 0.185 0.815 40 H 0.173 0.827 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.124 12.166 4.492 13.340 hybrid contribution -1.252 -1.251 0.634 1.880 sum -4.376 10.915 5.126 12.828 Atomic orbital electron populations 1.22820 0.80820 1.03076 1.00051 1.88012 1.20313 1.28356 1.95305 1.23236 0.95352 0.84826 0.99744 1.21438 0.92050 0.98509 0.88092 1.42775 1.71255 1.04917 1.09553 1.19486 1.31150 0.81501 1.07492 0.89722 1.25550 0.96953 1.02157 0.98489 1.69477 1.34513 1.36892 1.13418 0.85216 0.77292 0.80815 0.77070 1.19319 1.23107 1.20866 1.19325 0.81611 0.79352 0.82651 1.90444 1.50141 1.66122 1.34776 1.24022 1.01910 0.96898 0.99573 0.87526 1.21238 0.90479 0.98535 1.04254 1.85036 1.24951 1.35483 1.38778 1.22100 1.00437 1.00766 0.97877 1.20847 0.95258 0.95282 0.99306 1.21296 0.95906 1.01707 0.95777 1.17732 0.85196 0.96236 0.95676 1.91478 1.48315 1.79879 1.92377 1.21163 0.96169 0.96654 1.01110 1.21167 0.96973 1.00423 0.95885 0.89409 0.92036 0.95382 0.89946 0.95705 0.90036 0.89312 0.93180 0.91761 0.91167 0.91884 0.83112 0.81526 0.82692 0.85770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -15.17 10.18 -148.98 -1.52 -16.69 16 3 C 0.05 1.54 6.27 71.98 0.45 1.99 16 4 C 0.12 4.36 5.50 86.38 0.48 4.83 16 5 N -0.56 -25.95 2.55 -635.52 -1.62 -27.58 16 6 C -0.27 -14.10 9.21 84.04 0.77 -13.32 16 7 H 0.08 4.43 7.87 -2.91 -0.02 4.41 16 8 C -0.03 -1.83 5.14 84.93 0.44 -1.39 16 9 N -0.90 -49.91 7.63 21.67 0.17 -49.75 16 10 Si 0.97 45.38 29.58 68.60 2.03 47.41 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 C 0.58 27.81 2.26 87.66 0.20 28.01 16 15 O -0.54 -30.88 15.62 -3.07 -0.05 -30.93 16 16 C -0.09 -3.60 2.40 29.85 0.07 -3.53 16 17 H 0.11 3.61 5.93 -2.39 -0.01 3.59 16 18 C -0.09 -3.43 8.03 71.98 0.58 -2.85 16 19 S -0.09 -3.30 20.56 -56.49 -1.16 -4.46 16 20 C -0.10 -3.28 6.00 22.61 0.14 -3.14 16 21 C -0.08 -2.31 9.79 22.41 0.22 -2.09 16 22 C -0.13 -3.06 10.02 22.30 0.22 -2.84 16 23 C 0.07 1.92 7.30 22.39 0.16 2.09 16 24 F -0.14 -3.57 17.26 44.97 0.78 -2.80 16 25 C -0.13 -3.51 10.02 22.30 0.22 -3.28 16 26 C -0.12 -3.78 8.73 22.41 0.20 -3.59 16 27 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.02 0.91 8.08 -2.39 -0.02 0.89 16 32 H 0.08 2.76 8.04 -2.39 -0.02 2.74 16 33 H 0.09 2.57 5.36 -2.39 -0.01 2.55 16 34 H 0.26 14.32 8.32 -92.71 -0.77 13.55 16 35 H 0.06 2.96 6.58 -2.39 -0.02 2.94 16 36 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 37 H 0.06 2.68 8.12 -2.39 -0.02 2.66 16 38 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 39 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 40 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 41 H 0.12 3.95 3.03 -2.91 -0.01 3.94 16 Total: -1.00 -68.89 352.57 5.07 -63.83 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 1.05 Total: 18.01 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 5.39 Total: 2.96 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -1.46 Total: -77.33 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -1.56 Total: -47.62 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.78 Total: -2.80 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -1.16 Total: -4.46 kcal Total: -68.89 5.07 -63.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822283156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.812 kcal (2) G-P(sol) polarization free energy of solvation -68.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds