Wall clock time and date at job start Tue Mar 31 2020 14:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47340 * 2 1 4 4 C 1.50700 * 109.47051 * 120.00215 * 2 1 3 5 5 H 1.08001 * 120.00329 * 114.77890 * 4 2 1 6 6 C 1.37876 * 119.99812 * 295.04619 * 4 2 1 7 7 N 1.31513 * 120.00016 * 199.85349 * 6 4 2 8 8 Si 1.86800 * 120.00134 * 19.85927 * 6 4 2 9 9 H 1.48506 * 109.47324 * 84.62146 * 8 6 4 10 10 H 1.48497 * 109.47195 * 204.62565 * 8 6 4 11 11 H 1.48505 * 109.46913 * 324.62515 * 8 6 4 12 12 C 1.53004 * 109.47619 * 239.99995 * 2 1 3 13 13 S 1.81398 * 109.46713 * 59.99667 * 12 2 1 14 14 O 1.42101 * 110.55083 * 291.63012 * 13 12 2 15 15 O 1.42107 * 110.54260 * 68.38065 * 13 12 2 16 16 N 1.65604 * 104.45048 * 180.02562 * 13 12 2 17 17 C 1.47154 * 120.98514 * 269.72392 * 16 13 12 18 18 C 1.53714 * 108.16163 * 129.42822 * 17 16 13 19 19 O 1.42959 * 109.14524 * 52.53993 * 18 17 16 20 20 C 1.42962 * 114.16560 * 297.28426 * 19 18 17 21 21 H 1.09000 * 109.55364 * 302.63287 * 20 19 18 22 22 C 1.53003 * 109.51195 * 182.50730 * 20 19 18 23 23 F 1.39902 * 109.47204 * 180.25317 * 22 20 19 24 24 F 1.39899 * 109.47256 * 300.25922 * 22 20 19 25 25 C 1.47148 * 120.97919 * 90.00241 * 16 13 12 26 26 H 1.08998 * 109.47435 * 299.99967 * 1 2 3 27 27 H 1.08998 * 109.46685 * 60.00174 * 1 2 3 28 28 H 1.08995 * 109.47071 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47161 * 190.52343 * 3 2 1 30 30 H 1.08994 * 109.46832 * 310.52473 * 3 2 1 31 31 H 1.09005 * 109.46539 * 70.52189 * 3 2 1 32 32 H 0.97001 * 120.00184 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47335 * 180.02562 * 12 2 1 34 34 H 1.09004 * 109.46782 * 300.00268 * 12 2 1 35 35 H 1.08993 * 109.68336 * 249.20990 * 17 16 13 36 36 H 1.09001 * 109.67642 * 9.75814 * 17 16 13 37 37 H 1.09001 * 109.65377 * 292.57279 * 18 17 16 38 38 H 1.08995 * 109.48101 * 172.39861 * 18 17 16 39 39 H 1.09001 * 109.46965 * 60.25262 * 22 20 19 40 40 H 1.08997 * 109.68635 * 350.23590 * 25 16 13 41 41 H 1.09003 * 109.68254 * 110.75676 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5819 -1.6351 1.1336 6 6 1.7855 -0.1829 2.4801 7 7 2.5211 -0.5508 3.5063 8 14 0.4060 1.0545 2.7158 9 1 -0.8771 0.3336 2.9144 10 1 0.6919 1.8936 3.9071 11 1 0.3065 1.9198 1.5130 12 6 2.0401 -0.7212 -1.2492 13 16 1.4354 0.1339 -2.7303 14 8 0.0280 -0.0182 -2.8544 15 8 2.0480 1.4101 -2.8543 16 7 2.0531 -0.7407 -3.9936 17 6 3.3633 -0.4090 -4.5758 18 6 4.1987 -1.6976 -4.6409 19 8 3.4455 -2.7114 -5.3106 20 6 2.2387 -3.0829 -4.6401 21 1 2.4716 -3.4209 -3.6303 22 6 1.5523 -4.2121 -5.4114 23 9 0.3687 -4.5710 -4.7577 24 9 1.2560 -3.7782 -6.7080 25 6 1.3053 -1.8688 -4.5712 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1138 1.4482 -0.1877 30 1 1.5316 2.0076 -0.7811 31 1 1.8380 1.8992 0.9689 32 1 2.3473 -0.1799 4.3855 33 1 3.1300 -0.7216 -1.2490 34 1 1.6767 -1.7489 -1.2492 35 1 3.2276 -0.0050 -5.5789 36 1 3.8680 0.3260 -3.9487 37 1 4.4394 -2.0299 -3.6311 38 1 5.1203 -1.5059 -5.1905 39 1 2.2166 -5.0749 -5.4600 40 1 0.4468 -2.1012 -3.9411 41 1 0.9654 -1.6091 -5.5737 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831404580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:50 Heat of formation + Delta-G solvation = -192.772607 kcal Electronic energy + Delta-G solvation = -28214.312747 eV Core-core repulsion = 23893.500444 eV Total energy + Delta-G solvation = -4320.812303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.25082 -47.22859 -39.62632 -36.91128 -36.78348 -35.65950 -35.04350 -32.50481 -32.02409 -28.33230 -27.52734 -26.41984 -26.13590 -25.07653 -23.43328 -21.46528 -19.74703 -18.97623 -17.96288 -17.80174 -17.70042 -16.95005 -16.28934 -16.23123 -15.95517 -15.82176 -15.52634 -15.01814 -14.82277 -14.33057 -14.18313 -13.89301 -13.57768 -13.47147 -13.23784 -13.09618 -12.96806 -12.57429 -12.47263 -12.37518 -11.91527 -11.87031 -11.62912 -11.59373 -11.46276 -11.17084 -11.10405 -10.92671 -10.78035 -10.64058 -10.25848 -10.13063 -10.00069 -9.23964 -9.00811 -8.81028 -8.45213 -6.27753 -4.21769 0.49340 2.68662 2.78652 3.21136 3.30872 3.34728 3.71153 3.92806 3.95601 4.09893 4.29457 4.39266 4.42044 4.51743 4.62756 4.86557 4.91135 5.00422 5.01718 5.04281 5.22483 5.31656 5.38633 5.51068 5.64222 5.77867 5.92122 6.15138 6.24508 6.27978 6.37257 6.43394 6.56631 6.66835 6.80699 7.08691 7.24109 7.57296 8.31318 8.76833 9.38554 10.84566 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.004178 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.229144 B = 6700.111816 C = 6984.829861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.056 3.944 3 C -0.170 4.170 4 C -0.514 4.514 5 H 0.077 0.923 6 C 0.082 3.918 7 N -0.882 5.882 8 Si 0.863 3.137 9 H -0.279 1.279 10 H -0.298 1.298 11 H -0.244 1.244 12 C -0.573 4.573 13 S 2.586 3.414 14 O -0.956 6.956 15 O -0.955 6.955 16 N -1.009 6.009 17 C 0.085 3.915 18 C 0.049 3.951 19 O -0.365 6.365 20 C 0.024 3.976 21 H 0.099 0.901 22 C 0.277 3.723 23 F -0.193 7.193 24 F -0.195 7.195 25 C 0.092 3.908 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.067 0.933 32 H 0.266 0.734 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.065 0.935 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.108 0.892 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.498 -5.428 -17.494 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.053 3.947 3 C -0.227 4.227 4 C -0.552 4.552 5 H 0.095 0.905 6 C -0.122 4.122 7 N -0.517 5.517 8 Si 0.693 3.307 9 H -0.206 1.206 10 H -0.225 1.225 11 H -0.169 1.169 12 C -0.706 4.706 13 S 2.686 3.314 14 O -0.947 6.947 15 O -0.946 6.946 16 N -0.845 5.845 17 C -0.041 4.041 18 C -0.029 4.029 19 O -0.283 6.283 20 C -0.037 4.037 21 H 0.116 0.884 22 C 0.223 3.777 23 F -0.174 7.174 24 F -0.177 7.177 25 C -0.034 4.034 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.131 0.869 39 H 0.140 0.860 40 H 0.126 0.874 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.020 -4.699 -17.621 18.348 hybrid contribution -0.537 0.162 0.849 1.018 sum 1.483 -4.537 -16.772 17.438 Atomic orbital electron populations 1.22815 0.97891 1.02255 1.00852 1.18219 0.91746 0.92511 0.92217 1.22684 1.01300 0.96902 1.01816 1.20571 1.36827 1.10057 0.87713 0.90487 1.24924 0.95534 0.95800 0.95958 1.69988 1.36407 1.44381 1.00942 0.87637 0.83364 0.82431 0.77220 1.20616 1.22548 1.16910 1.30440 1.11872 1.12834 1.15488 1.05998 0.74835 0.75198 0.75412 1.93554 1.29146 1.86417 1.85556 1.93561 1.78032 1.37339 1.85630 1.58137 1.29461 1.46600 1.50285 1.22190 0.83104 0.97668 1.01094 1.23197 0.94090 0.86986 0.98623 1.87886 1.33552 1.57497 1.49382 1.23499 0.87750 0.94882 0.97519 0.88357 1.21576 0.83326 0.97057 0.75774 1.93038 1.50440 1.92583 1.81352 1.93004 1.94235 1.91366 1.39055 1.21961 0.94186 0.85210 1.02025 0.92763 0.93478 0.91875 0.92323 0.94463 0.91417 0.92359 0.85576 0.85815 0.90111 0.87696 0.91633 0.86858 0.85972 0.87373 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.97 7.33 37.16 0.27 -3.69 16 2 C 0.06 1.24 0.52 -155.66 -0.08 1.16 16 3 C -0.17 -3.73 6.89 37.16 0.26 -3.47 16 4 C -0.51 -13.40 8.60 -34.44 -0.30 -13.70 16 5 H 0.08 2.13 7.99 -52.49 -0.42 1.71 16 6 C 0.08 2.24 5.22 -17.82 -0.09 2.15 16 7 N -0.88 -25.62 13.96 55.43 0.77 -24.84 16 8 Si 0.86 20.88 22.94 -169.99 -3.90 16.98 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.24 -5.52 4.63 56.52 0.26 -5.26 16 12 C -0.57 -9.99 5.10 37.16 0.19 -9.81 16 13 S 2.59 43.44 4.46 -107.50 -0.48 42.96 16 14 O -0.96 -18.25 14.43 -57.54 -0.83 -19.08 16 15 O -0.96 -17.91 14.66 -57.54 -0.84 -18.75 16 16 N -1.01 -13.04 3.27 -112.82 -0.37 -13.41 16 17 C 0.09 0.88 6.53 -3.31 -0.02 0.86 16 18 C 0.05 0.41 7.00 37.53 0.26 0.67 16 19 O -0.36 -3.58 10.32 -35.23 -0.36 -3.94 16 20 C 0.02 0.23 3.01 -26.58 -0.08 0.15 16 21 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 22 C 0.28 2.41 5.14 37.16 0.19 2.60 16 23 F -0.19 -1.98 16.98 2.25 0.04 -1.94 16 24 F -0.20 -2.09 16.65 2.25 0.04 -2.05 16 25 C 0.09 1.09 5.53 -3.53 -0.02 1.07 16 26 H 0.05 1.23 2.66 -51.93 -0.14 1.09 16 27 H 0.05 0.97 5.46 -51.93 -0.28 0.69 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.06 1.20 8.11 -51.93 -0.42 0.78 16 30 H 0.04 0.77 6.23 -51.93 -0.32 0.44 16 31 H 0.07 1.54 4.03 -51.93 -0.21 1.33 16 32 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.13 1.97 8.14 -51.93 -0.42 1.54 16 34 H 0.12 1.93 8.14 -51.92 -0.42 1.50 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 1.04 7.22 -51.93 -0.37 0.67 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.11 1.30 7.12 -51.93 -0.37 0.93 16 41 H 0.09 1.02 7.62 -51.93 -0.40 0.62 16 LS Contribution 327.28 15.07 4.93 4.93 Total: -1.00 -33.02 327.28 -6.02 -39.03 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.59 Total: 2.11 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: 0.58 Total: -22.00 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.40 Total: -38.25 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -2.04 Total: -41.77 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.08 Total: -3.99 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -3.90 Total: 16.98 kcal Atomic # 16 Polarization: 43.44 SS G_CDS: -0.48 Total: 42.96 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.02 -6.02 -39.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831404580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.740 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds