Wall clock time and date at job start Tue Mar 31 2020 14:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47340 * 2 1 4 4 C 1.50700 * 109.47051 * 120.00215 * 2 1 3 5 5 H 1.08001 * 120.00329 * 114.77890 * 4 2 1 6 6 C 1.37876 * 119.99812 * 295.04619 * 4 2 1 7 7 N 1.31513 * 120.00016 * 199.85349 * 6 4 2 8 8 Si 1.86800 * 120.00134 * 19.85927 * 6 4 2 9 9 H 1.48506 * 109.47324 * 84.62146 * 8 6 4 10 10 H 1.48497 * 109.47195 * 204.62565 * 8 6 4 11 11 H 1.48505 * 109.46913 * 324.62515 * 8 6 4 12 12 C 1.53004 * 109.47619 * 239.99995 * 2 1 3 13 13 S 1.81398 * 109.46713 * 59.99667 * 12 2 1 14 14 O 1.42101 * 110.55083 * 291.63012 * 13 12 2 15 15 O 1.42107 * 110.54260 * 68.38065 * 13 12 2 16 16 N 1.65604 * 104.45048 * 180.02562 * 13 12 2 17 17 C 1.47154 * 120.98514 * 269.72392 * 16 13 12 18 18 C 1.53714 * 108.16163 * 129.42822 * 17 16 13 19 19 O 1.42959 * 109.14524 * 52.53993 * 18 17 16 20 20 C 1.42962 * 114.16560 * 297.28426 * 19 18 17 21 21 H 1.09000 * 109.55364 * 302.63287 * 20 19 18 22 22 C 1.53003 * 109.51195 * 182.50730 * 20 19 18 23 23 F 1.39902 * 109.47204 * 180.25317 * 22 20 19 24 24 F 1.39899 * 109.47256 * 300.25922 * 22 20 19 25 25 C 1.47148 * 120.97919 * 90.00241 * 16 13 12 26 26 H 1.08998 * 109.47435 * 299.99967 * 1 2 3 27 27 H 1.08998 * 109.46685 * 60.00174 * 1 2 3 28 28 H 1.08995 * 109.47071 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47161 * 190.52343 * 3 2 1 30 30 H 1.08994 * 109.46832 * 310.52473 * 3 2 1 31 31 H 1.09005 * 109.46539 * 70.52189 * 3 2 1 32 32 H 0.97001 * 120.00184 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47335 * 180.02562 * 12 2 1 34 34 H 1.09004 * 109.46782 * 300.00268 * 12 2 1 35 35 H 1.08993 * 109.68336 * 249.20990 * 17 16 13 36 36 H 1.09001 * 109.67642 * 9.75814 * 17 16 13 37 37 H 1.09001 * 109.65377 * 292.57279 * 18 17 16 38 38 H 1.08995 * 109.48101 * 172.39861 * 18 17 16 39 39 H 1.09001 * 109.46965 * 60.25262 * 22 20 19 40 40 H 1.08997 * 109.68635 * 350.23590 * 25 16 13 41 41 H 1.09003 * 109.68254 * 110.75676 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5819 -1.6351 1.1336 6 6 1.7855 -0.1829 2.4801 7 7 2.5211 -0.5508 3.5063 8 14 0.4060 1.0545 2.7158 9 1 -0.8771 0.3336 2.9144 10 1 0.6919 1.8936 3.9071 11 1 0.3065 1.9198 1.5130 12 6 2.0401 -0.7212 -1.2492 13 16 1.4354 0.1339 -2.7303 14 8 0.0280 -0.0182 -2.8544 15 8 2.0480 1.4101 -2.8543 16 7 2.0531 -0.7407 -3.9936 17 6 3.3633 -0.4090 -4.5758 18 6 4.1987 -1.6976 -4.6409 19 8 3.4455 -2.7114 -5.3106 20 6 2.2387 -3.0829 -4.6401 21 1 2.4716 -3.4209 -3.6303 22 6 1.5523 -4.2121 -5.4114 23 9 0.3687 -4.5710 -4.7577 24 9 1.2560 -3.7782 -6.7080 25 6 1.3053 -1.8688 -4.5712 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1138 1.4482 -0.1877 30 1 1.5316 2.0076 -0.7811 31 1 1.8380 1.8992 0.9689 32 1 2.3473 -0.1799 4.3855 33 1 3.1300 -0.7216 -1.2490 34 1 1.6767 -1.7489 -1.2492 35 1 3.2276 -0.0050 -5.5789 36 1 3.8680 0.3260 -3.9487 37 1 4.4394 -2.0299 -3.6311 38 1 5.1203 -1.5059 -5.1905 39 1 2.2166 -5.0749 -5.4600 40 1 0.4468 -2.1012 -3.9411 41 1 0.9654 -1.6091 -5.5737 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831404580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:50 Heat of formation + Delta-G solvation = -217.632207 kcal Electronic energy + Delta-G solvation = -28215.390740 eV Core-core repulsion = 23893.500444 eV Total energy + Delta-G solvation = -4321.890296 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.97431 -47.96792 -40.39859 -38.51105 -38.30715 -37.05319 -35.97927 -34.06282 -33.25069 -29.19385 -28.94037 -28.15082 -27.14762 -26.92634 -24.18293 -22.34810 -21.40438 -20.12079 -19.15249 -18.60276 -18.42376 -18.17172 -17.77458 -17.35987 -17.23179 -16.96292 -16.80568 -16.12864 -15.84300 -15.28328 -15.09310 -15.00605 -14.91567 -14.80963 -14.68428 -14.32667 -14.21648 -14.19616 -13.84341 -13.39725 -13.30223 -13.21979 -12.92669 -12.76366 -12.66767 -12.63839 -12.60881 -12.14260 -12.05810 -11.98109 -11.85251 -11.50627 -11.44319 -10.96277 -10.69511 -10.44786 -9.93947 -8.37929 -6.33135 -0.82513 1.28986 1.35817 1.41219 1.53123 2.11335 2.28967 2.74302 2.96275 2.99539 3.08752 3.27176 3.34995 3.50220 3.75746 3.81832 3.95601 3.98829 4.10330 4.17958 4.23243 4.27475 4.33371 4.50138 4.56149 4.63280 4.65168 4.68736 4.73992 4.89561 4.92564 4.95707 5.13088 5.34305 5.37840 5.50295 5.62545 5.88066 6.24931 6.68168 7.29712 8.77609 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.004178 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.229144 B = 6700.111816 C = 6984.829861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.046 3.954 3 C -0.174 4.174 4 C -0.506 4.506 5 H 0.052 0.948 6 C 0.034 3.966 7 N -0.927 5.927 8 Si 0.903 3.097 9 H -0.277 1.277 10 H -0.302 1.302 11 H -0.220 1.220 12 C -0.579 4.579 13 S 2.606 3.394 14 O -0.981 6.981 15 O -0.976 6.976 16 N -1.002 6.002 17 C 0.074 3.926 18 C 0.048 3.952 19 O -0.369 6.369 20 C 0.025 3.975 21 H 0.114 0.886 22 C 0.274 3.726 23 F -0.204 7.204 24 F -0.208 7.208 25 C 0.083 3.917 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.266 0.734 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.142 0.858 39 H 0.161 0.839 40 H 0.103 0.897 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.876 -5.723 -19.342 20.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.043 3.957 3 C -0.232 4.232 4 C -0.545 4.545 5 H 0.071 0.929 6 C -0.166 4.166 7 N -0.566 5.566 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.231 1.231 11 H -0.145 1.145 12 C -0.711 4.711 13 S 2.705 3.295 14 O -0.972 6.972 15 O -0.966 6.966 16 N -0.841 5.841 17 C -0.051 4.051 18 C -0.029 4.029 19 O -0.288 6.288 20 C -0.036 4.036 21 H 0.132 0.868 22 C 0.220 3.780 23 F -0.185 7.185 24 F -0.190 7.190 25 C -0.043 4.043 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.092 0.908 38 H 0.160 0.840 39 H 0.178 0.822 40 H 0.121 0.879 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.391 -4.987 -19.480 20.250 hybrid contribution -0.587 0.198 1.322 1.460 sum 1.803 -4.789 -18.158 18.866 Atomic orbital electron populations 1.22842 0.97612 1.02921 1.00977 1.18204 0.92079 0.92738 0.92644 1.22698 1.02143 0.96803 1.01517 1.20839 1.35342 1.09049 0.89264 0.92936 1.25579 0.97256 0.97789 0.95997 1.70090 1.38352 1.46629 1.01487 0.86958 0.80940 0.81130 0.77760 1.20359 1.23074 1.14453 1.30423 1.13100 1.13416 1.14130 1.05134 0.74061 0.74812 0.75494 1.93517 1.30896 1.86771 1.85970 1.93530 1.78263 1.38788 1.86015 1.57789 1.30587 1.46706 1.48979 1.22514 0.82043 0.99199 1.01297 1.23379 0.94336 0.85491 0.99716 1.87892 1.33398 1.57718 1.49782 1.23545 0.87377 0.94029 0.98610 0.86837 1.21955 0.83236 0.98007 0.74789 1.93017 1.51323 1.92648 1.81543 1.92976 1.94356 1.91631 1.40022 1.22129 0.94739 0.85791 1.01591 0.93620 0.92274 0.91116 0.91461 0.93299 0.92609 0.92453 0.83859 0.84161 0.89406 0.87306 0.90778 0.84043 0.82238 0.87925 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.87 7.33 71.98 0.53 -7.34 16 2 C 0.05 1.97 0.52 -52.93 -0.03 1.95 16 3 C -0.17 -7.38 6.89 71.98 0.50 -6.89 16 4 C -0.51 -26.35 8.60 25.60 0.22 -26.13 16 5 H 0.05 2.93 7.99 -2.91 -0.02 2.90 16 6 C 0.03 1.85 5.22 84.65 0.44 2.29 16 7 N -0.93 -54.88 13.96 21.45 0.30 -54.58 16 8 Si 0.90 42.67 22.94 68.60 1.57 44.24 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 10 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 11 H -0.22 -9.52 4.63 99.48 0.46 -9.06 16 12 C -0.58 -19.08 5.10 71.98 0.37 -18.71 16 13 S 2.61 82.64 4.46 -56.49 -0.25 82.38 16 14 O -0.98 -35.95 14.43 -127.65 -1.84 -37.79 16 15 O -0.98 -34.75 14.66 -127.65 -1.87 -36.62 16 16 N -1.00 -23.75 3.27 -510.86 -1.67 -25.42 16 17 C 0.07 1.34 6.53 86.49 0.56 1.91 16 18 C 0.05 0.64 7.00 72.22 0.51 1.15 16 19 O -0.37 -6.07 10.32 -148.98 -1.54 -7.61 16 20 C 0.03 0.42 3.01 30.70 0.09 0.51 16 21 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 22 C 0.27 4.10 5.14 71.98 0.37 4.47 16 23 F -0.20 -3.83 16.98 44.97 0.76 -3.07 16 24 F -0.21 -4.07 16.65 44.97 0.75 -3.33 16 25 C 0.08 1.82 5.53 86.36 0.48 2.29 16 26 H 0.05 1.98 2.66 -2.39 -0.01 1.97 16 27 H 0.06 2.34 5.46 -2.39 -0.01 2.33 16 28 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.07 2.67 8.11 -2.39 -0.02 2.65 16 30 H 0.05 1.93 6.23 -2.39 -0.01 1.92 16 31 H 0.06 2.46 4.03 -2.38 -0.01 2.45 16 32 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 33 H 0.14 4.16 8.14 -2.39 -0.02 4.14 16 34 H 0.14 4.09 8.14 -2.39 -0.02 4.07 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.11 1.90 7.22 -2.39 -0.02 1.88 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.16 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.10 2.34 7.12 -2.39 -0.02 2.32 16 41 H 0.08 1.87 7.62 -2.39 -0.02 1.86 16 Total: -1.00 -70.64 327.28 1.06 -69.58 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.81 Total: 16.71 kcal Atomic # 6 Polarization: -48.54 SS G_CDS: 4.04 Total: -44.50 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -1.37 Total: -80.00 kcal Atomic # 8 Polarization: -76.77 SS G_CDS: -5.25 Total: -82.02 kcal Atomic # 9 Polarization: -7.91 SS G_CDS: 1.51 Total: -6.40 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.57 Total: 44.24 kcal Atomic # 16 Polarization: 82.64 SS G_CDS: -0.25 Total: 82.38 kcal Total: -70.64 1.06 -69.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831404580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.050 kcal (2) G-P(sol) polarization free energy of solvation -70.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds