Wall clock time and date at job start Tue Mar 31 2020 15:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47427 * 2 1 4 4 C 1.53007 * 109.47095 * 239.99188 * 2 1 3 5 5 C 1.50699 * 109.46839 * 65.73906 * 4 2 1 6 6 O 1.21290 * 119.99835 * 6.26652 * 5 4 2 7 7 N 1.34773 * 119.99696 * 185.99871 * 5 4 2 8 8 C 1.37102 * 120.00068 * 355.77775 * 7 5 4 9 9 H 1.07998 * 120.00182 * 321.21880 * 8 7 5 10 10 C 1.38942 * 119.99675 * 141.22053 * 8 7 5 11 11 N 1.31413 * 120.00135 * 161.71289 * 10 8 7 12 12 Si 1.86798 * 120.00237 * 341.71349 * 10 8 7 13 13 H 1.48500 * 109.47475 * 94.89156 * 12 10 8 14 14 H 1.48499 * 109.47309 * 214.89192 * 12 10 8 15 15 H 1.48503 * 109.47286 * 334.88994 * 12 10 8 16 16 C 1.46502 * 119.99717 * 175.78579 * 7 5 4 17 17 C 1.50695 * 109.47486 * 89.99625 * 16 7 5 18 18 O 1.20829 * 120.00257 * 359.97438 * 17 16 7 19 19 O 1.34227 * 120.00353 * 179.97438 * 17 16 7 20 20 C 1.50701 * 109.46858 * 119.99776 * 2 1 3 21 21 C 1.38233 * 119.98856 * 63.71759 * 20 2 1 22 22 C 1.38193 * 120.04734 * 179.76508 * 21 20 2 23 23 C 1.38488 * 120.02409 * 0.51653 * 22 21 20 24 24 F 1.35099 * 120.01216 * 179.76315 * 23 22 21 25 25 C 1.38394 * 119.97919 * 359.74053 * 23 22 21 26 26 C 1.38445 * 119.95002 * 0.02562 * 25 23 22 27 27 F 1.35095 * 120.01523 * 180.02562 * 26 25 23 28 28 H 1.08997 * 109.47399 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47337 * 300.00617 * 1 2 3 30 30 H 1.09004 * 109.46834 * 60.00409 * 1 2 3 31 31 H 1.08997 * 109.47164 * 305.73593 * 4 2 1 32 32 H 1.09000 * 109.46848 * 185.73680 * 4 2 1 33 33 H 0.97002 * 120.00435 * 180.02562 * 11 10 8 34 34 H 1.09001 * 109.47004 * 209.99501 * 16 7 5 35 35 H 1.09004 * 109.46961 * 329.99328 * 16 7 5 36 36 H 0.96700 * 117.00256 * 179.97438 * 19 17 16 37 37 H 1.07993 * 119.97787 * 0.02752 * 21 20 2 38 38 H 1.08000 * 119.98619 * 180.25313 * 22 21 20 39 39 H 1.08000 * 120.03010 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7215 -1.2492 5 6 1.6570 0.0661 -2.4756 6 8 1.1385 1.1563 -2.3587 7 7 1.8956 -0.4387 -3.7022 8 6 2.5642 -1.6281 -3.8359 9 1 3.3933 -1.8579 -3.1830 10 6 2.1753 -2.5379 -4.8114 11 7 2.9993 -3.4897 -5.1882 12 14 0.4810 -2.4081 -5.5873 13 1 0.5726 -1.6303 -6.8490 14 1 -0.0345 -3.7693 -5.8812 15 1 -0.4422 -1.7213 -4.6484 16 6 1.4406 0.2837 -4.8928 17 6 2.5201 1.2312 -5.3486 18 8 3.5625 1.2968 -4.7411 19 8 2.3237 2.0024 -6.4296 20 6 2.0323 -0.7104 1.2305 21 6 1.7627 -2.0541 1.4110 22 6 2.2269 -2.7079 2.5366 23 6 2.9535 -2.0148 3.4902 24 9 3.4030 -2.6531 4.5928 25 6 3.2195 -0.6682 3.3132 26 6 2.7582 -0.0154 2.1829 27 9 3.0175 1.2990 2.0085 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.5953 -1.7152 -1.3019 32 1 3.1252 -0.8113 -1.1993 33 1 2.7279 -4.1246 -5.8695 34 1 1.2225 -0.4285 -5.6886 35 1 0.5393 0.8480 -4.6530 36 1 3.0448 2.5946 -6.6832 37 1 1.1926 -2.5944 0.6698 38 1 2.0192 -3.7587 2.6746 39 1 3.7864 -0.1271 4.0562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833516463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:31 Heat of formation + Delta-G solvation = -184.714117 kcal Electronic energy + Delta-G solvation = -28037.836018 eV Core-core repulsion = 23581.929206 eV Total energy + Delta-G solvation = -4455.906812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.06920 -48.95821 -39.98539 -39.34530 -38.47102 -35.77488 -35.12775 -34.44386 -32.12008 -30.86001 -29.72482 -28.67557 -26.78882 -24.90122 -23.80540 -22.96076 -21.66782 -20.28592 -19.03173 -18.29377 -17.66288 -17.48402 -17.05171 -16.62300 -16.02224 -15.93849 -15.74357 -15.51805 -15.30699 -15.08845 -14.85863 -14.59272 -14.46589 -14.16627 -13.67079 -13.25501 -12.94758 -12.87054 -12.69679 -12.58898 -12.37668 -12.00701 -11.79542 -11.73097 -11.58436 -11.09813 -11.04545 -10.85005 -10.73945 -10.55778 -10.37776 -10.17685 -9.97143 -9.39336 -9.11768 -8.80715 -8.57238 -8.06880 -6.61920 -4.27554 0.91476 0.95956 2.82086 2.89523 3.07209 3.11190 3.25429 3.32239 3.72518 3.82017 3.93263 4.22428 4.38513 4.53462 4.67737 4.78096 4.87040 5.10186 5.33751 5.48076 5.56145 5.60425 5.71868 5.76621 5.85140 5.85733 5.95143 5.99172 6.02277 6.09163 6.20941 6.28133 6.42107 6.64257 6.66523 6.75338 6.99056 7.07237 7.89233 8.10176 8.48221 8.76564 9.11527 9.44419 10.48336 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015071 B = 0.003759 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.441582 B = 7446.297132 C = 8364.388193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 H 0.091 0.909 4 C -0.108 4.108 5 C 0.496 3.504 6 O -0.589 6.589 7 N -0.451 5.451 8 C -0.340 4.340 9 H 0.108 0.892 10 C 0.065 3.935 11 N -0.853 5.853 12 Si 0.866 3.134 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.256 1.256 16 C 0.107 3.893 17 C 0.464 3.536 18 O -0.497 6.497 19 O -0.528 6.528 20 C -0.108 4.108 21 C -0.055 4.055 22 C -0.160 4.160 23 C 0.117 3.883 24 F -0.137 7.137 25 C -0.192 4.192 26 C 0.130 3.870 27 F -0.128 7.128 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.277 0.723 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.399 0.601 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.973 2.042 9.682 10.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.061 4.061 3 H 0.110 0.890 4 C -0.147 4.147 5 C 0.288 3.712 6 O -0.473 6.473 7 N -0.172 5.172 8 C -0.467 4.467 9 H 0.125 0.875 10 C -0.143 4.143 11 N -0.487 5.487 12 Si 0.693 3.307 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.180 1.180 16 C -0.018 4.018 17 C 0.304 3.696 18 O -0.382 6.382 19 O -0.339 6.339 20 C -0.109 4.109 21 C -0.073 4.073 22 C -0.179 4.179 23 C 0.097 3.903 24 F -0.115 7.115 25 C -0.212 4.212 26 C 0.111 3.889 27 F -0.106 7.106 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.257 0.743 37 H 0.165 0.835 38 H 0.159 0.841 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.169 2.166 9.948 11.001 hybrid contribution 0.179 0.298 -0.664 0.749 sum -3.990 2.464 9.284 10.401 Atomic orbital electron populations 1.21878 0.93499 1.01660 1.02854 1.19931 0.96830 0.99792 0.89503 0.89043 1.21422 1.02774 0.99893 0.90640 1.20386 0.79656 0.86516 0.84690 1.90543 1.47580 1.22327 1.86843 1.43443 1.52185 1.19777 1.01803 1.19111 1.14250 0.91352 1.22019 0.87467 1.25401 0.97340 0.95262 0.96284 1.69726 1.34234 1.16658 1.28118 0.87095 0.85440 0.78189 0.80009 1.19703 1.20722 1.17962 1.21341 0.94834 0.93933 0.91673 1.24450 0.89271 0.78944 0.76912 1.90669 1.27941 1.64966 1.54626 1.84569 1.49709 1.52966 1.46692 1.20185 0.99058 0.94827 0.96848 1.20873 0.97169 0.92863 0.96376 1.21206 1.00738 1.01361 0.94571 1.17269 0.98181 0.90077 0.84736 1.91509 1.87338 1.81702 1.50955 1.20955 1.06207 0.94277 0.99774 1.17172 0.98507 0.78532 0.94697 1.91523 1.92077 1.31840 1.95210 0.92945 0.93282 0.90162 0.88540 0.89309 0.91200 0.88015 0.87032 0.74281 0.83491 0.84072 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.80 37.16 0.33 -1.74 16 2 C -0.04 -0.66 2.18 -91.77 -0.20 -0.86 16 3 H 0.09 1.61 6.83 -51.93 -0.35 1.26 16 4 C -0.11 -1.94 3.56 -27.88 -0.10 -2.04 16 5 C 0.50 10.80 7.23 -10.99 -0.08 10.72 16 6 O -0.59 -13.50 13.89 5.55 0.08 -13.43 16 7 N -0.45 -10.36 1.66 -116.10 -0.19 -10.56 16 8 C -0.34 -8.42 8.96 -14.93 -0.13 -8.55 16 9 H 0.11 2.83 7.46 -52.49 -0.39 2.44 16 10 C 0.07 1.62 5.36 -17.47 -0.09 1.52 16 11 N -0.85 -22.41 13.96 55.50 0.77 -21.63 16 12 Si 0.87 18.42 24.83 -169.99 -4.22 14.20 16 13 H -0.27 -5.54 6.71 56.52 0.38 -5.16 16 14 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 15 H -0.26 -5.29 7.10 56.52 0.40 -4.89 16 16 C 0.11 2.29 4.73 -5.20 -0.02 2.26 16 17 C 0.46 9.77 8.40 36.00 0.30 10.08 16 18 O -0.50 -12.03 17.19 -18.75 -0.32 -12.35 16 19 O -0.53 -8.70 13.42 -39.25 -0.53 -9.22 16 20 C -0.11 -1.48 4.79 -104.54 -0.50 -1.98 16 21 C -0.05 -0.64 8.77 -39.60 -0.35 -0.99 16 22 C -0.16 -1.73 10.03 -39.51 -0.40 -2.13 16 23 C 0.12 1.36 7.30 -39.43 -0.29 1.07 16 24 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 25 C -0.19 -2.29 10.01 -39.45 -0.39 -2.68 16 26 C 0.13 1.77 7.25 -39.42 -0.29 1.49 16 27 F -0.13 -1.90 16.20 2.25 0.04 -1.86 16 28 H 0.05 0.67 7.61 -51.93 -0.40 0.28 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.35 6.25 -51.93 -0.32 1.03 16 31 H 0.10 1.62 7.26 -51.93 -0.38 1.25 16 32 H 0.09 1.64 7.86 -51.93 -0.41 1.23 16 33 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 34 H 0.10 2.15 3.11 -51.93 -0.16 1.99 16 35 H 0.11 2.18 7.49 -51.93 -0.39 1.80 16 36 H 0.40 4.63 9.10 45.56 0.41 5.05 16 37 H 0.15 1.54 7.18 -52.49 -0.38 1.16 16 38 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 339.39 15.07 5.11 5.11 Total: -1.00 -30.16 339.39 -4.62 -34.78 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -3.19 Total: 10.35 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -2.21 Total: 6.17 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.58 Total: -32.19 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -0.77 Total: -35.00 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.08 Total: -3.43 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -4.22 Total: 14.20 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.16 -4.62 -34.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833516463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.933 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds