Wall clock time and date at job start Tue Mar 31 2020 15:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47427 * 2 1 4 4 C 1.53007 * 109.47095 * 239.99188 * 2 1 3 5 5 C 1.50699 * 109.46839 * 65.73906 * 4 2 1 6 6 O 1.21290 * 119.99835 * 6.26652 * 5 4 2 7 7 N 1.34773 * 119.99696 * 185.99871 * 5 4 2 8 8 C 1.37102 * 120.00068 * 355.77775 * 7 5 4 9 9 H 1.07998 * 120.00182 * 321.21880 * 8 7 5 10 10 C 1.38942 * 119.99675 * 141.22053 * 8 7 5 11 11 N 1.31413 * 120.00135 * 161.71289 * 10 8 7 12 12 Si 1.86798 * 120.00237 * 341.71349 * 10 8 7 13 13 H 1.48500 * 109.47475 * 94.89156 * 12 10 8 14 14 H 1.48499 * 109.47309 * 214.89192 * 12 10 8 15 15 H 1.48503 * 109.47286 * 334.88994 * 12 10 8 16 16 C 1.46502 * 119.99717 * 175.78579 * 7 5 4 17 17 C 1.50695 * 109.47486 * 89.99625 * 16 7 5 18 18 O 1.20829 * 120.00257 * 359.97438 * 17 16 7 19 19 O 1.34227 * 120.00353 * 179.97438 * 17 16 7 20 20 C 1.50701 * 109.46858 * 119.99776 * 2 1 3 21 21 C 1.38233 * 119.98856 * 63.71759 * 20 2 1 22 22 C 1.38193 * 120.04734 * 179.76508 * 21 20 2 23 23 C 1.38488 * 120.02409 * 0.51653 * 22 21 20 24 24 F 1.35099 * 120.01216 * 179.76315 * 23 22 21 25 25 C 1.38394 * 119.97919 * 359.74053 * 23 22 21 26 26 C 1.38445 * 119.95002 * 0.02562 * 25 23 22 27 27 F 1.35095 * 120.01523 * 180.02562 * 26 25 23 28 28 H 1.08997 * 109.47399 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47337 * 300.00617 * 1 2 3 30 30 H 1.09004 * 109.46834 * 60.00409 * 1 2 3 31 31 H 1.08997 * 109.47164 * 305.73593 * 4 2 1 32 32 H 1.09000 * 109.46848 * 185.73680 * 4 2 1 33 33 H 0.97002 * 120.00435 * 180.02562 * 11 10 8 34 34 H 1.09001 * 109.47004 * 209.99501 * 16 7 5 35 35 H 1.09004 * 109.46961 * 329.99328 * 16 7 5 36 36 H 0.96700 * 117.00256 * 179.97438 * 19 17 16 37 37 H 1.07993 * 119.97787 * 0.02752 * 21 20 2 38 38 H 1.08000 * 119.98619 * 180.25313 * 22 21 20 39 39 H 1.08000 * 120.03010 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7215 -1.2492 5 6 1.6570 0.0661 -2.4756 6 8 1.1385 1.1563 -2.3587 7 7 1.8956 -0.4387 -3.7022 8 6 2.5642 -1.6281 -3.8359 9 1 3.3933 -1.8579 -3.1830 10 6 2.1753 -2.5379 -4.8114 11 7 2.9993 -3.4897 -5.1882 12 14 0.4810 -2.4081 -5.5873 13 1 0.5726 -1.6303 -6.8490 14 1 -0.0345 -3.7693 -5.8812 15 1 -0.4422 -1.7213 -4.6484 16 6 1.4406 0.2837 -4.8928 17 6 2.5201 1.2312 -5.3486 18 8 3.5625 1.2968 -4.7411 19 8 2.3237 2.0024 -6.4296 20 6 2.0323 -0.7104 1.2305 21 6 1.7627 -2.0541 1.4110 22 6 2.2269 -2.7079 2.5366 23 6 2.9535 -2.0148 3.4902 24 9 3.4030 -2.6531 4.5928 25 6 3.2195 -0.6682 3.3132 26 6 2.7582 -0.0154 2.1829 27 9 3.0175 1.2990 2.0085 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.5953 -1.7152 -1.3019 32 1 3.1252 -0.8113 -1.1993 33 1 2.7279 -4.1246 -5.8695 34 1 1.2225 -0.4285 -5.6886 35 1 0.5393 0.8480 -4.6530 36 1 3.0448 2.5946 -6.6832 37 1 1.1926 -2.5944 0.6698 38 1 2.0192 -3.7587 2.6746 39 1 3.7864 -0.1271 4.0562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833516463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:30 Heat of formation + Delta-G solvation = -202.465223 kcal Electronic energy + Delta-G solvation = -28038.605763 eV Core-core repulsion = 23581.929206 eV Total energy + Delta-G solvation = -4456.676557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.04643 -49.98787 -41.62822 -40.65848 -39.84524 -37.33784 -36.77051 -35.83672 -34.00130 -31.79944 -31.09995 -29.97327 -28.28386 -26.70638 -24.86985 -23.99779 -23.17305 -21.59322 -20.71700 -19.32635 -19.26244 -18.98680 -18.48925 -18.01195 -17.47232 -17.15034 -16.98500 -16.73138 -16.65926 -16.33556 -16.32195 -16.09892 -15.62246 -15.40848 -14.99522 -14.74503 -14.49592 -14.18252 -14.11265 -13.99215 -13.65456 -13.48938 -13.17918 -12.87600 -12.80147 -12.62945 -12.58905 -12.37988 -12.03679 -11.98932 -11.89341 -11.68895 -11.66308 -11.15486 -10.55153 -10.04898 -9.89999 -9.59454 -8.50783 -6.20886 -0.06425 0.02519 1.15984 1.22076 1.35857 1.47038 1.64459 2.07145 2.17239 2.35792 2.61798 2.86266 2.98378 3.41202 3.55185 3.59162 3.88682 3.90580 4.06551 4.10472 4.18120 4.24922 4.29977 4.40671 4.57380 4.72651 4.85963 4.87716 4.92815 4.95821 5.03707 5.13107 5.13879 5.27406 5.42150 5.46937 5.56774 5.78201 6.04658 6.16828 6.90291 6.98453 7.28336 7.65570 8.62935 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015071 B = 0.003759 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.441582 B = 7446.297132 C = 8364.388193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 H 0.065 0.935 4 C -0.101 4.101 5 C 0.490 3.510 6 O -0.602 6.602 7 N -0.462 5.462 8 C -0.340 4.340 9 H 0.077 0.923 10 C 0.027 3.973 11 N -0.895 5.895 12 Si 0.919 3.081 13 H -0.255 1.255 14 H -0.277 1.277 15 H -0.245 1.245 16 C 0.097 3.903 17 C 0.469 3.531 18 O -0.538 6.538 19 O -0.509 6.509 20 C -0.119 4.119 21 C -0.054 4.054 22 C -0.148 4.148 23 C 0.115 3.885 24 F -0.136 7.136 25 C -0.189 4.189 26 C 0.111 3.889 27 F -0.141 7.141 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.282 0.718 34 H 0.107 0.893 35 H 0.130 0.870 36 H 0.424 0.576 37 H 0.163 0.837 38 H 0.169 0.831 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 1.518 9.893 11.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.052 4.052 3 H 0.084 0.916 4 C -0.141 4.141 5 C 0.282 3.718 6 O -0.487 6.487 7 N -0.183 5.183 8 C -0.467 4.467 9 H 0.095 0.905 10 C -0.177 4.177 11 N -0.531 5.531 12 Si 0.743 3.257 13 H -0.181 1.181 14 H -0.204 1.204 15 H -0.169 1.169 16 C -0.028 4.028 17 C 0.310 3.690 18 O -0.427 6.427 19 O -0.323 6.323 20 C -0.120 4.120 21 C -0.072 4.072 22 C -0.167 4.167 23 C 0.095 3.905 24 F -0.114 7.114 25 C -0.208 4.208 26 C 0.092 3.908 27 F -0.120 7.120 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.147 0.853 36 H 0.286 0.714 37 H 0.180 0.820 38 H 0.186 0.814 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.715 1.675 10.141 11.760 hybrid contribution 0.726 0.524 -0.725 1.152 sum -4.989 2.199 9.415 10.880 Atomic orbital electron populations 1.21820 0.92447 1.02827 1.02271 1.19746 0.97669 0.98298 0.89472 0.91619 1.21426 1.02141 1.00321 0.90204 1.21006 0.78935 0.86520 0.85329 1.90525 1.48130 1.22906 1.87135 1.43512 1.52413 1.19644 1.02769 1.18863 1.13598 0.92522 1.21764 0.90496 1.25986 1.00432 0.94676 0.96647 1.69813 1.36083 1.17849 1.29334 0.86237 0.81002 0.78593 0.79909 1.18092 1.20361 1.16866 1.21488 0.95588 0.94355 0.91354 1.24339 0.88392 0.78961 0.77262 1.90662 1.29402 1.66425 1.56199 1.84487 1.50650 1.52595 1.44521 1.20057 1.00086 0.95692 0.96140 1.21040 0.97133 0.91983 0.97057 1.21477 0.99236 1.02520 0.93467 1.17375 0.98181 0.90001 0.84919 1.91517 1.87336 1.81606 1.50945 1.21084 1.05756 0.94602 0.99396 1.17353 0.99560 0.78230 0.95647 1.91487 1.92334 1.32802 1.95381 0.90877 0.91951 0.92560 0.87220 0.90451 0.90797 0.87589 0.85253 0.71437 0.81976 0.81365 0.82232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 8.80 71.98 0.63 -3.22 16 2 C -0.03 -1.04 2.18 -11.54 -0.03 -1.06 16 3 H 0.07 2.39 6.83 -2.39 -0.02 2.38 16 4 C -0.10 -3.69 3.56 29.85 0.11 -3.58 16 5 C 0.49 21.45 7.23 87.66 0.63 22.09 16 6 O -0.60 -27.73 13.89 -3.06 -0.04 -27.77 16 7 N -0.46 -21.19 1.66 -639.61 -1.06 -22.25 16 8 C -0.34 -17.05 8.96 84.04 0.75 -16.29 16 9 H 0.08 4.23 7.46 -2.91 -0.02 4.21 16 10 C 0.03 1.36 5.36 84.92 0.46 1.81 16 11 N -0.89 -47.38 13.96 21.66 0.30 -47.07 16 12 Si 0.92 36.70 24.83 68.60 1.70 38.41 16 13 H -0.25 -9.53 6.71 99.48 0.67 -8.86 16 14 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 15 H -0.25 -9.34 7.10 99.48 0.71 -8.63 16 16 C 0.10 4.01 4.73 85.63 0.41 4.42 16 17 C 0.47 19.29 8.40 71.23 0.60 19.89 16 18 O -0.54 -26.19 17.19 21.95 0.38 -25.81 16 19 O -0.51 -15.60 13.42 -51.39 -0.69 -16.29 16 20 C -0.12 -3.16 4.79 -19.81 -0.09 -3.25 16 21 C -0.05 -1.17 8.77 22.26 0.20 -0.97 16 22 C -0.15 -2.82 10.03 22.32 0.22 -2.59 16 23 C 0.11 2.43 7.30 22.37 0.16 2.59 16 24 F -0.14 -2.88 17.27 44.97 0.78 -2.11 16 25 C -0.19 -4.26 10.01 22.36 0.22 -4.03 16 26 C 0.11 2.99 7.25 22.37 0.16 3.15 16 27 F -0.14 -4.28 16.20 44.97 0.73 -3.55 16 28 H 0.07 1.73 7.61 -2.39 -0.02 1.71 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.86 6.25 -2.39 -0.01 1.85 16 31 H 0.11 3.64 7.26 -2.39 -0.02 3.63 16 32 H 0.08 2.98 7.86 -2.39 -0.02 2.96 16 33 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 34 H 0.11 4.27 3.11 -2.39 -0.01 4.26 16 35 H 0.13 4.84 7.49 -2.38 -0.02 4.82 16 36 H 0.42 8.76 9.10 -74.06 -0.67 8.09 16 37 H 0.16 2.96 7.18 -2.91 -0.02 2.94 16 38 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 39 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -65.51 339.39 6.94 -58.56 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.42 Total: 28.95 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 4.43 Total: 18.94 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -0.76 Total: -69.33 kcal Atomic # 8 Polarization: -69.52 SS G_CDS: -0.35 Total: -69.88 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 1.50 Total: -5.66 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 1.70 Total: 38.41 kcal Total: -65.51 6.94 -58.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833516463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.903 kcal (2) G-P(sol) polarization free energy of solvation -65.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds