Wall clock time and date at job start Tue Mar 31 2020 15:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.46815 * 2 1 4 4 C 1.53003 * 109.47085 * 119.99425 * 2 1 3 5 5 C 1.50707 * 109.47274 * 295.00393 * 4 2 1 6 6 O 1.21295 * 119.99505 * 0.27085 * 5 4 2 7 7 N 1.34776 * 120.00126 * 179.97438 * 5 4 2 8 8 C 1.37099 * 119.99983 * 180.02562 * 7 5 4 9 9 H 1.07999 * 119.99844 * 16.50081 * 8 7 5 10 10 C 1.38950 * 119.99790 * 196.50782 * 8 7 5 11 11 N 1.31414 * 120.00248 * 21.65359 * 10 8 7 12 12 Si 1.86796 * 119.99875 * 201.65345 * 10 8 7 13 13 H 1.48503 * 109.47055 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47356 * 119.99838 * 12 10 8 15 15 H 1.48502 * 109.47200 * 240.00019 * 12 10 8 16 16 C 1.46505 * 119.99844 * 359.97438 * 7 5 4 17 17 C 1.50695 * 109.46808 * 84.06843 * 16 7 5 18 18 O 1.20826 * 120.00643 * 359.97438 * 17 16 7 19 19 O 1.34232 * 119.99897 * 179.97438 * 17 16 7 20 20 C 1.50693 * 109.47704 * 239.99854 * 2 1 3 21 21 C 1.38241 * 119.98468 * 299.99935 * 20 2 1 22 22 C 1.38186 * 120.05033 * 180.02562 * 21 20 2 23 23 C 1.38492 * 120.02268 * 359.97438 * 22 21 20 24 24 F 1.35102 * 120.01178 * 179.97438 * 23 22 21 25 25 C 1.38392 * 119.97933 * 0.02562 * 23 22 21 26 26 C 1.38446 * 119.99040 * 119.72351 * 20 2 1 27 27 F 1.35096 * 120.01433 * 0.02562 * 26 20 2 28 28 H 1.08998 * 109.47307 * 299.99918 * 1 2 3 29 29 H 1.08993 * 109.47162 * 60.00681 * 1 2 3 30 30 H 1.08998 * 109.46855 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47279 * 175.00694 * 4 2 1 32 32 H 1.08996 * 109.47364 * 54.99997 * 4 2 1 33 33 H 0.96994 * 120.00022 * 180.02562 * 11 10 8 34 34 H 1.08993 * 109.46740 * 204.06854 * 16 7 5 35 35 H 1.09001 * 109.47013 * 324.07013 * 16 7 5 36 36 H 0.96697 * 117.00298 * 179.97438 * 19 17 16 37 37 H 1.08005 * 119.97158 * 359.97438 * 21 20 2 38 38 H 1.07996 * 119.98536 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.02857 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6412 0.0572 2.4767 6 8 1.0069 1.0849 2.3635 7 7 1.9843 -0.3916 3.7003 8 6 1.6211 0.3162 4.8168 9 1 0.8503 1.0698 4.7514 10 6 2.2448 0.0641 6.0326 11 7 3.4282 -0.5068 6.0581 12 14 1.4012 0.5368 7.6308 13 1 0.0872 1.1604 7.3313 14 1 1.1957 -0.6777 8.4601 15 1 2.2504 1.5041 8.3715 16 6 2.7444 -1.6365 3.8373 17 6 4.2139 -1.3490 3.6673 18 8 4.5880 -0.2203 3.4531 19 8 5.1074 -2.3470 3.7537 20 6 2.0324 -0.7104 -1.2303 21 6 1.6984 -2.0339 -1.4488 22 6 2.1588 -2.6868 -2.5763 23 6 2.9552 -2.0155 -3.4891 24 9 3.4057 -2.6542 -4.5911 25 6 3.2903 -0.6905 -3.2715 26 6 2.8237 -0.0357 -2.1444 27 9 3.1458 1.2592 -1.9332 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1264 -0.7993 1.2058 32 1 1.6054 -1.7197 1.2954 33 1 3.8634 -0.6831 6.9068 34 1 2.5694 -2.0621 4.8253 35 1 2.4221 -2.3449 3.0742 36 1 6.0386 -2.1139 3.6373 37 1 1.0777 -2.5583 -0.7372 38 1 1.8976 -3.7209 -2.7457 39 1 3.9109 -0.1661 -3.9830 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833516464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:34 Heat of formation + Delta-G solvation = -185.756388 kcal Electronic energy + Delta-G solvation = -28319.364937 eV Core-core repulsion = 23863.412929 eV Total energy + Delta-G solvation = -4455.952008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.14296 -48.99211 -39.75410 -39.17541 -38.18484 -35.55417 -34.84349 -34.20688 -31.83198 -30.94194 -29.47249 -27.87085 -27.45598 -24.70318 -23.79710 -22.96728 -21.21271 -20.58147 -18.70369 -18.34013 -17.32124 -17.22382 -16.94407 -16.49653 -16.06253 -15.86770 -15.72789 -15.36420 -15.33681 -14.69712 -14.51423 -14.46233 -14.34108 -14.08696 -13.95374 -13.11459 -12.92139 -12.86383 -12.54609 -12.07225 -11.95674 -11.88666 -11.74156 -11.57780 -11.48960 -11.04313 -10.85795 -10.81748 -10.55461 -10.46043 -10.36572 -10.27018 -9.67042 -9.19902 -9.07923 -8.69260 -8.48056 -7.93979 -6.48945 -3.92702 0.83724 0.87455 3.09852 3.22021 3.23417 3.29578 3.40318 3.60376 3.75144 4.02398 4.20717 4.31520 4.43679 4.48751 4.68767 4.82640 4.99782 5.03264 5.26877 5.39802 5.47881 5.63466 5.72031 5.75323 5.81746 5.87841 5.93413 5.95640 6.02901 6.17182 6.30448 6.40158 6.53252 6.58090 6.65140 6.78725 7.44853 7.51599 7.94819 8.32801 8.98196 9.05536 9.27043 9.80293 10.60129 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.018759 B = 0.003532 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.220439 B = 7926.412152 C = 8571.602696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.035 4.035 3 H 0.092 0.908 4 C -0.126 4.126 5 C 0.463 3.537 6 O -0.570 6.570 7 N -0.432 5.432 8 C -0.305 4.305 9 H 0.109 0.891 10 C 0.029 3.971 11 N -0.882 5.882 12 Si 0.927 3.073 13 H -0.267 1.267 14 H -0.280 1.280 15 H -0.283 1.283 16 C 0.146 3.854 17 C 0.487 3.513 18 O -0.502 6.502 19 O -0.535 6.535 20 C -0.110 4.110 21 C -0.059 4.059 22 C -0.161 4.161 23 C 0.117 3.883 24 F -0.136 7.136 25 C -0.191 4.191 26 C 0.132 3.868 27 F -0.126 7.126 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.270 0.730 34 H 0.128 0.872 35 H 0.077 0.923 36 H 0.392 0.608 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.830 -8.559 -13.281 15.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.054 4.054 3 H 0.111 0.889 4 C -0.167 4.167 5 C 0.252 3.748 6 O -0.454 6.454 7 N -0.152 5.152 8 C -0.432 4.432 9 H 0.127 0.873 10 C -0.174 4.174 11 N -0.522 5.522 12 Si 0.754 3.246 13 H -0.191 1.191 14 H -0.206 1.206 15 H -0.209 1.209 16 C 0.019 3.981 17 C 0.328 3.672 18 O -0.387 6.387 19 O -0.346 6.346 20 C -0.111 4.111 21 C -0.077 4.077 22 C -0.180 4.180 23 C 0.097 3.903 24 F -0.115 7.115 25 C -0.211 4.211 26 C 0.113 3.887 27 F -0.104 7.104 28 H 0.109 0.891 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.146 0.854 35 H 0.095 0.905 36 H 0.249 0.751 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.320 -7.831 -13.215 15.418 hybrid contribution 0.999 0.407 0.671 1.270 sum -0.321 -7.424 -12.544 14.580 Atomic orbital electron populations 1.21945 0.93155 1.01492 1.03561 1.19821 0.97101 0.99749 0.88731 0.88936 1.21670 1.01855 0.99528 0.93615 1.19927 0.84654 0.86456 0.83731 1.90495 1.43707 1.25518 1.85638 1.43472 1.46429 1.19835 1.05475 1.19762 1.18884 1.20150 0.84399 0.87342 1.25229 0.94538 0.97644 0.99964 1.69810 1.11610 1.43645 1.27130 0.85842 0.79623 0.78164 0.80960 1.19132 1.20559 1.20913 1.20676 0.84412 0.88165 1.04861 1.23867 0.89764 0.82491 0.71117 1.90625 1.80464 1.23127 1.44530 1.84520 1.20951 1.43207 1.85928 1.20262 0.98443 0.95084 0.97290 1.20817 0.97682 0.92917 0.96239 1.21182 1.00317 1.01460 0.95034 1.17263 0.97732 0.90351 0.84910 1.91514 1.87484 1.81557 1.50902 1.20989 1.05753 0.94618 0.99742 1.17199 0.97554 0.79305 0.94681 1.91541 1.90790 1.33528 1.94569 0.89112 0.93337 0.93311 0.90376 0.90169 0.91948 0.85401 0.90503 0.75150 0.83739 0.84092 0.83649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.75 37.16 0.32 -1.81 16 2 C -0.04 -0.56 2.19 -91.77 -0.20 -0.76 16 3 H 0.09 1.72 6.94 -51.92 -0.36 1.36 16 4 C -0.13 -2.19 3.53 -27.88 -0.10 -2.29 16 5 C 0.46 10.63 7.14 -10.98 -0.08 10.55 16 6 O -0.57 -14.72 13.60 5.54 0.08 -14.64 16 7 N -0.43 -10.45 2.18 -116.09 -0.25 -10.70 16 8 C -0.30 -8.14 9.34 -14.93 -0.14 -8.28 16 9 H 0.11 3.04 7.37 -52.49 -0.39 2.66 16 10 C 0.03 0.73 4.87 -17.47 -0.09 0.65 16 11 N -0.88 -22.74 9.29 55.50 0.52 -22.23 16 12 Si 0.93 20.09 29.60 -169.99 -5.03 15.06 16 13 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 14 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 C 0.15 3.02 4.97 -5.19 -0.03 3.00 16 17 C 0.49 10.51 5.86 36.00 0.21 10.72 16 18 O -0.50 -12.89 16.79 -18.75 -0.31 -13.20 16 19 O -0.53 -9.33 13.42 -39.26 -0.53 -9.86 16 20 C -0.11 -1.45 4.79 -104.55 -0.50 -1.95 16 21 C -0.06 -0.62 8.76 -39.60 -0.35 -0.97 16 22 C -0.16 -1.56 10.03 -39.51 -0.40 -1.96 16 23 C 0.12 1.27 7.30 -39.43 -0.29 0.98 16 24 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 25 C -0.19 -2.20 10.01 -39.45 -0.39 -2.59 16 26 C 0.13 1.78 7.24 -39.43 -0.29 1.49 16 27 F -0.13 -1.91 16.19 2.25 0.04 -1.87 16 28 H 0.09 1.63 5.94 -51.93 -0.31 1.32 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 31 H 0.08 1.41 7.52 -51.93 -0.39 1.02 16 32 H 0.08 1.13 6.84 -51.93 -0.36 0.78 16 33 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 34 H 0.13 2.77 6.37 -51.93 -0.33 2.44 16 35 H 0.08 1.25 6.69 -51.93 -0.35 0.91 16 36 H 0.39 5.28 9.10 45.56 0.41 5.70 16 37 H 0.14 1.25 7.16 -52.48 -0.38 0.88 16 38 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 338.31 15.07 5.10 5.10 Total: -1.00 -32.42 338.31 -5.89 -38.31 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -3.23 Total: 8.72 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -2.30 Total: 6.78 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.26 Total: -32.93 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -0.77 Total: -37.71 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.08 Total: -3.33 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.42 -5.89 -38.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833516464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.446 kcal (2) G-P(sol) polarization free energy of solvation -32.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds