Wall clock time and date at job start Tue Mar 31 2020 15:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.46815 * 2 1 4 4 C 1.53003 * 109.47085 * 119.99425 * 2 1 3 5 5 C 1.50707 * 109.47274 * 295.00393 * 4 2 1 6 6 O 1.21295 * 119.99505 * 0.27085 * 5 4 2 7 7 N 1.34776 * 120.00126 * 179.97438 * 5 4 2 8 8 C 1.37099 * 119.99983 * 180.02562 * 7 5 4 9 9 H 1.07999 * 119.99844 * 16.50081 * 8 7 5 10 10 C 1.38950 * 119.99790 * 196.50782 * 8 7 5 11 11 N 1.31414 * 120.00248 * 21.65359 * 10 8 7 12 12 Si 1.86796 * 119.99875 * 201.65345 * 10 8 7 13 13 H 1.48503 * 109.47055 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47356 * 119.99838 * 12 10 8 15 15 H 1.48502 * 109.47200 * 240.00019 * 12 10 8 16 16 C 1.46505 * 119.99844 * 359.97438 * 7 5 4 17 17 C 1.50695 * 109.46808 * 84.06843 * 16 7 5 18 18 O 1.20826 * 120.00643 * 359.97438 * 17 16 7 19 19 O 1.34232 * 119.99897 * 179.97438 * 17 16 7 20 20 C 1.50693 * 109.47704 * 239.99854 * 2 1 3 21 21 C 1.38241 * 119.98468 * 299.99935 * 20 2 1 22 22 C 1.38186 * 120.05033 * 180.02562 * 21 20 2 23 23 C 1.38492 * 120.02268 * 359.97438 * 22 21 20 24 24 F 1.35102 * 120.01178 * 179.97438 * 23 22 21 25 25 C 1.38392 * 119.97933 * 0.02562 * 23 22 21 26 26 C 1.38446 * 119.99040 * 119.72351 * 20 2 1 27 27 F 1.35096 * 120.01433 * 0.02562 * 26 20 2 28 28 H 1.08998 * 109.47307 * 299.99918 * 1 2 3 29 29 H 1.08993 * 109.47162 * 60.00681 * 1 2 3 30 30 H 1.08998 * 109.46855 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47279 * 175.00694 * 4 2 1 32 32 H 1.08996 * 109.47364 * 54.99997 * 4 2 1 33 33 H 0.96994 * 120.00022 * 180.02562 * 11 10 8 34 34 H 1.08993 * 109.46740 * 204.06854 * 16 7 5 35 35 H 1.09001 * 109.47013 * 324.07013 * 16 7 5 36 36 H 0.96697 * 117.00298 * 179.97438 * 19 17 16 37 37 H 1.08005 * 119.97158 * 359.97438 * 21 20 2 38 38 H 1.07996 * 119.98536 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.02857 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6412 0.0572 2.4767 6 8 1.0069 1.0849 2.3635 7 7 1.9843 -0.3916 3.7003 8 6 1.6211 0.3162 4.8168 9 1 0.8503 1.0698 4.7514 10 6 2.2448 0.0641 6.0326 11 7 3.4282 -0.5068 6.0581 12 14 1.4012 0.5368 7.6308 13 1 0.0872 1.1604 7.3313 14 1 1.1957 -0.6777 8.4601 15 1 2.2504 1.5041 8.3715 16 6 2.7444 -1.6365 3.8373 17 6 4.2139 -1.3490 3.6673 18 8 4.5880 -0.2203 3.4531 19 8 5.1074 -2.3470 3.7537 20 6 2.0324 -0.7104 -1.2303 21 6 1.6984 -2.0339 -1.4488 22 6 2.1588 -2.6868 -2.5763 23 6 2.9552 -2.0155 -3.4891 24 9 3.4057 -2.6542 -4.5911 25 6 3.2903 -0.6905 -3.2715 26 6 2.8237 -0.0357 -2.1444 27 9 3.1458 1.2592 -1.9332 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1264 -0.7993 1.2058 32 1 1.6054 -1.7197 1.2954 33 1 3.8634 -0.6831 6.9068 34 1 2.5694 -2.0621 4.8253 35 1 2.4221 -2.3449 3.0742 36 1 6.0386 -2.1139 3.6373 37 1 1.0777 -2.5583 -0.7372 38 1 1.8976 -3.7209 -2.7457 39 1 3.9109 -0.1661 -3.9830 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833516464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:33 Heat of formation + Delta-G solvation = -205.584545 kcal Electronic energy + Delta-G solvation = -28320.224750 eV Core-core repulsion = 23863.412929 eV Total energy + Delta-G solvation = -4456.811821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.06339 -49.98098 -41.33301 -40.42168 -39.69830 -37.15784 -36.44197 -35.71145 -33.73927 -31.79858 -30.58380 -29.50039 -28.90876 -26.44136 -24.83197 -23.93675 -22.83298 -21.85298 -20.27171 -19.28465 -18.99068 -18.68116 -18.35908 -18.00213 -17.38516 -17.00681 -16.77378 -16.74532 -16.33357 -16.22150 -16.01064 -15.89766 -15.78721 -15.45749 -15.02392 -14.50430 -14.35379 -14.07161 -13.72078 -13.60809 -13.46870 -13.38016 -13.02393 -12.88299 -12.70281 -12.62703 -12.37478 -12.17230 -12.12554 -12.02547 -11.98864 -11.68718 -11.47461 -10.93751 -10.33595 -10.05021 -9.81618 -9.60054 -8.41949 -5.92445 -0.06661 0.02302 1.36215 1.44099 1.57756 1.72217 1.91045 2.27123 2.36703 2.56728 2.86019 2.95779 3.12926 3.41437 3.54508 3.57739 3.86671 4.02619 4.09025 4.09598 4.21894 4.30497 4.50359 4.68326 4.70144 4.79217 4.86896 4.91337 4.94684 4.95577 5.03711 5.12244 5.13001 5.41698 5.47673 5.53241 5.78608 5.96989 6.05201 6.42344 7.14793 7.33610 7.48217 7.98023 8.65013 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.018759 B = 0.003532 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.220439 B = 7926.412152 C = 8571.602696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.029 4.029 3 H 0.051 0.949 4 C -0.113 4.113 5 C 0.452 3.548 6 O -0.612 6.612 7 N -0.447 5.447 8 C -0.339 4.339 9 H 0.079 0.921 10 C -0.001 4.001 11 N -0.895 5.895 12 Si 0.989 3.011 13 H -0.273 1.273 14 H -0.260 1.260 15 H -0.288 1.288 16 C 0.142 3.858 17 C 0.494 3.506 18 O -0.552 6.552 19 O -0.518 6.518 20 C -0.120 4.120 21 C -0.051 4.051 22 C -0.144 4.144 23 C 0.115 3.885 24 F -0.135 7.135 25 C -0.191 4.191 26 C 0.105 3.895 27 F -0.147 7.147 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.273 0.727 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.412 0.588 37 H 0.174 0.826 38 H 0.176 0.824 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.017 -11.936 -14.016 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.048 4.048 3 H 0.070 0.930 4 C -0.153 4.153 5 C 0.243 3.757 6 O -0.498 6.498 7 N -0.167 5.167 8 C -0.466 4.466 9 H 0.097 0.903 10 C -0.202 4.202 11 N -0.534 5.534 12 Si 0.813 3.187 13 H -0.197 1.197 14 H -0.184 1.184 15 H -0.215 1.215 16 C 0.017 3.983 17 C 0.337 3.663 18 O -0.441 6.441 19 O -0.330 6.330 20 C -0.121 4.121 21 C -0.069 4.069 22 C -0.162 4.162 23 C 0.096 3.904 24 F -0.114 7.114 25 C -0.211 4.211 26 C 0.086 3.914 27 F -0.125 7.125 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.142 0.858 33 H 0.083 0.917 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.272 0.728 37 H 0.191 0.809 38 H 0.193 0.807 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.473 -11.264 -13.956 17.995 hybrid contribution 1.130 1.422 0.834 1.999 sum -0.343 -9.842 -13.122 16.407 Atomic orbital electron populations 1.21858 0.92390 1.03171 1.02116 1.19620 0.97727 0.97859 0.89642 0.93050 1.21631 1.01655 1.00816 0.91200 1.20932 0.83365 0.86445 0.84982 1.90471 1.45278 1.27542 1.86462 1.43640 1.46976 1.20799 1.05249 1.19649 1.19429 1.21141 0.86386 0.90316 1.25907 0.94805 0.97372 1.02112 1.69891 1.11977 1.43736 1.27811 0.84954 0.78094 0.78297 0.77374 1.19705 1.18438 1.21455 1.20875 0.83846 0.87494 1.06107 1.23973 0.90546 0.82084 0.69720 1.90618 1.81325 1.25211 1.46991 1.84450 1.22143 1.41429 1.85011 1.20075 0.99508 0.96281 0.96218 1.21088 0.97316 0.91474 0.96985 1.21518 0.98379 1.02704 0.93600 1.17406 0.97806 0.90075 0.85163 1.91523 1.87513 1.81401 1.50960 1.21083 1.05598 0.95170 0.99205 1.17483 0.99013 0.78885 0.96016 1.91488 1.91186 1.35021 1.94829 0.92839 0.92447 0.89963 0.90844 0.85799 0.91699 0.86302 0.85498 0.72847 0.80914 0.80702 0.82629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 8.75 71.98 0.63 -3.38 16 2 C -0.03 -0.93 2.19 -11.54 -0.03 -0.96 16 3 H 0.05 2.03 6.94 -2.38 -0.02 2.01 16 4 C -0.11 -3.81 3.53 29.85 0.11 -3.70 16 5 C 0.45 21.19 7.14 87.66 0.63 21.81 16 6 O -0.61 -33.33 13.60 -3.08 -0.04 -33.37 16 7 N -0.45 -21.87 2.18 -639.59 -1.39 -23.26 16 8 C -0.34 -18.65 9.34 84.04 0.79 -17.87 16 9 H 0.08 4.69 7.37 -2.91 -0.02 4.67 16 10 C 0.00 -0.04 4.87 84.93 0.41 0.37 16 11 N -0.89 -45.99 9.29 21.66 0.20 -45.78 16 12 Si 0.99 41.54 29.60 68.60 2.03 43.57 16 13 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 14 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 15 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 16 C 0.14 5.72 4.97 85.63 0.43 6.14 16 17 C 0.49 20.76 5.86 71.23 0.42 21.18 16 18 O -0.55 -28.56 16.79 21.96 0.37 -28.19 16 19 O -0.52 -16.81 13.42 -51.44 -0.69 -17.50 16 20 C -0.12 -2.98 4.79 -19.82 -0.09 -3.07 16 21 C -0.05 -0.87 8.76 22.26 0.19 -0.67 16 22 C -0.14 -2.12 10.03 22.32 0.22 -1.90 16 23 C 0.11 2.15 7.30 22.37 0.16 2.31 16 24 F -0.14 -2.57 17.27 44.97 0.78 -1.79 16 25 C -0.19 -4.11 10.01 22.36 0.22 -3.89 16 26 C 0.11 2.80 7.24 22.37 0.16 2.96 16 27 F -0.15 -4.68 16.19 44.97 0.73 -3.95 16 28 H 0.05 1.97 5.94 -2.39 -0.01 1.96 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.78 7.39 -2.39 -0.02 1.76 16 31 H 0.07 2.57 7.52 -2.38 -0.02 2.56 16 32 H 0.12 3.01 6.84 -2.39 -0.02 2.99 16 33 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 34 H 0.12 5.01 6.37 -2.39 -0.02 5.00 16 35 H 0.13 3.70 6.69 -2.39 -0.02 3.68 16 36 H 0.41 10.11 9.10 -74.06 -0.67 9.44 16 37 H 0.17 1.96 7.16 -2.91 -0.02 1.94 16 38 H 0.18 1.46 8.06 -2.91 -0.02 1.43 16 39 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -75.08 338.31 6.68 -68.40 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.45 Total: 22.55 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 4.25 Total: 19.34 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -1.19 Total: -69.05 kcal Atomic # 8 Polarization: -78.70 SS G_CDS: -0.36 Total: -79.06 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 1.50 Total: -5.74 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -75.08 6.68 -68.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833516464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.189 kcal (2) G-P(sol) polarization free energy of solvation -75.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds