Wall clock time and date at job start Tue Mar 31 2020 14:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47308 * 2 1 4 4 C 1.50707 * 109.47210 * 240.00166 * 2 1 3 5 5 H 1.07996 * 119.99442 * 240.00229 * 4 2 1 6 6 C 1.37868 * 119.99865 * 59.99812 * 4 2 1 7 7 N 1.31519 * 120.00310 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00002 * 180.02562 * 6 4 2 9 9 H 1.48489 * 109.47287 * 89.99923 * 8 6 4 10 10 H 1.48502 * 109.46968 * 210.00271 * 8 6 4 11 11 H 1.48507 * 109.46692 * 329.99637 * 8 6 4 12 12 C 1.52998 * 109.47164 * 119.99996 * 2 1 3 13 13 N 1.46499 * 109.47428 * 299.99691 * 12 2 1 14 14 S 1.65593 * 120.00303 * 164.99968 * 13 12 2 15 15 O 1.42101 * 106.40105 * 311.46316 * 14 13 12 16 16 O 1.42094 * 106.40248 * 178.54349 * 14 13 12 17 17 C 1.76198 * 107.21867 * 65.00335 * 14 13 12 18 18 C 1.32570 * 120.00172 * 115.00208 * 17 14 13 19 19 C 1.47806 * 120.00345 * 180.02562 * 18 17 14 20 20 C 1.39547 * 120.11669 * 179.97438 * 19 18 17 21 21 C 1.37928 * 119.88017 * 179.97438 * 20 19 18 22 22 C 1.38572 * 120.11454 * 0.27983 * 21 20 19 23 23 F 1.35102 * 119.87948 * 179.69584 * 22 21 20 24 24 C 1.38570 * 120.23475 * 359.44567 * 22 21 20 25 25 C 1.37929 * 120.11795 * 0.54989 * 24 22 21 26 26 H 1.09003 * 109.47510 * 300.00027 * 1 2 3 27 27 H 1.09001 * 109.47724 * 59.99854 * 1 2 3 28 28 H 1.09000 * 109.47200 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47027 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.46847 * 300.00154 * 3 2 1 31 31 H 1.08997 * 109.46923 * 59.99982 * 3 2 1 32 32 H 0.97004 * 120.00299 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.46911 * 180.02562 * 12 2 1 34 34 H 1.09002 * 109.47278 * 60.00408 * 12 2 1 35 35 H 0.97003 * 119.99181 * 345.00336 * 13 12 2 36 36 H 1.07998 * 120.00057 * 294.99985 * 17 14 13 37 37 H 1.08002 * 120.00235 * 359.97438 * 18 17 14 38 38 H 1.08000 * 120.06019 * 359.95465 * 20 19 18 39 39 H 1.08002 * 119.93790 * 179.97438 * 21 20 19 40 40 H 1.08002 * 119.94463 * 180.28246 * 24 22 21 41 41 H 1.08003 * 120.05708 * 179.75128 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3428 -2.1616 -4.4119 10 1 2.4865 -0.1412 -5.1123 11 1 3.6294 -1.7582 -3.7122 12 6 2.0399 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 16 1.6257 -0.7781 3.9212 15 8 1.0839 -2.0792 3.7397 16 8 1.1156 0.1511 4.8676 17 6 3.3302 -0.9986 4.3094 18 6 3.8618 -0.3636 5.3445 19 6 5.2918 -0.5481 5.6698 20 6 5.8540 0.1196 6.7586 21 6 7.1888 -0.0566 7.0581 22 6 7.9726 -0.8903 6.2765 23 9 9.2810 -1.0545 6.5704 24 6 7.4179 -1.5600 5.1976 25 6 6.0842 -1.3910 4.8894 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 0.7088 1.1615 -3.4844 33 1 3.1300 -0.7208 1.2494 34 1 1.6767 -1.7489 1.2492 35 1 1.1851 0.8645 2.3729 36 1 3.9418 -1.6511 3.7040 37 1 3.2503 0.2892 5.9498 38 1 5.2451 0.7733 7.3655 39 1 7.6250 0.4600 7.9003 40 1 8.0321 -2.2121 4.5943 41 1 5.6538 -1.9103 4.0459 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841541945.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:53 Heat of formation + Delta-G solvation = -101.815486 kcal Electronic energy + Delta-G solvation = -24986.646586 eV Core-core repulsion = 21100.547705 eV Total energy + Delta-G solvation = -3886.098881 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.02382 -40.22734 -38.62392 -38.14835 -36.89320 -35.37356 -34.88980 -32.30850 -32.28773 -30.34619 -27.48305 -27.36192 -26.20114 -24.95433 -24.02032 -21.80638 -20.72977 -19.95793 -19.09731 -18.69486 -18.16338 -17.60095 -17.19895 -16.91580 -16.69974 -16.68456 -16.42588 -15.56147 -15.42125 -15.02377 -14.81632 -14.62657 -14.38392 -14.00558 -13.84564 -13.56842 -13.40907 -13.34463 -13.24023 -13.12787 -13.05426 -12.87057 -12.71692 -12.48360 -12.23661 -12.06910 -12.04060 -11.85138 -11.70451 -11.42309 -11.06895 -10.63075 -10.37656 -10.21545 -10.16426 -9.51021 -7.96050 -6.12167 -0.73488 -0.43321 0.17498 0.86634 1.46135 1.49491 1.56371 2.18380 2.50366 2.58629 2.76456 3.13558 3.27886 3.43123 3.56230 3.71821 3.84284 4.03187 4.17063 4.24291 4.29372 4.62056 4.75154 4.79758 4.81218 4.86436 4.90458 5.00994 5.04485 5.11321 5.14385 5.16379 5.28645 5.30478 5.48254 5.56448 5.73759 5.74842 5.75630 6.15261 6.23587 6.32776 6.50000 6.95430 7.55778 9.02623 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013264 B = 0.003020 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.527695 B = 9268.268874 C =10705.016058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.053 3.947 3 C -0.124 4.124 4 C -0.524 4.524 5 H 0.056 0.944 6 C 0.024 3.976 7 N -0.903 5.903 8 Si 0.944 3.056 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.269 1.269 12 C 0.135 3.865 13 N -1.107 6.107 14 S 2.702 3.298 15 O -0.999 6.999 16 O -0.989 6.989 17 C -0.749 4.749 18 C 0.061 3.939 19 C -0.118 4.118 20 C -0.055 4.055 21 C -0.159 4.159 22 C 0.102 3.898 23 F -0.143 7.143 24 C -0.165 4.165 25 C -0.070 4.070 26 H 0.032 0.968 27 H 0.058 0.942 28 H 0.018 0.982 29 H 0.028 0.972 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.257 0.743 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.420 0.580 36 H 0.172 0.828 37 H 0.161 0.839 38 H 0.171 0.829 39 H 0.164 0.836 40 H 0.152 0.848 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.566 -0.131 18.680 21.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.051 3.949 3 C -0.182 4.182 4 C -0.563 4.563 5 H 0.074 0.926 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.771 3.229 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.194 1.194 12 C 0.009 3.991 13 N -0.869 5.869 14 S 2.795 3.205 15 O -0.989 6.989 16 O -0.980 6.980 17 C -0.858 4.858 18 C 0.041 3.959 19 C -0.120 4.120 20 C -0.072 4.072 21 C -0.177 4.177 22 C 0.082 3.918 23 F -0.122 7.122 24 C -0.184 4.184 25 C -0.088 4.088 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.257 0.743 36 H 0.189 0.811 37 H 0.179 0.821 38 H 0.188 0.812 39 H 0.181 0.819 40 H 0.170 0.830 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.892 -0.477 19.048 21.948 hybrid contribution 1.026 -0.215 -1.475 1.810 sum 11.918 -0.692 17.573 21.245 Atomic orbital electron populations 1.21732 0.98233 0.98579 1.00003 1.18302 0.92570 0.93183 0.90819 1.21691 0.98432 0.97975 1.00099 1.21396 1.31420 1.12178 0.91344 0.92592 1.25504 0.95312 0.95579 1.01167 1.69948 1.37365 1.23579 1.23339 0.85779 0.78828 0.78310 0.79975 1.20945 1.21430 1.19352 1.21405 0.98083 0.95361 0.84248 1.55299 1.78619 1.30515 1.22493 1.01122 0.74982 0.72542 0.71815 1.93550 1.77960 1.41482 1.85923 1.93522 1.79592 1.63962 1.60924 1.33621 1.26976 1.14699 1.10488 1.22224 0.93095 0.89229 0.91321 1.19375 0.93450 1.00829 0.98333 1.21598 0.94411 0.96541 0.94678 1.21414 0.94358 1.00213 1.01737 1.18184 0.78279 0.98732 0.96572 1.91507 1.33551 1.94238 1.92892 1.21323 0.96372 1.02459 0.98213 1.21524 0.92781 0.95806 0.98692 0.94953 0.92310 0.96321 0.95244 0.92494 0.94599 0.93334 0.91335 0.92200 0.74285 0.81071 0.82115 0.81196 0.81858 0.83007 0.83610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.08 71.98 0.58 -5.24 16 2 C 0.05 2.35 0.51 -52.93 -0.03 2.32 16 3 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 4 C -0.52 -26.37 8.01 25.60 0.21 -26.17 16 5 H 0.06 2.76 7.74 -2.91 -0.02 2.73 16 6 C 0.02 1.22 5.15 84.65 0.44 1.66 16 7 N -0.90 -48.16 9.35 21.44 0.20 -47.96 16 8 Si 0.94 41.55 29.54 68.60 2.03 43.58 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 12 C 0.13 4.92 5.05 86.38 0.44 5.36 16 13 N -1.11 -34.16 5.33 -187.49 -1.00 -35.16 16 14 S 2.70 77.14 5.89 -56.49 -0.33 76.81 16 15 O -1.00 -36.15 17.49 -128.00 -2.24 -38.38 16 16 O -0.99 -30.14 16.89 -128.00 -2.16 -32.30 16 17 C -0.75 -16.60 9.72 66.67 0.65 -15.95 16 18 C 0.06 1.14 9.42 23.65 0.22 1.36 16 19 C -0.12 -1.99 5.87 -20.11 -0.12 -2.11 16 20 C -0.05 -0.68 9.78 22.51 0.22 -0.46 16 21 C -0.16 -2.02 10.01 22.28 0.22 -1.79 16 22 C 0.10 1.65 7.30 22.43 0.16 1.82 16 23 F -0.14 -2.58 17.26 44.97 0.78 -1.80 16 24 C -0.17 -2.66 10.01 22.28 0.22 -2.44 16 25 C -0.07 -1.20 9.40 22.51 0.21 -0.99 16 26 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 27 H 0.06 2.98 6.07 -2.39 -0.01 2.97 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 2.78 6.07 -2.39 -0.01 2.76 16 31 H 0.04 1.29 6.60 -2.39 -0.02 1.28 16 32 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.06 2.28 7.75 -2.39 -0.02 2.26 16 35 H 0.42 12.32 6.47 -96.74 -0.63 11.70 16 36 H 0.17 3.42 6.03 -2.91 -0.02 3.40 16 37 H 0.16 2.47 7.21 -2.91 -0.02 2.45 16 38 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 39 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 40 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.15 2.28 6.16 -2.91 -0.02 2.27 16 Total: -1.00 -64.66 353.69 1.71 -62.95 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.44 Total: 19.62 kcal Atomic # 6 Polarization: -51.35 SS G_CDS: 4.01 Total: -47.34 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -0.80 Total: -83.12 kcal Atomic # 8 Polarization: -66.29 SS G_CDS: -4.40 Total: -70.69 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.80 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 77.14 SS G_CDS: -0.33 Total: 76.81 kcal Total: -64.66 1.71 -62.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841541945.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.870 kcal (2) G-P(sol) polarization free energy of solvation -64.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds