Wall clock time and date at job start Tue Mar 31 2020 15:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46751 * 2 1 4 4 N 1.39926 * 125.75011 * 269.97381 * 3 2 1 5 5 C 1.30414 * 108.95716 * 179.75994 * 4 3 2 6 6 C 1.50694 * 125.97590 * 180.24521 * 5 4 3 7 7 C 1.41342 * 108.04890 * 0.40644 * 5 4 3 8 8 C 1.47297 * 126.43435 * 179.85188 * 7 5 4 9 9 O 1.21611 * 120.00465 * 269.71301 * 8 7 5 10 10 N 1.34783 * 119.99433 * 89.71920 * 8 7 5 11 11 C 1.47422 * 125.65155 * 359.96703 * 10 8 7 12 12 C 1.54907 * 104.83115 * 155.91433 * 11 10 8 13 13 C 1.55162 * 101.58039 * 37.01385 * 12 11 10 14 14 O 1.42905 * 110.71869 * 82.86050 * 13 12 11 15 15 C 1.50701 * 110.72075 * 205.95482 * 13 12 11 16 16 H 1.08000 * 119.99666 * 357.56011 * 15 13 12 17 17 C 1.37875 * 120.00020 * 177.56128 * 15 13 12 18 18 N 1.31514 * 120.00056 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00248 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47056 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47253 * 119.99841 * 19 17 15 22 22 H 1.48495 * 109.47433 * 239.99969 * 19 17 15 23 23 C 1.47488 * 125.59011 * 180.02562 * 10 8 7 24 24 C 1.34347 * 125.74652 * 90.00030 * 3 2 1 25 25 Cl 1.73601 * 126.32103 * 359.97438 * 24 3 2 26 26 H 1.08996 * 109.47869 * 299.99978 * 1 2 3 27 27 H 1.08998 * 109.47163 * 60.00551 * 1 2 3 28 28 H 1.09004 * 109.46567 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47378 * 239.99917 * 2 1 3 30 30 H 1.08998 * 109.47163 * 119.99449 * 2 1 3 31 31 H 1.09001 * 109.47047 * 270.19484 * 6 5 4 32 32 H 1.09004 * 109.47230 * 30.19201 * 6 5 4 33 33 H 1.08996 * 109.47419 * 150.19355 * 6 5 4 34 34 H 1.09000 * 110.36343 * 37.08413 * 11 10 8 35 35 H 1.08992 * 110.46306 * 274.80415 * 11 10 8 36 36 H 1.09001 * 111.00887 * 278.94185 * 12 11 10 37 37 H 1.09000 * 111.00350 * 155.08660 * 12 11 10 38 38 H 0.96696 * 114.00036 * 182.44115 * 14 13 12 39 39 H 0.97001 * 120.00180 * 180.02562 * 18 17 15 40 40 H 1.09001 * 110.03275 * 61.63889 * 23 10 8 41 41 H 1.09000 * 109.96057 * 300.32729 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2912 2.1519 -1.1356 5 6 2.7023 3.3308 -0.7588 6 6 3.0958 4.4642 -1.6706 7 6 2.7176 3.3583 0.6543 8 6 3.1187 4.4935 1.5028 9 8 4.2772 4.6112 1.8535 10 7 2.2015 5.4018 1.8908 11 6 0.7699 5.3812 1.5398 12 6 0.0746 6.1910 2.6625 13 6 1.1182 7.3068 2.9336 14 8 0.9752 8.3723 1.9920 15 6 0.9922 7.8235 4.3437 16 1 0.2194 7.4387 4.9927 17 6 1.8633 8.7874 4.8051 18 7 2.8046 9.2555 4.0149 19 14 1.7068 9.4284 6.5527 20 1 0.5763 8.7449 7.2312 21 1 2.9648 9.1577 7.2938 22 1 1.4550 10.8915 6.5226 23 6 2.4657 6.5812 2.7360 24 6 2.2798 2.1213 1.0904 25 17 2.1011 1.6175 2.7420 26 1 -0.3635 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 4.1605 4.3975 -1.8944 32 1 2.5251 4.4003 -2.5971 33 1 2.8866 5.4147 -1.1799 34 1 0.3977 4.3568 1.5249 35 1 0.6078 5.8570 0.5727 36 1 -0.0796 5.5765 3.5494 37 1 -0.8675 6.6136 2.3133 38 1 1.6282 9.0781 2.0947 39 1 3.4178 9.9334 4.3396 40 1 3.1748 7.2444 2.2405 41 1 2.8619 6.2661 3.7013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844015321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:03 Heat of formation + Delta-G solvation = -35.875513 kcal Electronic energy + Delta-G solvation = -26517.644741 eV Core-core repulsion = 22652.281487 eV Total energy + Delta-G solvation = -3865.363254 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.66387 -40.72906 -38.85327 -38.17712 -36.09166 -35.91526 -34.17871 -32.40699 -32.10341 -31.02651 -29.57071 -28.77145 -27.14292 -25.13503 -24.01022 -22.73275 -21.53780 -21.40898 -20.28956 -19.12891 -18.58479 -17.76808 -17.31657 -16.75609 -16.57125 -16.42647 -16.11921 -15.69874 -15.21554 -14.79527 -14.75044 -14.65236 -14.34658 -14.12023 -13.80608 -13.64920 -13.48771 -13.43650 -13.27288 -13.16249 -12.89814 -12.86930 -12.70347 -12.52919 -12.31640 -12.26718 -12.24167 -12.08366 -11.89072 -11.21508 -11.12748 -10.63468 -10.38063 -10.26857 -9.81363 -9.61236 -8.25068 -6.40372 0.11386 0.23905 1.13210 1.39027 1.41599 1.44429 1.45459 1.55195 2.14152 2.39916 3.01722 3.15891 3.66307 3.70534 3.79937 3.98824 4.00360 4.09066 4.18195 4.24554 4.27451 4.40217 4.59135 4.64566 4.67675 4.70216 4.71807 4.72788 4.92484 5.02458 5.11432 5.18113 5.22383 5.27062 5.38109 5.51320 5.52452 5.76421 6.06602 6.27292 6.57855 6.67830 7.10021 7.30927 7.39102 8.81387 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.018607 B = 0.003797 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.430178 B = 7372.897124 C = 7818.422896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.109 3.891 3 N -0.340 5.340 4 N -0.276 5.276 5 C 0.115 3.885 6 C -0.077 4.077 7 C -0.272 4.272 8 C 0.604 3.396 9 O -0.586 6.586 10 N -0.601 5.601 11 C 0.116 3.884 12 C -0.110 4.110 13 C 0.236 3.764 14 O -0.586 6.586 15 C -0.557 4.557 16 H 0.067 0.933 17 C 0.028 3.972 18 N -0.915 5.915 19 Si 0.961 3.039 20 H -0.265 1.265 21 H -0.284 1.284 22 H -0.277 1.277 23 C 0.122 3.878 24 C 0.158 3.842 25 Cl 0.021 6.979 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.377 0.623 39 H 0.270 0.730 40 H 0.037 0.963 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.696 -18.119 -9.032 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.122 5.122 4 N -0.099 5.099 5 C -0.051 4.051 6 C -0.135 4.135 7 C -0.288 4.288 8 C 0.392 3.608 9 O -0.466 6.466 10 N -0.332 5.332 11 C -0.006 4.006 12 C -0.148 4.148 13 C 0.196 3.804 14 O -0.395 6.395 15 C -0.595 4.595 16 H 0.085 0.915 17 C -0.173 4.173 18 N -0.555 5.555 19 Si 0.787 3.213 20 H -0.189 1.189 21 H -0.210 1.210 22 H -0.203 1.203 23 C -0.001 4.001 24 C 0.000 4.000 25 Cl 0.049 6.951 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.130 0.870 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.227 0.773 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.749 -19.322 -9.930 22.473 hybrid contribution 1.115 1.472 2.244 2.906 sum -4.634 -17.850 -7.687 19.980 Atomic orbital electron populations 1.22173 0.92275 1.05100 1.02717 1.22372 0.96883 0.74856 1.06840 1.48947 1.48948 1.13444 1.00863 1.77185 1.23462 1.03585 1.05678 1.22545 0.96462 0.94954 0.91111 1.20367 1.03326 0.91903 0.97919 1.19660 1.19790 0.94639 0.94715 1.17171 0.83720 0.81095 0.78864 1.90733 1.20191 1.77103 1.58609 1.48848 1.09999 1.24884 1.49458 1.22291 0.78996 1.00628 0.98728 1.22736 0.98488 0.95625 0.97949 1.19664 0.88808 0.84574 0.87382 1.86081 1.59746 1.35090 1.58572 1.21866 1.16257 1.23055 0.98289 0.91486 1.25772 0.93959 0.95939 1.01632 1.69745 1.18304 1.29668 1.37738 0.85452 0.77968 0.78188 0.79708 1.18945 1.21037 1.20283 1.22663 1.00732 0.85005 0.91658 1.21880 1.01874 0.91719 0.84552 1.98439 1.95855 1.90695 1.10130 0.92634 0.92146 0.87121 0.85959 0.86999 0.88996 0.87621 0.91247 0.89947 0.90870 0.89888 0.89058 0.77274 0.92008 0.94467 0.94523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 10.24 71.98 0.74 -1.06 16 2 C 0.11 1.46 6.97 86.38 0.60 2.06 16 3 N -0.34 -7.93 3.58 -336.05 -1.20 -9.13 16 4 N -0.28 -7.29 12.49 -46.66 -0.58 -7.88 16 5 C 0.12 3.37 7.26 43.53 0.32 3.69 16 6 C -0.08 -1.87 10.28 71.23 0.73 -1.14 16 7 C -0.27 -9.21 4.78 -20.12 -0.10 -9.30 16 8 C 0.60 25.43 7.23 86.63 0.63 26.06 16 9 O -0.59 -29.49 17.43 -4.07 -0.07 -29.57 16 10 N -0.60 -25.30 3.34 -814.65 -2.72 -28.02 16 11 C 0.12 4.06 6.67 86.85 0.58 4.64 16 12 C -0.11 -4.26 6.22 31.99 0.20 -4.06 16 13 C 0.24 11.38 0.85 -10.35 -0.01 11.37 16 14 O -0.59 -29.37 13.07 -148.98 -1.95 -31.31 16 15 C -0.56 -29.02 8.11 25.60 0.21 -28.81 16 16 H 0.07 3.41 7.77 -2.91 -0.02 3.39 16 17 C 0.03 1.45 5.27 84.65 0.45 1.90 16 18 N -0.92 -49.42 10.96 21.45 0.24 -49.18 16 19 Si 0.96 41.90 29.54 68.60 2.03 43.92 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 C 0.12 6.08 5.41 86.64 0.47 6.55 16 24 C 0.16 4.48 7.54 84.32 0.64 5.12 16 25 Cl 0.02 0.53 28.56 -2.72 -0.08 0.45 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.11 1.17 7.77 -2.39 -0.02 1.16 16 31 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.07 1.90 8.01 -2.39 -0.02 1.88 16 34 H 0.08 2.49 7.69 -2.39 -0.02 2.47 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.08 3.07 8.04 -2.39 -0.02 3.06 16 37 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 38 H 0.38 19.77 7.23 -74.06 -0.54 19.24 16 39 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 40 H 0.04 2.04 8.00 -2.39 -0.02 2.02 16 41 H 0.04 2.01 7.81 -2.39 -0.02 1.99 16 Total: -1.00 -67.28 362.90 1.63 -65.65 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.52 Total: 28.03 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 5.45 Total: 17.03 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -4.27 Total: -94.20 kcal Atomic # 8 Polarization: -58.86 SS G_CDS: -2.02 Total: -60.88 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 17 Polarization: 0.53 SS G_CDS: -0.08 Total: 0.45 kcal Total: -67.28 1.63 -65.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.775 kcal (2) G-P(sol) polarization free energy of solvation -67.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds