Wall clock time and date at job start Tue Mar 31 2020 15:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42911 * 114.00031 * 2 1 4 4 C 1.52992 * 109.47399 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47444 * 67.20455 * 4 3 2 6 6 C 1.46903 * 111.00022 * 289.77989 * 5 4 3 7 7 C 1.50695 * 109.47204 * 299.60006 * 6 5 4 8 8 H 1.08004 * 120.00353 * 3.50001 * 7 6 5 9 9 C 1.37878 * 120.00252 * 183.50354 * 7 6 5 10 10 N 1.31518 * 119.99794 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00233 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47321 * 59.99902 * 11 9 7 13 13 H 1.48507 * 109.47064 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46825 * 299.99766 * 11 9 7 15 15 C 1.46903 * 110.99746 * 53.73173 * 5 4 3 16 16 C 1.50692 * 109.46932 * 66.04781 * 15 5 4 17 17 O 1.21295 * 120.00245 * 0.02562 * 16 15 5 18 18 N 1.34778 * 119.99979 * 180.27196 * 16 15 5 19 19 C 1.40005 * 120.00164 * 175.09012 * 18 16 15 20 20 C 1.39299 * 120.47146 * 34.27540 * 19 18 16 21 21 C 1.38458 * 118.38056 * 180.02562 * 20 19 18 22 22 C 1.38428 * 119.22176 * 0.02562 * 21 20 19 23 23 Cl 1.73594 * 119.55943 * 180.02562 * 22 21 20 24 24 N 1.31942 * 120.88238 * 359.97438 * 22 21 20 25 25 C 1.31851 * 121.77696 * 359.70259 * 24 22 21 26 26 H 1.08998 * 109.47308 * 60.00298 * 1 2 3 27 27 H 1.08994 * 109.47146 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47183 * 299.99768 * 1 2 3 29 29 H 1.08999 * 109.46621 * 59.99959 * 3 2 1 30 30 H 1.08997 * 109.46530 * 300.00170 * 3 2 1 31 31 H 1.09004 * 109.47256 * 307.20732 * 4 3 2 32 32 H 1.08997 * 109.47316 * 187.20482 * 4 3 2 33 33 H 1.09006 * 109.47202 * 59.59722 * 6 5 4 34 34 H 1.08997 * 109.47313 * 179.59890 * 6 5 4 35 35 H 0.96997 * 120.00297 * 180.02562 * 10 9 7 36 36 H 1.09005 * 109.46980 * 306.04691 * 15 5 4 37 37 H 1.09001 * 109.47176 * 186.05025 * 15 5 4 38 38 H 0.96998 * 119.99857 * 355.09811 * 18 16 15 39 39 H 1.08004 * 120.81532 * 359.97438 * 20 19 18 40 40 H 1.08001 * 120.39227 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.65765 * 180.28471 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9807 0.6115 -1.2777 6 6 3.6057 -0.8053 -1.3780 7 6 4.2549 -1.5773 -0.2585 8 1 4.8371 -1.0584 0.4887 9 6 4.1058 -2.9462 -0.1879 10 7 3.3965 -3.5781 -1.0975 11 14 4.9112 -3.9032 1.1994 12 1 4.3907 -3.4180 2.5028 13 1 4.6018 -5.3479 1.0490 14 1 6.3820 -3.7047 1.1489 15 6 3.4497 1.3783 -2.4126 16 6 4.0513 2.7599 -2.4108 17 8 4.8447 3.0748 -1.5490 18 7 3.7039 3.6475 -3.3637 19 6 4.1822 4.9619 -3.3040 20 6 5.4548 5.2285 -2.8040 21 6 5.8840 6.5442 -2.7643 22 6 5.0411 7.5440 -3.2185 23 17 5.5706 9.1966 -3.1733 24 7 3.8411 7.2575 -3.6862 25 6 3.3974 6.0174 -3.7468 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8489 0.5365 0.8176 32 1 3.9781 2.1724 0.1282 33 1 2.5223 -0.9005 -1.3044 34 1 3.9410 -1.2030 -2.3358 35 1 3.2913 -4.5411 -1.0477 36 1 2.3658 1.4537 -2.3248 37 1 3.7044 0.8723 -3.3439 38 1 3.1223 3.3756 -4.0908 39 1 6.0909 4.4284 -2.4551 40 1 6.8645 6.7878 -2.3826 41 1 2.4109 5.8215 -4.1403 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851798659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:07 Heat of formation + Delta-G solvation = -45.736966 kcal Electronic energy + Delta-G solvation = -25546.517439 eV Core-core repulsion = 21680.726561 eV Total energy + Delta-G solvation = -3865.790879 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.99587 -40.63774 -39.27150 -37.69984 -37.14678 -36.02857 -34.54998 -33.42124 -31.54433 -30.60034 -29.61978 -27.37612 -26.63570 -25.08671 -24.39403 -24.27043 -22.14389 -21.09784 -19.05551 -18.43688 -18.28567 -18.09634 -17.72302 -17.39823 -17.21801 -16.50727 -16.11296 -15.96231 -15.53628 -15.40443 -15.30905 -15.09326 -14.68339 -14.34217 -14.12404 -13.63200 -13.53441 -13.09744 -13.02641 -12.89404 -12.73858 -12.64607 -12.53327 -12.40954 -12.34618 -11.92573 -11.84762 -11.66047 -11.28924 -11.04457 -10.88609 -10.57576 -10.44421 -10.28280 -9.35415 -8.77920 -8.06909 -6.09358 -0.25376 0.08380 0.77839 1.43391 1.45420 1.48701 1.52312 1.82328 2.48687 2.56899 3.00695 3.28208 3.41022 3.46941 3.63205 3.75305 3.84564 4.03042 4.07221 4.20292 4.36126 4.47111 4.53407 4.54938 4.58383 4.61848 4.66689 4.77162 4.88367 4.95171 5.04960 5.21273 5.43074 5.56014 5.70856 5.73924 6.15878 6.30067 6.39979 6.44984 6.58376 6.74430 7.02086 7.09211 7.54915 9.04204 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.021716 B = 0.002563 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.043434 B =10921.775479 C =11493.235028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.389 6.389 3 C 0.028 3.972 4 C 0.060 3.940 5 N -0.531 5.531 6 C 0.202 3.798 7 C -0.503 4.503 8 H 0.049 0.951 9 C 0.008 3.992 10 N -0.930 5.930 11 Si 0.952 3.048 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.274 1.274 15 C 0.032 3.968 16 C 0.524 3.476 17 O -0.530 6.530 18 N -0.654 5.654 19 C 0.105 3.895 20 C -0.082 4.082 21 C -0.129 4.129 22 C 0.139 3.861 23 Cl -0.031 7.031 24 N -0.478 5.478 25 C 0.101 3.899 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.023 0.977 34 H -0.002 1.002 35 H 0.259 0.741 36 H 0.083 0.917 37 H 0.113 0.887 38 H 0.434 0.566 39 H 0.149 0.851 40 H 0.164 0.836 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.353 20.304 -6.677 21.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.308 6.308 3 C -0.050 4.050 4 C -0.068 4.068 5 N -0.255 5.255 6 C 0.077 3.923 7 C -0.542 4.542 8 H 0.067 0.933 9 C -0.190 4.190 10 N -0.571 5.571 11 Si 0.778 3.222 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.200 1.200 15 C -0.099 4.099 16 C 0.313 3.687 17 O -0.405 6.405 18 N -0.303 5.303 19 C 0.007 3.993 20 C -0.110 4.110 21 C -0.150 4.150 22 C -0.025 4.025 23 Cl -0.003 7.003 24 N -0.189 5.189 25 C -0.059 4.059 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.040 0.960 34 H 0.016 0.984 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.131 0.869 38 H 0.274 0.726 39 H 0.167 0.833 40 H 0.182 0.818 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.716 20.953 -6.388 22.073 hybrid contribution -0.298 -1.349 0.694 1.546 sum -3.014 19.604 -5.694 20.636 Atomic orbital electron populations 1.22829 0.81462 1.02571 1.00439 1.88381 1.19962 1.27482 1.94977 1.23344 0.95892 0.85351 1.00444 1.22272 0.90900 1.00417 0.93201 1.61910 1.59131 1.03697 1.00719 1.19654 0.95772 0.81870 0.94985 1.21312 1.30315 0.92049 1.10487 0.93288 1.25602 0.96326 0.98648 0.98379 1.70040 1.42036 1.08804 1.36261 0.85710 0.78957 0.77458 0.80052 1.20008 1.20976 1.19987 1.22061 0.99029 0.90785 0.98061 1.21040 0.80838 0.86720 0.80140 1.90647 1.33525 1.78436 1.37912 1.43332 1.51135 1.07407 1.28402 1.18971 0.93438 0.86114 1.00782 1.21867 0.94690 0.97330 0.97113 1.21941 1.01977 0.91010 1.00108 1.21742 0.92295 0.87809 1.00688 1.98396 1.88265 1.16798 1.96812 1.67005 1.14289 1.22509 1.15061 1.22916 1.00140 0.84264 0.98599 0.93061 0.90684 0.93217 0.92536 0.92368 0.91988 0.88797 0.95961 0.98438 0.93213 0.89975 0.86921 0.72622 0.83346 0.81795 0.78320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 11.01 113.37 1.25 1.92 16 2 O -0.39 -15.14 7.60 -148.98 -1.13 -16.27 16 3 C 0.03 0.90 5.69 71.98 0.41 1.31 16 4 C 0.06 2.32 5.33 86.30 0.46 2.78 16 5 N -0.53 -21.70 4.48 -905.38 -4.06 -25.76 16 6 C 0.20 10.18 4.30 85.55 0.37 10.55 16 7 C -0.50 -28.36 8.43 25.60 0.22 -28.14 16 8 H 0.05 2.80 6.63 -2.91 -0.02 2.78 16 9 C 0.01 0.45 5.46 84.65 0.46 0.91 16 10 N -0.93 -55.17 13.29 21.45 0.28 -54.89 16 11 Si 0.95 45.25 29.54 68.60 2.03 47.28 16 12 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 14 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 15 C 0.03 0.93 5.09 85.55 0.44 1.36 16 16 C 0.52 13.58 7.45 87.65 0.65 14.24 16 17 O -0.53 -17.54 11.75 -3.08 -0.04 -17.58 16 18 N -0.65 -11.16 5.35 -303.18 -1.62 -12.78 16 19 C 0.10 1.97 6.33 38.22 0.24 2.22 16 20 C -0.08 -1.78 8.81 22.58 0.20 -1.58 16 21 C -0.13 -2.49 9.87 22.37 0.22 -2.27 16 22 C 0.14 2.85 7.27 84.72 0.62 3.46 16 23 Cl -0.03 -0.58 29.10 -2.72 -0.08 -0.65 16 24 N -0.48 -9.92 10.33 -186.21 -1.92 -11.85 16 25 C 0.10 1.65 11.12 84.82 0.94 2.60 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.60 5.78 -2.39 -0.01 1.58 16 31 H 0.06 2.79 6.16 -2.38 -0.01 2.77 16 32 H 0.09 3.44 6.02 -2.39 -0.01 3.43 16 33 H 0.02 1.20 5.30 -2.38 -0.01 1.19 16 34 H 0.00 -0.13 8.05 -2.39 -0.02 -0.15 16 35 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 36 H 0.08 2.10 5.71 -2.38 -0.01 2.09 16 37 H 0.11 3.04 8.01 -2.39 -0.02 3.02 16 38 H 0.43 4.02 8.82 -92.71 -0.82 3.20 16 39 H 0.15 3.74 6.27 -2.91 -0.02 3.72 16 40 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 41 H 0.20 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -72.02 352.66 0.19 -71.82 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.26 Total: 11.33 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 6.47 Total: 9.35 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -7.32 Total: -105.28 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -1.17 Total: -33.85 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.65 kcal Total: -72.02 0.19 -71.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851798659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.088 kcal (2) G-P(sol) polarization free energy of solvation -72.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds