Wall clock time and date at job start Tue Mar 31 2020 15:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46883 * 2 1 4 4 N 1.28430 * 125.19885 * 270.16818 * 3 2 1 5 5 C 1.30845 * 111.00684 * 180.32041 * 4 3 2 6 6 C 1.39784 * 107.89254 * 359.71431 * 5 4 3 7 7 Cl 1.73599 * 127.34279 * 179.97438 * 6 5 4 8 8 C 1.36806 * 125.18953 * 90.00319 * 3 2 1 9 9 C 1.46866 * 126.91349 * 359.95958 * 8 3 2 10 10 O 1.21571 * 119.99669 * 179.71236 * 9 8 3 11 11 O 1.34825 * 120.00327 * 359.70863 * 9 8 3 12 12 C 1.45201 * 117.00393 * 180.02562 * 11 9 8 13 13 C 1.53031 * 109.46452 * 150.00169 * 12 11 9 14 14 C 1.53189 * 109.31453 * 181.38925 * 13 12 11 15 15 N 1.46923 * 108.89141 * 305.29105 * 14 13 12 16 16 C 1.36942 * 120.62973 * 233.67281 * 15 14 13 17 17 H 1.08009 * 119.99402 * 152.59682 * 16 15 14 18 18 C 1.38805 * 120.00238 * 332.59801 * 16 15 14 19 19 N 1.31625 * 120.00214 * 159.34567 * 18 16 15 20 20 Si 1.86801 * 120.00062 * 339.34781 * 18 16 15 21 21 H 1.48499 * 109.47084 * 92.95592 * 20 18 16 22 22 H 1.48493 * 109.47117 * 212.95272 * 20 18 16 23 23 H 1.48495 * 109.46871 * 332.95714 * 20 18 16 24 24 C 1.47204 * 118.55713 * 53.54081 * 15 14 13 25 25 C 1.53041 * 109.46115 * 270.07150 * 12 11 9 26 26 H 1.09004 * 109.47240 * 299.99758 * 1 2 3 27 27 H 1.09002 * 109.47179 * 59.99581 * 1 2 3 28 28 H 1.09000 * 109.46903 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47240 * 240.00242 * 2 1 3 30 30 H 1.09002 * 109.47685 * 120.00266 * 2 1 3 31 31 H 1.08000 * 126.05904 * 179.71408 * 5 4 3 32 32 H 1.09006 * 109.44667 * 30.03027 * 12 11 9 33 33 H 1.09002 * 109.49720 * 61.43153 * 13 12 11 34 34 H 1.09000 * 109.49696 * 301.33856 * 13 12 11 35 35 H 1.08997 * 109.58812 * 65.15319 * 14 13 12 36 36 H 1.09002 * 109.58574 * 185.43314 * 14 13 12 37 37 H 0.96996 * 120.00339 * 180.02562 * 19 18 16 38 38 H 1.08991 * 109.53869 * 186.66950 * 24 15 14 39 39 H 1.09004 * 109.67659 * 66.36251 * 24 15 14 40 40 H 1.09001 * 109.49972 * 298.56680 * 25 12 11 41 41 H 1.09007 * 109.49466 * 58.66112 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2621 2.0802 -1.0495 5 6 2.6922 3.2736 -0.7287 6 6 2.7245 3.3579 0.6662 7 17 3.2159 4.7171 1.6279 8 6 2.2811 2.1245 1.1180 9 6 2.1299 1.6993 2.5156 10 8 2.4068 2.4660 3.4176 11 8 1.6842 0.4587 2.7984 12 6 1.5589 0.1070 4.2016 13 6 0.4273 -0.9087 4.3737 14 6 0.2753 -1.2510 5.8591 15 7 1.5730 -1.7040 6.3781 16 6 1.6842 -2.9049 7.0269 17 1 2.6225 -3.4398 7.0157 18 6 0.5913 -3.4347 7.6988 19 7 0.5449 -4.7223 7.9678 20 14 -0.8139 -2.3202 8.2212 21 1 -1.8592 -2.3139 7.1664 22 1 -1.3964 -2.8208 9.4922 23 1 -0.3033 -0.9401 8.4204 24 6 2.7492 -0.8408 6.1827 25 6 2.8734 -0.5030 4.6937 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.9726 4.0552 -1.4193 32 1 1.3346 1.0024 4.7815 33 1 0.6627 -1.8139 3.8139 34 1 -0.5042 -0.4822 4.0015 35 1 -0.0486 -0.3660 6.4068 36 1 -0.4628 -2.0444 5.9776 37 1 -0.2190 -5.0926 8.4369 38 1 3.6453 -1.3650 6.5145 39 1 2.6296 0.0780 6.7570 40 1 3.0859 -1.4120 4.1309 41 1 3.6830 0.2124 4.5493 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857013290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:07 Heat of formation + Delta-G solvation = 13.931646 kcal Electronic energy + Delta-G solvation = -26288.803801 eV Core-core repulsion = 22425.600348 eV Total energy + Delta-G solvation = -3863.203454 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.01354 -40.38615 -37.83470 -36.86858 -36.16312 -34.82569 -32.81523 -31.39428 -30.66576 -30.42657 -30.13303 -25.73318 -24.60887 -23.84394 -22.96958 -21.96958 -21.85996 -20.46420 -19.71904 -18.44444 -17.27015 -16.91579 -16.61978 -16.09760 -15.61001 -15.23468 -15.18752 -14.69852 -14.29203 -14.02100 -13.90918 -13.72085 -13.36183 -13.15961 -13.03344 -12.56341 -12.47476 -12.16646 -12.10367 -12.02989 -11.96213 -11.60399 -11.47698 -10.97088 -10.92411 -10.76926 -10.72505 -10.55228 -10.22338 -9.98328 -9.85668 -9.71745 -9.50235 -9.13114 -8.73377 -7.11463 -6.02865 -3.40069 0.62042 1.52935 2.04602 2.26702 2.46198 2.64357 3.24323 3.43394 3.45447 4.08317 4.21912 4.44788 4.56492 4.59620 4.77736 4.80164 4.92303 4.97261 5.01590 5.07361 5.28394 5.32561 5.41950 5.43570 5.64940 5.74797 5.77040 5.87072 5.89498 6.02443 6.12123 6.20049 6.23500 6.42468 6.47114 6.49424 6.54651 6.80271 7.42775 7.62759 7.85096 8.24232 8.83170 9.62297 9.98333 11.12816 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.020526 B = 0.003285 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.772386 B = 8522.067366 C = 9203.183893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.110 3.890 3 N -0.250 5.250 4 N -0.254 5.254 5 C 0.011 3.989 6 C -0.084 4.084 7 Cl -0.003 7.003 8 C -0.009 4.009 9 C 0.532 3.468 10 O -0.473 6.473 11 O -0.354 6.354 12 C 0.100 3.900 13 C -0.128 4.128 14 C 0.128 3.872 15 N -0.605 5.605 16 C -0.263 4.263 17 H 0.088 0.912 18 C 0.025 3.975 19 N -0.906 5.906 20 Si 0.880 3.120 21 H -0.287 1.287 22 H -0.301 1.301 23 H -0.270 1.270 24 C 0.151 3.849 25 C -0.148 4.148 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.198 0.802 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.029 0.971 36 H 0.082 0.918 37 H 0.264 0.736 38 H 0.071 0.929 39 H 0.028 0.972 40 H 0.073 0.927 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.986 13.976 -18.581 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.009 4.009 3 N -0.041 5.041 4 N -0.088 5.088 5 C -0.164 4.164 6 C -0.123 4.123 7 Cl 0.025 6.975 8 C -0.136 4.136 9 C 0.374 3.626 10 O -0.358 6.358 11 O -0.271 6.271 12 C 0.046 3.954 13 C -0.168 4.168 14 C 0.002 3.998 15 N -0.329 5.329 16 C -0.391 4.391 17 H 0.105 0.895 18 C -0.174 4.174 19 N -0.548 5.548 20 Si 0.710 3.290 21 H -0.215 1.215 22 H -0.229 1.229 23 H -0.195 1.195 24 C 0.025 3.975 25 C -0.188 4.188 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.215 0.785 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.736 13.291 -18.936 23.200 hybrid contribution -0.621 1.237 1.125 1.784 sum 1.116 14.529 -17.810 23.012 Atomic orbital electron populations 1.22135 0.92791 1.04230 1.03285 1.22394 0.96695 0.75292 1.06521 1.46012 1.43967 1.12637 1.01483 1.73259 1.16710 1.04991 1.13797 1.23562 1.04891 0.95543 0.92445 1.21358 1.07898 0.90326 0.92673 1.98382 1.89294 1.39552 1.70242 1.20393 1.12654 0.93306 0.87208 1.19420 0.75291 0.81208 0.86729 1.90942 1.45335 1.53536 1.45975 1.86604 1.76789 1.30656 1.33058 1.22994 0.97789 0.98515 0.76074 1.22260 0.95815 0.98190 1.00503 1.21379 0.89908 0.98519 0.89953 1.44489 1.03050 1.20422 1.64929 1.18914 1.00181 0.93544 1.26431 0.89490 1.25281 0.98038 0.95772 0.98329 1.69830 1.31133 1.10524 1.43327 0.86999 0.82508 0.81917 0.77586 1.21517 1.22930 1.19453 1.20928 0.91461 0.93948 0.91137 1.22480 0.95307 1.00820 1.00173 0.91388 0.91688 0.89347 0.87510 0.86172 0.78488 0.89812 0.90358 0.91836 0.95310 0.89990 0.92640 0.91042 0.95374 0.90820 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.24 37.16 0.38 -0.91 16 2 C 0.11 0.93 6.50 -4.04 -0.03 0.90 16 3 N -0.25 -2.74 3.35 -57.12 -0.19 -2.93 16 4 N -0.25 -2.74 11.89 30.61 0.36 -2.38 16 5 C 0.01 0.11 12.03 -17.39 -0.21 -0.10 16 6 C -0.08 -1.00 6.88 -38.86 -0.27 -1.26 16 7 Cl 0.00 -0.04 28.13 -51.86 -1.46 -1.50 16 8 C -0.01 -0.11 6.96 -82.01 -0.57 -0.68 16 9 C 0.53 7.68 7.90 34.22 0.27 7.95 16 10 O -0.47 -7.87 15.10 -19.32 -0.29 -8.17 16 11 O -0.35 -4.90 7.35 -40.83 -0.30 -5.20 16 12 C 0.10 1.57 2.42 -26.69 -0.06 1.50 16 13 C -0.13 -2.10 5.74 -26.62 -0.15 -2.26 16 14 C 0.13 2.65 4.20 -3.71 -0.02 2.63 16 15 N -0.61 -13.80 2.78 -172.10 -0.48 -14.28 16 16 C -0.26 -7.09 10.05 -15.06 -0.15 -7.24 16 17 H 0.09 2.51 8.06 -52.48 -0.42 2.08 16 18 C 0.03 0.70 5.23 -17.43 -0.09 0.61 16 19 N -0.91 -27.03 13.97 55.49 0.78 -26.25 16 20 Si 0.88 21.62 24.35 -169.99 -4.14 17.48 16 21 H -0.29 -6.73 6.62 56.52 0.37 -6.35 16 22 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 23 H -0.27 -6.54 6.63 56.52 0.38 -6.17 16 24 C 0.15 2.89 6.53 -3.56 -0.02 2.87 16 25 C -0.15 -2.42 5.72 -26.61 -0.15 -2.57 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.12 1.08 6.16 -51.93 -0.32 0.76 16 31 H 0.20 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.08 1.40 7.16 -51.93 -0.37 1.03 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.59 7.08 -51.93 -0.37 0.22 16 36 H 0.08 1.84 4.49 -51.93 -0.23 1.61 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.07 1.35 7.94 -51.93 -0.41 0.94 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 348.21 15.07 5.25 5.25 Total: -1.00 -31.10 348.21 -7.09 -38.19 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.54 Total: -1.67 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -1.07 Total: 1.45 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.47 Total: -45.84 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.59 Total: -13.36 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.14 Total: 17.48 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.46 Total: -1.50 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.10 -7.09 -38.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857013290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.120 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds