Wall clock time and date at job start Tue Mar 31 2020 15:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46883 * 2 1 4 4 N 1.28430 * 125.19885 * 270.16818 * 3 2 1 5 5 C 1.30845 * 111.00684 * 180.32041 * 4 3 2 6 6 C 1.39784 * 107.89254 * 359.71431 * 5 4 3 7 7 Cl 1.73599 * 127.34279 * 179.97438 * 6 5 4 8 8 C 1.36806 * 125.18953 * 90.00319 * 3 2 1 9 9 C 1.46866 * 126.91349 * 359.95958 * 8 3 2 10 10 O 1.21571 * 119.99669 * 179.71236 * 9 8 3 11 11 O 1.34825 * 120.00327 * 359.70863 * 9 8 3 12 12 C 1.45201 * 117.00393 * 180.02562 * 11 9 8 13 13 C 1.53031 * 109.46452 * 150.00169 * 12 11 9 14 14 C 1.53189 * 109.31453 * 181.38925 * 13 12 11 15 15 N 1.46923 * 108.89141 * 305.29105 * 14 13 12 16 16 C 1.36942 * 120.62973 * 233.67281 * 15 14 13 17 17 H 1.08009 * 119.99402 * 152.59682 * 16 15 14 18 18 C 1.38805 * 120.00238 * 332.59801 * 16 15 14 19 19 N 1.31625 * 120.00214 * 159.34567 * 18 16 15 20 20 Si 1.86801 * 120.00062 * 339.34781 * 18 16 15 21 21 H 1.48499 * 109.47084 * 92.95592 * 20 18 16 22 22 H 1.48493 * 109.47117 * 212.95272 * 20 18 16 23 23 H 1.48495 * 109.46871 * 332.95714 * 20 18 16 24 24 C 1.47204 * 118.55713 * 53.54081 * 15 14 13 25 25 C 1.53041 * 109.46115 * 270.07150 * 12 11 9 26 26 H 1.09004 * 109.47240 * 299.99758 * 1 2 3 27 27 H 1.09002 * 109.47179 * 59.99581 * 1 2 3 28 28 H 1.09000 * 109.46903 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47240 * 240.00242 * 2 1 3 30 30 H 1.09002 * 109.47685 * 120.00266 * 2 1 3 31 31 H 1.08000 * 126.05904 * 179.71408 * 5 4 3 32 32 H 1.09006 * 109.44667 * 30.03027 * 12 11 9 33 33 H 1.09002 * 109.49720 * 61.43153 * 13 12 11 34 34 H 1.09000 * 109.49696 * 301.33856 * 13 12 11 35 35 H 1.08997 * 109.58812 * 65.15319 * 14 13 12 36 36 H 1.09002 * 109.58574 * 185.43314 * 14 13 12 37 37 H 0.96996 * 120.00339 * 180.02562 * 19 18 16 38 38 H 1.08991 * 109.53869 * 186.66950 * 24 15 14 39 39 H 1.09004 * 109.67659 * 66.36251 * 24 15 14 40 40 H 1.09001 * 109.49972 * 298.56680 * 25 12 11 41 41 H 1.09007 * 109.49466 * 58.66112 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2621 2.0802 -1.0495 5 6 2.6922 3.2736 -0.7287 6 6 2.7245 3.3579 0.6662 7 17 3.2159 4.7171 1.6279 8 6 2.2811 2.1245 1.1180 9 6 2.1299 1.6993 2.5156 10 8 2.4068 2.4660 3.4176 11 8 1.6842 0.4587 2.7984 12 6 1.5589 0.1070 4.2016 13 6 0.4273 -0.9087 4.3737 14 6 0.2753 -1.2510 5.8591 15 7 1.5730 -1.7040 6.3781 16 6 1.6842 -2.9049 7.0269 17 1 2.6225 -3.4398 7.0157 18 6 0.5913 -3.4347 7.6988 19 7 0.5449 -4.7223 7.9678 20 14 -0.8139 -2.3202 8.2212 21 1 -1.8592 -2.3139 7.1664 22 1 -1.3964 -2.8208 9.4922 23 1 -0.3033 -0.9401 8.4204 24 6 2.7492 -0.8408 6.1827 25 6 2.8734 -0.5030 4.6937 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.9726 4.0552 -1.4193 32 1 1.3346 1.0024 4.7815 33 1 0.6627 -1.8139 3.8139 34 1 -0.5042 -0.4822 4.0015 35 1 -0.0486 -0.3660 6.4068 36 1 -0.4628 -2.0444 5.9776 37 1 -0.2190 -5.0926 8.4369 38 1 3.6453 -1.3650 6.5145 39 1 2.6296 0.0780 6.7570 40 1 3.0859 -1.4120 4.1309 41 1 3.6830 0.2124 4.5493 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857013290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:06 Heat of formation + Delta-G solvation = -4.290395 kcal Electronic energy + Delta-G solvation = -26289.593968 eV Core-core repulsion = 22425.600348 eV Total energy + Delta-G solvation = -3863.993621 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.84920 -41.56707 -39.29981 -37.81192 -37.41143 -35.57648 -34.63280 -32.67736 -32.09496 -31.92394 -30.86442 -27.31189 -25.66800 -24.93329 -24.39201 -23.40394 -22.78679 -21.46079 -21.22289 -19.38954 -18.93887 -18.20940 -17.66295 -17.19286 -17.01592 -16.56796 -16.04885 -15.96261 -15.62167 -15.42689 -15.06526 -14.74054 -14.71900 -14.49521 -14.29324 -13.94263 -13.88080 -13.56594 -13.12031 -13.01112 -12.86421 -12.83700 -12.61122 -12.51197 -12.24774 -12.19320 -12.05180 -11.81459 -11.65798 -11.62552 -11.46812 -11.17024 -10.74733 -10.56609 -9.98286 -9.02521 -8.17418 -5.51090 -0.34684 0.68931 1.21285 1.25846 1.29074 1.43241 1.51047 1.58295 1.59878 2.40281 3.01915 3.14106 3.29454 3.39338 3.64913 3.72857 3.74928 3.97354 4.04514 4.08541 4.15049 4.20647 4.33448 4.38269 4.53456 4.59196 4.69236 4.75737 4.79924 4.87163 4.88480 4.96965 5.04569 5.09246 5.14722 5.17727 5.40193 5.44092 5.83956 6.11341 6.39967 6.70621 6.86621 7.57642 7.97561 9.02150 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.020526 B = 0.003285 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.772386 B = 8522.067366 C = 9203.183893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.103 3.897 3 N -0.246 5.246 4 N -0.257 5.257 5 C 0.020 3.980 6 C -0.092 4.092 7 Cl -0.007 7.007 8 C -0.031 4.031 9 C 0.536 3.464 10 O -0.499 6.499 11 O -0.340 6.340 12 C 0.106 3.894 13 C -0.117 4.117 14 C 0.122 3.878 15 N -0.619 5.619 16 C -0.251 4.251 17 H 0.055 0.945 18 C -0.031 4.031 19 N -0.954 5.954 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.312 1.312 23 H -0.263 1.263 24 C 0.148 3.852 25 C -0.137 4.137 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.128 0.872 30 H 0.114 0.886 31 H 0.232 0.768 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.036 0.964 36 H 0.064 0.936 37 H 0.263 0.737 38 H 0.066 0.934 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.368 15.797 -20.822 26.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.015 4.015 3 N -0.037 5.037 4 N -0.091 5.091 5 C -0.155 4.155 6 C -0.130 4.130 7 Cl 0.022 6.978 8 C -0.158 4.158 9 C 0.378 3.622 10 O -0.385 6.385 11 O -0.257 6.257 12 C 0.052 3.948 13 C -0.156 4.156 14 C -0.003 4.003 15 N -0.344 5.344 16 C -0.380 4.380 17 H 0.073 0.927 18 C -0.226 4.226 19 N -0.600 5.600 20 Si 0.770 3.230 21 H -0.193 1.193 22 H -0.241 1.241 23 H -0.188 1.188 24 C 0.023 3.977 25 C -0.176 4.176 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.123 0.877 29 H 0.146 0.854 30 H 0.133 0.867 31 H 0.248 0.752 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.090 0.910 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.120 15.148 -21.223 26.098 hybrid contribution -0.320 0.699 1.722 1.886 sum 0.800 15.847 -19.501 25.141 Atomic orbital electron populations 1.22111 0.92121 1.05117 1.02569 1.22629 0.97211 0.74348 1.07316 1.46256 1.43445 1.13148 1.00896 1.73289 1.16743 1.05406 1.13640 1.24112 1.03523 0.95808 0.92031 1.21597 1.07880 0.90011 0.93551 1.98380 1.89294 1.39632 1.70517 1.20293 1.14406 0.94229 0.86824 1.19658 0.74464 0.80751 0.87299 1.90932 1.46628 1.54076 1.46867 1.86611 1.76779 1.30724 1.31573 1.22732 0.96996 0.98009 0.77034 1.22041 0.97540 0.98611 0.97409 1.21416 0.88309 0.97920 0.92694 1.44593 1.04967 1.19781 1.65059 1.18844 0.98769 0.94578 1.25811 0.92736 1.25873 1.00967 0.96731 0.99016 1.69955 1.32419 1.12328 1.45311 0.86000 0.80096 0.79962 0.76972 1.19330 1.24060 1.18794 1.21042 0.89982 0.93422 0.93257 1.22300 0.96283 1.01115 0.97905 0.92939 0.91481 0.87664 0.85352 0.86747 0.75219 0.90306 0.90392 0.88997 0.94637 0.91811 0.92835 0.91585 0.94632 0.90965 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 10.24 71.98 0.74 -1.36 16 2 C 0.10 1.49 6.50 86.38 0.56 2.05 16 3 N -0.25 -4.82 3.35 -334.63 -1.12 -5.94 16 4 N -0.26 -4.84 11.89 -57.08 -0.68 -5.52 16 5 C 0.02 0.34 12.03 85.21 1.03 1.36 16 6 C -0.09 -1.98 6.88 22.74 0.16 -1.83 16 7 Cl -0.01 -0.15 28.13 -2.72 -0.08 -0.23 16 8 C -0.03 -0.72 6.96 40.72 0.28 -0.44 16 9 C 0.54 14.54 7.90 70.08 0.55 15.09 16 10 O -0.50 -15.89 15.10 19.60 0.30 -15.60 16 11 O -0.34 -8.69 7.35 -57.37 -0.42 -9.11 16 12 C 0.11 3.11 2.42 30.62 0.07 3.19 16 13 C -0.12 -3.55 5.74 30.67 0.18 -3.38 16 14 C 0.12 4.80 4.20 86.36 0.36 5.17 16 15 N -0.62 -27.91 2.78 -698.40 -1.94 -29.85 16 16 C -0.25 -13.77 10.05 84.03 0.84 -12.92 16 17 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 18 C -0.03 -1.75 5.23 84.86 0.44 -1.30 16 19 N -0.95 -58.52 13.97 21.65 0.30 -58.22 16 20 Si 0.94 44.82 24.35 68.60 1.67 46.49 16 21 H -0.27 -11.71 6.62 99.48 0.66 -11.06 16 22 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 23 H -0.26 -12.12 6.63 99.48 0.66 -11.46 16 24 C 0.15 5.54 6.53 86.31 0.56 6.10 16 25 C -0.14 -4.24 5.72 30.67 0.18 -4.07 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.11 1.81 6.16 -2.39 -0.01 1.79 16 31 H 0.23 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.08 2.45 7.16 -2.38 -0.02 2.44 16 33 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.04 1.37 7.08 -2.39 -0.02 1.35 16 36 H 0.06 2.76 4.49 -2.39 -0.01 2.75 16 37 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 38 H 0.07 2.50 7.94 -2.39 -0.02 2.48 16 39 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -67.49 348.21 4.94 -62.55 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 0.95 Total: 7.77 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 5.96 Total: 7.66 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -3.44 Total: -99.53 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.13 Total: -24.71 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.67 Total: 46.49 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.08 Total: -0.23 kcal Total: -67.49 4.94 -62.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857013290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.261 kcal (2) G-P(sol) polarization free energy of solvation -67.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds