Wall clock time and date at job start Tue Mar 31 2020 14:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.87022 * 2 1 4 4 C 1.51561 * 109.83440 * 120.92048 * 2 1 3 5 5 S 1.75753 * 125.34279 * 289.17739 * 4 2 1 6 6 C 1.75741 * 91.04919 * 179.72092 * 5 4 2 7 7 C 1.32902 * 109.56948 * 0.29757 * 6 5 4 8 8 C 1.34633 * 124.56039 * 109.00863 * 4 2 1 9 9 C 1.52245 * 123.14414 * 0.43326 * 8 4 2 10 10 C 1.53005 * 109.17830 * 340.88237 * 9 8 4 11 11 N 1.47080 * 108.93653 * 46.98667 * 10 9 8 12 12 C 1.34775 * 121.09171 * 115.11659 * 11 10 9 13 13 O 1.21585 * 120.00028 * 175.12074 * 12 11 10 14 14 C 1.47644 * 119.99917 * 355.12712 * 12 11 10 15 15 C 1.40017 * 119.89270 * 325.75582 * 14 12 11 16 16 C 1.36322 * 120.10093 * 179.71882 * 15 14 12 17 17 C 1.40878 * 119.89416 * 0.57398 * 16 15 14 18 18 C 1.41115 * 120.10544 * 179.67395 * 17 16 15 19 19 H 1.07993 * 120.00212 * 204.38436 * 18 17 16 20 20 C 1.40226 * 119.99708 * 24.38551 * 18 17 16 21 21 N 1.30645 * 119.99848 * 17.65567 * 20 18 17 22 22 Si 1.86797 * 119.99851 * 197.66290 * 20 18 17 23 23 H 1.48496 * 109.47535 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47242 * 119.99962 * 22 20 18 25 25 H 1.48503 * 109.46915 * 239.99526 * 22 20 18 26 26 C 1.40890 * 119.79698 * 359.70123 * 17 16 15 27 27 C 1.36322 * 119.88746 * 359.97438 * 26 17 16 28 28 H 1.08997 * 109.47288 * 299.07741 * 1 2 3 29 29 H 1.08998 * 109.46819 * 59.07981 * 1 2 3 30 30 H 1.09001 * 109.46460 * 179.07491 * 1 2 3 31 31 H 1.07990 * 125.21112 * 180.02562 * 6 5 4 32 32 H 1.08007 * 122.11196 * 179.78432 * 7 6 5 33 33 H 1.09004 * 109.52235 * 220.97896 * 9 8 4 34 34 H 1.08997 * 109.52020 * 100.79614 * 9 8 4 35 35 H 1.08995 * 109.56230 * 287.15077 * 10 9 8 36 36 H 1.09001 * 109.56174 * 166.82039 * 10 9 8 37 37 H 1.07993 * 119.94982 * 359.97438 * 15 14 12 38 38 H 1.08003 * 120.04663 * 180.25004 * 16 15 14 39 39 H 0.97008 * 119.99701 * 179.97438 * 21 20 18 40 40 H 1.08001 * 120.05747 * 179.97438 * 26 17 16 41 41 H 1.08000 * 119.94590 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0443 -0.7326 1.2231 5 16 1.9462 -0.1445 2.8764 6 6 2.7372 -1.5957 3.4737 7 6 3.0236 -2.3985 2.4540 8 6 2.6431 -1.9381 1.1956 9 6 2.8873 -2.7172 -0.0894 10 6 1.9643 -2.1808 -1.1855 11 7 2.0295 -0.7115 -1.1877 12 6 2.5306 -0.0387 -2.2425 13 8 2.4940 1.1765 -2.2615 14 6 3.1237 -0.7772 -3.3751 15 6 3.8169 -1.9714 -3.1430 16 6 4.3613 -2.6597 -4.1861 17 6 4.2360 -2.1614 -5.4979 18 6 4.8038 -2.8668 -6.5802 19 1 5.0636 -2.3439 -7.4887 20 6 5.0306 -4.2467 -6.4761 21 7 4.4223 -4.9406 -5.5513 22 14 6.2026 -5.0924 -7.6594 23 1 6.7585 -4.0919 -8.6055 24 1 7.3103 -5.7203 -6.8950 25 1 5.4705 -6.1378 -8.4187 26 6 3.5426 -0.9564 -5.7258 27 6 2.9958 -0.2784 -4.6770 28 1 -0.3634 0.4994 0.8981 29 1 -0.3633 0.5281 -0.8816 30 1 -0.3632 -1.0276 -0.0166 31 1 2.9606 -1.8014 4.5100 32 1 3.5173 -3.3490 2.5926 33 1 2.6768 -3.7733 0.0794 34 1 3.9261 -2.5965 -0.3967 35 1 0.9408 -2.5003 -0.9894 36 1 2.2880 -2.5619 -2.1540 37 1 3.9168 -2.3499 -2.1365 38 1 4.8923 -3.5829 -4.0065 39 1 4.5789 -5.8953 -5.4795 40 1 3.4444 -0.5703 -6.7296 41 1 2.4637 0.6452 -4.8507 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882185262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:30 Heat of formation + Delta-G solvation = 25.150334 kcal Electronic energy + Delta-G solvation = -25050.569237 eV Core-core repulsion = 21600.745232 eV Total energy + Delta-G solvation = -3449.824005 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.17221 -38.20279 -37.11495 -35.44544 -33.99821 -32.62845 -30.76550 -29.78336 -29.50971 -27.69271 -25.96475 -24.68189 -23.06790 -22.12076 -21.13890 -20.96005 -19.58131 -17.66310 -17.52799 -17.21662 -16.14163 -15.93617 -15.52842 -15.17987 -14.58450 -14.36374 -14.03716 -13.84602 -13.46431 -13.12616 -13.04927 -12.92335 -12.74090 -12.41206 -12.08628 -12.00831 -11.88219 -11.78074 -11.63332 -11.37708 -11.27311 -11.15916 -10.99732 -10.90131 -10.72393 -10.50310 -10.06173 -9.56220 -9.32301 -8.97447 -8.64222 -8.36334 -8.28502 -7.68131 -7.55818 -7.03712 -4.60817 0.96722 1.54332 1.94459 2.26843 2.65718 2.90014 2.94841 2.98370 3.00355 3.44362 3.70694 3.75338 4.46951 4.60886 4.77682 5.09582 5.17605 5.23545 5.34885 5.42784 5.48323 5.52295 5.56600 5.68319 5.80700 5.88256 5.98070 6.04104 6.14826 6.20636 6.22036 6.26726 6.38466 6.54545 6.76207 6.81525 6.87735 7.03680 7.11821 7.42488 7.59624 7.78985 7.84476 8.02640 8.07747 8.38961 8.62921 8.73807 8.93646 9.87699 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.019707 B = 0.003259 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.451304 B = 8588.395390 C = 9626.627087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.214 3.786 3 H 0.104 0.896 4 C -0.186 4.186 5 S 0.098 5.902 6 C -0.219 4.219 7 C -0.125 4.125 8 C -0.095 4.095 9 C -0.077 4.077 10 C 0.091 3.909 11 N -0.610 5.610 12 C 0.581 3.419 13 O -0.567 6.567 14 C -0.279 4.279 15 C -0.077 4.077 16 C -0.176 4.176 17 C 0.127 3.873 18 C -0.443 4.443 19 H 0.084 0.916 20 C 0.075 3.925 21 N -0.773 5.773 22 Si 0.911 3.089 23 H -0.258 1.258 24 H -0.269 1.269 25 H -0.272 1.272 26 C -0.236 4.236 27 C -0.026 4.026 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.163 0.837 32 H 0.138 0.862 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.122 0.878 39 H 0.285 0.715 40 H 0.098 0.902 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 -0.528 13.310 13.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.108 3.892 3 H 0.122 0.878 4 C -0.304 4.304 5 S 0.362 5.638 6 C -0.354 4.354 7 C -0.155 4.155 8 C -0.107 4.107 9 C -0.117 4.117 10 C -0.032 4.032 11 N -0.344 5.344 12 C 0.377 3.623 13 O -0.448 6.448 14 C -0.284 4.284 15 C -0.096 4.096 16 C -0.196 4.196 17 C 0.124 3.876 18 C -0.471 4.471 19 H 0.102 0.898 20 C -0.146 4.146 21 N -0.396 5.396 22 Si 0.735 3.265 23 H -0.181 1.181 24 H -0.194 1.194 25 H -0.197 1.197 26 C -0.256 4.256 27 C -0.045 4.045 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.180 0.820 32 H 0.156 0.844 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.139 0.861 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.657 1.195 14.093 14.890 hybrid contribution 1.069 -1.917 -0.831 2.347 sum -3.588 -0.723 13.262 13.758 Atomic orbital electron populations 1.22105 0.94031 1.02613 1.02420 1.19539 0.93584 0.95851 0.80259 0.87778 1.25109 1.07858 0.99678 0.97757 1.84036 1.59870 1.21165 0.98709 1.25321 1.08471 0.98658 1.02998 1.20077 1.02691 1.01480 0.91273 1.19579 1.00754 0.94784 0.95602 1.21017 1.01296 0.98641 0.90791 1.22173 0.99280 0.80039 1.01684 1.48079 1.63422 1.06651 1.16235 1.18729 0.75554 0.86680 0.81349 1.90642 1.59741 1.14322 1.80102 1.18802 1.16127 1.01118 0.92336 1.20828 0.97307 0.93288 0.98147 1.21012 1.05034 1.01702 0.91812 1.17777 0.86697 0.90315 0.92855 1.19862 1.33754 0.92569 1.00924 0.89779 1.26068 0.94550 0.97996 0.95958 1.69739 1.31911 1.08929 1.29070 0.86193 0.80282 0.79473 0.80537 1.18107 1.19402 1.19701 1.20694 1.07386 1.00525 0.96997 1.20270 0.96221 0.96479 0.91535 0.91774 0.91366 0.92046 0.81967 0.84449 0.89518 0.89662 0.91716 0.85768 0.87788 0.86052 0.90348 0.88422 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.42 37.16 0.35 -1.64 16 2 C 0.21 3.29 3.20 -68.28 -0.22 3.08 16 3 H 0.10 1.77 7.27 -51.93 -0.38 1.39 16 4 C -0.19 -2.60 5.73 -35.16 -0.20 -2.80 16 5 S 0.10 1.12 23.32 -107.50 -2.51 -1.38 16 6 C -0.22 -2.31 11.20 28.89 0.32 -1.99 16 7 C -0.12 -1.43 9.99 -41.03 -0.41 -1.84 16 8 C -0.10 -1.28 5.80 -104.74 -0.61 -1.89 16 9 C -0.08 -1.03 5.92 -27.11 -0.16 -1.20 16 10 C 0.09 1.39 5.34 -3.72 -0.02 1.37 16 11 N -0.61 -10.69 2.60 -167.13 -0.44 -11.13 16 12 C 0.58 12.43 7.40 -12.42 -0.09 12.33 16 13 O -0.57 -13.53 16.36 5.29 0.09 -13.44 16 14 C -0.28 -6.26 5.40 -104.73 -0.57 -6.83 16 15 C -0.08 -1.66 7.29 -39.61 -0.29 -1.95 16 16 C -0.18 -4.18 8.64 -39.27 -0.34 -4.52 16 17 C 0.13 3.15 5.58 -106.80 -0.60 2.56 16 18 C -0.44 -10.83 9.05 -37.74 -0.34 -11.18 16 19 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 20 C 0.08 1.71 5.14 -17.31 -0.09 1.62 16 21 N -0.77 -17.89 10.92 55.56 0.61 -17.28 16 22 Si 0.91 17.00 29.60 -169.99 -5.03 11.97 16 23 H -0.26 -4.82 7.11 56.52 0.40 -4.41 16 24 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 25 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 26 C -0.24 -5.61 9.73 -39.27 -0.38 -5.99 16 27 C -0.03 -0.60 9.53 -39.61 -0.38 -0.97 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.77 7.39 -51.93 -0.38 0.38 16 31 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.14 1.31 8.06 -52.48 -0.42 0.88 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.21 6.57 -51.93 -0.34 0.87 16 35 H 0.06 0.89 7.39 -51.93 -0.38 0.51 16 36 H 0.12 2.13 4.22 -51.93 -0.22 1.91 16 37 H 0.10 1.96 3.97 -52.49 -0.21 1.75 16 38 H 0.12 2.92 6.13 -52.48 -0.32 2.59 16 39 H 0.29 5.92 8.29 -40.82 -0.34 5.58 16 40 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 41 H 0.10 2.13 7.97 -52.49 -0.42 1.71 16 LS Contribution 344.20 15.07 5.19 5.19 Total: -1.00 -27.53 344.20 -10.85 -38.38 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -4.74 Total: 9.54 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -4.02 Total: -21.84 kcal Atomic # 7 Polarization: -28.58 SS G_CDS: 0.17 Total: -28.41 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.51 Total: -1.38 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.53 -10.85 -38.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882185262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.527 kcal (2) G-P(sol) polarization free energy of solvation -27.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds