Wall clock time and date at job start Tue Mar 31 2020 14:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.87022 * 2 1 4 4 C 1.51561 * 109.83440 * 120.92048 * 2 1 3 5 5 S 1.75753 * 125.34279 * 289.17739 * 4 2 1 6 6 C 1.75741 * 91.04919 * 179.72092 * 5 4 2 7 7 C 1.32902 * 109.56948 * 0.29757 * 6 5 4 8 8 C 1.34633 * 124.56039 * 109.00863 * 4 2 1 9 9 C 1.52245 * 123.14414 * 0.43326 * 8 4 2 10 10 C 1.53005 * 109.17830 * 340.88237 * 9 8 4 11 11 N 1.47080 * 108.93653 * 46.98667 * 10 9 8 12 12 C 1.34775 * 121.09171 * 115.11659 * 11 10 9 13 13 O 1.21585 * 120.00028 * 175.12074 * 12 11 10 14 14 C 1.47644 * 119.99917 * 355.12712 * 12 11 10 15 15 C 1.40017 * 119.89270 * 325.75582 * 14 12 11 16 16 C 1.36322 * 120.10093 * 179.71882 * 15 14 12 17 17 C 1.40878 * 119.89416 * 0.57398 * 16 15 14 18 18 C 1.41115 * 120.10544 * 179.67395 * 17 16 15 19 19 H 1.07993 * 120.00212 * 204.38436 * 18 17 16 20 20 C 1.40226 * 119.99708 * 24.38551 * 18 17 16 21 21 N 1.30645 * 119.99848 * 17.65567 * 20 18 17 22 22 Si 1.86797 * 119.99851 * 197.66290 * 20 18 17 23 23 H 1.48496 * 109.47535 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47242 * 119.99962 * 22 20 18 25 25 H 1.48503 * 109.46915 * 239.99526 * 22 20 18 26 26 C 1.40890 * 119.79698 * 359.70123 * 17 16 15 27 27 C 1.36322 * 119.88746 * 359.97438 * 26 17 16 28 28 H 1.08997 * 109.47288 * 299.07741 * 1 2 3 29 29 H 1.08998 * 109.46819 * 59.07981 * 1 2 3 30 30 H 1.09001 * 109.46460 * 179.07491 * 1 2 3 31 31 H 1.07990 * 125.21112 * 180.02562 * 6 5 4 32 32 H 1.08007 * 122.11196 * 179.78432 * 7 6 5 33 33 H 1.09004 * 109.52235 * 220.97896 * 9 8 4 34 34 H 1.08997 * 109.52020 * 100.79614 * 9 8 4 35 35 H 1.08995 * 109.56230 * 287.15077 * 10 9 8 36 36 H 1.09001 * 109.56174 * 166.82039 * 10 9 8 37 37 H 1.07993 * 119.94982 * 359.97438 * 15 14 12 38 38 H 1.08003 * 120.04663 * 180.25004 * 16 15 14 39 39 H 0.97008 * 119.99701 * 179.97438 * 21 20 18 40 40 H 1.08001 * 120.05747 * 179.97438 * 26 17 16 41 41 H 1.08000 * 119.94590 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0443 -0.7326 1.2231 5 16 1.9462 -0.1445 2.8764 6 6 2.7372 -1.5957 3.4737 7 6 3.0236 -2.3985 2.4540 8 6 2.6431 -1.9381 1.1956 9 6 2.8873 -2.7172 -0.0894 10 6 1.9643 -2.1808 -1.1855 11 7 2.0295 -0.7115 -1.1877 12 6 2.5306 -0.0387 -2.2425 13 8 2.4940 1.1765 -2.2615 14 6 3.1237 -0.7772 -3.3751 15 6 3.8169 -1.9714 -3.1430 16 6 4.3613 -2.6597 -4.1861 17 6 4.2360 -2.1614 -5.4979 18 6 4.8038 -2.8668 -6.5802 19 1 5.0636 -2.3439 -7.4887 20 6 5.0306 -4.2467 -6.4761 21 7 4.4223 -4.9406 -5.5513 22 14 6.2026 -5.0924 -7.6594 23 1 6.7585 -4.0919 -8.6055 24 1 7.3103 -5.7203 -6.8950 25 1 5.4705 -6.1378 -8.4187 26 6 3.5426 -0.9564 -5.7258 27 6 2.9958 -0.2784 -4.6770 28 1 -0.3634 0.4994 0.8981 29 1 -0.3633 0.5281 -0.8816 30 1 -0.3632 -1.0276 -0.0166 31 1 2.9606 -1.8014 4.5100 32 1 3.5173 -3.3490 2.5926 33 1 2.6768 -3.7733 0.0794 34 1 3.9261 -2.5965 -0.3967 35 1 0.9408 -2.5003 -0.9894 36 1 2.2880 -2.5619 -2.1540 37 1 3.9168 -2.3499 -2.1365 38 1 4.8923 -3.5829 -4.0065 39 1 4.5789 -5.8953 -5.4795 40 1 3.4444 -0.5703 -6.7296 41 1 2.4637 0.6452 -4.8507 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882185262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:29 Heat of formation + Delta-G solvation = 13.173623 kcal Electronic energy + Delta-G solvation = -25051.088587 eV Core-core repulsion = 21600.745232 eV Total energy + Delta-G solvation = -3450.343354 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.58817 -39.58139 -38.78366 -36.73549 -35.72712 -33.92425 -32.09116 -31.36754 -31.30902 -28.76275 -27.69998 -25.83142 -24.38912 -23.47556 -22.89603 -22.29198 -20.93560 -19.37360 -18.92021 -18.39442 -17.51891 -17.42933 -16.91423 -16.46215 -16.03578 -15.78753 -15.52928 -15.14889 -14.92419 -14.52537 -14.42362 -14.13026 -14.04807 -13.75600 -13.66849 -13.56651 -13.15309 -12.99758 -12.86263 -12.82404 -12.67035 -12.63413 -12.38864 -12.19262 -12.06355 -11.75729 -11.62577 -11.31611 -11.06343 -10.67708 -9.82828 -9.53879 -9.48648 -9.37690 -9.22832 -8.76047 -6.45441 0.03518 0.46691 0.64781 1.05750 1.13978 1.40033 1.43656 1.56136 1.73458 1.97660 2.09992 2.19124 2.72302 3.49062 3.65963 3.76772 3.93579 4.02188 4.10624 4.18758 4.29023 4.36724 4.42312 4.49017 4.51464 4.57318 4.76446 4.81681 4.87390 4.91525 5.02188 5.06466 5.14593 5.14946 5.17989 5.30603 5.42006 5.51261 5.58074 5.63539 5.81995 5.98400 6.01245 6.23814 6.46755 6.56354 6.80131 6.90536 7.28325 8.18620 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.019707 B = 0.003259 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.451304 B = 8588.395390 C = 9626.627087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.211 3.789 3 H 0.081 0.919 4 C -0.217 4.217 5 S 0.115 5.885 6 C -0.205 4.205 7 C -0.138 4.138 8 C -0.099 4.099 9 C -0.074 4.074 10 C 0.088 3.912 11 N -0.603 5.603 12 C 0.578 3.422 13 O -0.601 6.601 14 C -0.289 4.289 15 C -0.063 4.063 16 C -0.193 4.193 17 C 0.102 3.898 18 C -0.475 4.475 19 H 0.082 0.918 20 C 0.041 3.959 21 N -0.794 5.794 22 Si 0.984 3.016 23 H -0.260 1.260 24 H -0.260 1.260 25 H -0.263 1.263 26 C -0.252 4.252 27 C -0.035 4.035 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.194 0.806 32 H 0.160 0.840 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.131 0.869 38 H 0.117 0.883 39 H 0.297 0.703 40 H 0.103 0.897 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.839 -2.349 15.434 16.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.106 3.894 3 H 0.099 0.901 4 C -0.335 4.335 5 S 0.380 5.620 6 C -0.340 4.340 7 C -0.168 4.168 8 C -0.112 4.112 9 C -0.114 4.114 10 C -0.033 4.033 11 N -0.335 5.335 12 C 0.372 3.628 13 O -0.485 6.485 14 C -0.293 4.293 15 C -0.081 4.081 16 C -0.213 4.213 17 C 0.098 3.902 18 C -0.502 4.502 19 H 0.100 0.900 20 C -0.179 4.179 21 N -0.418 5.418 22 Si 0.804 3.196 23 H -0.184 1.184 24 H -0.185 1.185 25 H -0.188 1.188 26 C -0.271 4.271 27 C -0.054 4.054 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.211 0.789 32 H 0.177 0.823 33 H 0.133 0.867 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.148 0.852 38 H 0.134 0.866 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.491 -0.645 16.257 16.879 hybrid contribution 0.942 -1.337 -1.361 2.127 sum -3.549 -1.982 14.897 15.441 Atomic orbital electron populations 1.22047 0.92253 1.03207 1.02872 1.19604 0.94960 0.94703 0.80160 0.90089 1.24992 1.09694 1.00309 0.98461 1.83987 1.59730 1.21600 0.96714 1.25760 1.06529 0.97355 1.04345 1.20241 1.03373 1.02738 0.90418 1.19748 1.00494 0.94588 0.96360 1.20984 0.99944 1.00240 0.90189 1.22267 1.01031 0.78516 1.01525 1.48058 1.61857 1.07725 1.15863 1.18585 0.75852 0.86227 0.82091 1.90613 1.61318 1.15555 1.81005 1.19045 1.16179 1.01442 0.92660 1.21018 0.95673 0.92437 0.98977 1.21018 1.06157 1.02067 0.92026 1.18108 0.87330 0.90958 0.93760 1.20098 1.35197 0.93870 1.01015 0.90005 1.26837 0.95525 0.97854 0.97641 1.69745 1.32223 1.09842 1.29959 0.85118 0.78053 0.78191 0.78229 1.18393 1.18481 1.18770 1.20820 1.07979 1.00798 0.97515 1.20412 0.96337 0.96660 0.92033 0.89626 0.92677 0.91212 0.78877 0.82259 0.86716 0.90694 0.89804 0.87794 0.85176 0.86565 0.89168 0.87900 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.42 71.98 0.68 -2.98 16 2 C 0.21 6.44 3.20 44.39 0.14 6.58 16 3 H 0.08 2.83 7.27 -2.39 -0.02 2.81 16 4 C -0.22 -5.71 5.73 25.13 0.14 -5.56 16 5 S 0.11 2.36 23.32 -56.49 -1.32 1.05 16 6 C -0.20 -3.53 11.20 66.64 0.75 -2.79 16 7 C -0.14 -2.69 9.99 21.35 0.21 -2.48 16 8 C -0.10 -2.44 5.80 -19.94 -0.12 -2.55 16 9 C -0.07 -1.83 5.92 30.35 0.18 -1.65 16 10 C 0.09 2.62 5.34 86.27 0.46 3.08 16 11 N -0.60 -21.14 2.60 -800.95 -2.09 -23.23 16 12 C 0.58 25.31 7.40 86.73 0.64 25.95 16 13 O -0.60 -29.66 16.36 -3.98 -0.07 -29.73 16 14 C -0.29 -13.31 5.40 -19.93 -0.11 -13.42 16 15 C -0.06 -2.74 7.29 22.25 0.16 -2.58 16 16 C -0.19 -9.39 8.64 22.47 0.19 -9.19 16 17 C 0.10 5.22 5.58 -21.28 -0.12 5.10 16 18 C -0.47 -23.75 9.05 23.46 0.21 -23.54 16 19 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 20 C 0.04 1.85 5.14 85.35 0.44 2.29 16 21 N -0.79 -36.68 10.92 21.87 0.24 -36.44 16 22 Si 0.98 34.35 29.60 68.60 2.03 36.38 16 23 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 24 H -0.26 -8.68 7.11 99.48 0.71 -7.98 16 25 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16 26 C -0.25 -12.43 9.73 22.47 0.22 -12.22 16 27 C -0.04 -1.69 9.53 22.25 0.21 -1.48 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.62 7.39 -2.39 -0.02 1.61 16 31 H 0.19 2.08 8.06 -2.92 -0.02 2.06 16 32 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.07 2.02 6.57 -2.39 -0.02 2.01 16 35 H 0.08 2.17 7.39 -2.39 -0.02 2.16 16 36 H 0.10 3.54 4.22 -2.39 -0.01 3.53 16 37 H 0.13 4.89 3.97 -2.91 -0.01 4.88 16 38 H 0.12 5.69 6.13 -2.91 -0.02 5.67 16 39 H 0.30 12.09 8.29 -92.70 -0.77 11.32 16 40 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 41 H 0.10 4.58 7.97 -2.91 -0.02 4.56 16 Total: -1.00 -60.95 344.20 4.17 -56.78 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 1.07 Total: 32.63 kcal Atomic # 6 Polarization: -41.74 SS G_CDS: 4.30 Total: -37.43 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -1.85 Total: -59.67 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.07 Total: -29.73 kcal Atomic # 14 Polarization: 34.35 SS G_CDS: 2.03 Total: 36.38 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -1.32 Total: 1.05 kcal Total: -60.95 4.17 -56.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882185262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.952 kcal (2) G-P(sol) polarization free energy of solvation -60.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds