Wall clock time and date at job start Tue Mar 31 2020 14:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46788 * 2 1 4 4 H 1.09002 * 109.85804 * 179.18254 * 3 2 1 5 5 C 1.50781 * 109.81040 * 300.05778 * 3 2 1 6 6 C 1.38437 * 131.20183 * 299.52237 * 5 3 2 7 7 C 1.38149 * 120.10280 * 180.02562 * 6 5 3 8 8 C 1.38247 * 119.96064 * 0.02562 * 7 6 5 9 9 C 1.38138 * 119.96531 * 0.02562 * 8 7 6 10 10 C 1.38061 * 108.86269 * 119.55112 * 5 3 2 11 11 C 1.50781 * 108.86112 * 359.97438 * 10 5 3 12 12 N 1.46630 * 107.70241 * 0.02562 * 11 10 5 13 13 C 1.34776 * 126.56582 * 180.02562 * 12 11 10 14 14 O 1.21759 * 120.00404 * 184.94683 * 13 12 11 15 15 C 1.46238 * 119.99797 * 4.94158 * 13 12 11 16 16 S 1.75667 * 125.22995 * 359.69805 * 15 13 12 17 17 C 1.75473 * 92.09396 * 179.97438 * 16 15 13 18 18 C 1.32763 * 111.36056 * 0.35316 * 17 16 15 19 19 C 1.39551 * 125.22665 * 180.02562 * 15 13 12 20 20 C 1.40530 * 123.71393 * 359.97438 * 19 15 13 21 21 H 1.07999 * 120.00318 * 330.84402 * 20 19 15 22 22 C 1.40308 * 119.99891 * 150.85241 * 20 19 15 23 23 N 1.30639 * 120.00027 * 168.59177 * 22 20 19 24 24 Si 1.86800 * 120.00130 * 348.58349 * 22 20 19 25 25 H 1.48507 * 109.46681 * 92.09565 * 24 22 20 26 26 H 1.48497 * 109.47259 * 212.09693 * 24 22 20 27 27 H 1.48498 * 109.46869 * 332.10046 * 24 22 20 28 28 H 1.08994 * 109.47011 * 305.00491 * 1 2 3 29 29 H 1.09000 * 109.47083 * 65.01062 * 1 2 3 30 30 H 1.09000 * 109.46583 * 185.01009 * 1 2 3 31 31 H 1.08990 * 109.47075 * 239.99985 * 2 1 3 32 32 H 1.09004 * 109.47115 * 119.99656 * 2 1 3 33 33 H 1.08000 * 119.95160 * 0.05026 * 6 5 3 34 34 H 1.08005 * 120.01910 * 180.29746 * 7 6 5 35 35 H 1.08000 * 120.01602 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.95415 * 179.97438 * 9 8 7 37 37 H 1.09004 * 109.80739 * 119.55104 * 11 10 5 38 38 H 1.08996 * 109.81583 * 240.45232 * 11 10 5 39 39 H 1.08001 * 124.31944 * 180.02562 * 17 16 15 40 40 H 1.08004 * 122.78262 * 179.70912 * 18 17 16 41 41 H 0.97005 * 119.99888 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1299 1.4500 0.0146 5 6 1.5404 2.1611 -1.2278 6 6 1.7348 1.9081 -2.5749 7 6 1.1593 2.7300 -3.5245 8 6 0.3884 3.8074 -3.1291 9 6 0.1949 4.0611 -1.7851 10 6 0.7702 3.2368 -0.8330 11 6 0.7255 3.2774 0.6736 12 7 1.5220 2.1526 1.1738 13 6 1.7364 1.8320 2.4652 14 8 2.4938 0.9219 2.7490 15 6 1.0592 2.5773 3.5257 16 16 -0.0513 3.9149 3.2739 17 6 -0.3035 4.1144 4.9989 18 6 0.4084 3.2373 5.6963 19 6 1.2010 2.3394 4.8934 20 6 2.0262 1.3360 5.4292 21 1 2.2160 0.4346 4.8654 22 6 2.6036 1.5052 6.6968 23 7 3.1823 0.4959 7.2909 24 14 2.5449 3.1736 7.5347 25 1 1.3382 3.2523 8.3968 26 1 3.7610 3.3522 8.3679 27 1 2.4884 4.2427 6.5056 28 1 -0.3633 0.5895 0.8417 29 1 -0.3633 0.4341 -0.9315 30 1 -0.3632 -1.0238 0.0898 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.3370 1.0665 -2.8840 34 1 1.3079 2.5285 -4.5751 35 1 -0.0616 4.4508 -3.8707 36 1 -0.4070 4.9030 -1.4764 37 1 1.1481 4.2167 1.0305 38 1 -0.3051 3.1816 1.0153 39 1 -0.9510 4.8593 5.4375 40 1 0.3949 3.1994 6.7756 41 1 3.5818 0.6130 8.1671 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890616089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:53 Heat of formation + Delta-G solvation = 24.925341 kcal Electronic energy + Delta-G solvation = -25406.551160 eV Core-core repulsion = 21956.717398 eV Total energy + Delta-G solvation = -3449.833762 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.64806 -38.14758 -36.56001 -35.42685 -33.34012 -33.17806 -30.79267 -30.60396 -29.22793 -27.34483 -26.59831 -24.75768 -22.84125 -21.99518 -21.38368 -20.83519 -19.38172 -18.70049 -17.15248 -16.37746 -16.03230 -15.78692 -15.65767 -15.23136 -14.87486 -14.20518 -14.09793 -13.71590 -13.58397 -13.36803 -13.20061 -12.99626 -12.90476 -12.64489 -12.19340 -12.04382 -11.94095 -11.63231 -11.54129 -11.39004 -11.11410 -10.98491 -10.77092 -10.71208 -10.41626 -10.37935 -10.05561 -9.55457 -9.46190 -8.84071 -8.80223 -8.59489 -7.86238 -7.68271 -7.34980 -7.15056 -4.58628 1.31493 1.35250 1.84809 2.82971 2.86904 3.05108 3.09194 3.41480 3.46840 3.62646 3.71984 3.76852 4.29138 4.40951 4.66603 4.98148 4.98243 5.06924 5.26847 5.45560 5.46784 5.53503 5.60014 5.66525 5.73953 5.85440 5.89896 6.02726 6.03673 6.10577 6.15949 6.21885 6.35383 6.38479 6.44736 6.52721 6.59395 6.69444 6.76842 6.87951 6.93712 6.98232 7.25414 7.62608 8.21936 8.34175 8.42255 8.72003 9.43974 9.82114 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.020042 B = 0.004090 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.746491 B = 6844.222030 C = 7707.319196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.186 3.814 4 H 0.078 0.922 5 C -0.088 4.088 6 C -0.098 4.098 7 C -0.121 4.121 8 C -0.121 4.121 9 C -0.099 4.099 10 C -0.095 4.095 11 C 0.145 3.855 12 N -0.625 5.625 13 C 0.624 3.376 14 O -0.543 6.543 15 C -0.420 4.420 16 S -0.005 6.005 17 C -0.191 4.191 18 C -0.164 4.164 19 C 0.111 3.889 20 C -0.361 4.361 21 H 0.120 0.880 22 C 0.077 3.923 23 N -0.774 5.774 24 Si 0.909 3.091 25 H -0.265 1.265 26 H -0.283 1.283 27 H -0.240 1.240 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.142 0.858 40 H 0.123 0.877 41 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.240 6.084 -13.631 15.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C 0.082 3.918 4 H 0.096 0.904 5 C -0.089 4.089 6 C -0.116 4.116 7 C -0.139 4.139 8 C -0.139 4.139 9 C -0.118 4.118 10 C -0.096 4.096 11 C 0.020 3.980 12 N -0.362 5.362 13 C 0.423 3.577 14 O -0.424 6.424 15 C -0.539 4.539 16 S 0.253 5.747 17 C -0.325 4.325 18 C -0.197 4.197 19 C 0.100 3.900 20 C -0.391 4.391 21 H 0.138 0.862 22 C -0.147 4.147 23 N -0.397 5.397 24 Si 0.734 3.266 25 H -0.191 1.191 26 H -0.209 1.209 27 H -0.163 1.163 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.159 0.841 40 H 0.141 0.859 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.210 6.129 -14.386 16.482 hybrid contribution 0.399 0.100 1.765 1.812 sum -4.811 6.229 -12.621 14.874 Atomic orbital electron populations 1.21665 0.95646 1.01097 1.01627 1.21798 0.96666 0.95385 1.02778 1.19691 0.98089 0.91651 0.82371 0.90385 1.20393 0.98051 0.96284 0.94124 1.20461 1.00369 0.99873 0.90903 1.20999 0.98307 0.95554 0.99077 1.20994 0.99468 0.98061 0.95378 1.20481 1.00007 0.99228 0.92036 1.20429 0.97968 0.96031 0.95124 1.20180 0.97317 0.91665 0.88856 1.47804 1.53921 1.29801 1.04645 1.16308 0.80508 0.82669 0.78177 1.90734 1.38506 1.32232 1.80891 1.22381 1.23022 1.13148 0.95320 1.83062 1.50920 1.36726 1.04033 1.25196 1.05187 1.03438 0.98658 1.21451 1.00156 0.98496 0.99592 1.17876 0.92054 0.90604 0.89473 1.19749 1.18441 1.02702 0.98183 0.86236 1.26492 0.92940 0.98959 0.96294 1.69562 1.23952 1.32258 1.13894 0.86441 0.77699 0.82781 0.79629 1.19120 1.20925 1.16296 0.92239 0.93419 0.93271 0.91871 0.89904 0.86055 0.85907 0.85874 0.85870 0.90026 0.89855 0.84053 0.85935 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.48 37.16 0.35 -1.89 16 2 C -0.13 -2.08 5.62 -26.73 -0.15 -2.23 16 3 C 0.19 3.18 3.24 -68.97 -0.22 2.95 16 4 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 5 C -0.09 -1.26 4.35 -104.57 -0.45 -1.72 16 6 C -0.10 -1.15 10.04 -39.54 -0.40 -1.55 16 7 C -0.12 -1.23 10.05 -39.61 -0.40 -1.63 16 8 C -0.12 -1.23 10.05 -39.61 -0.40 -1.62 16 9 C -0.10 -1.16 10.05 -39.54 -0.40 -1.56 16 10 C -0.09 -1.36 6.22 -104.57 -0.65 -2.01 16 11 C 0.14 2.41 5.20 -5.08 -0.03 2.38 16 12 N -0.63 -12.31 2.17 -170.18 -0.37 -12.67 16 13 C 0.62 15.06 7.57 -13.05 -0.10 14.96 16 14 O -0.54 -14.83 13.80 5.14 0.07 -14.76 16 15 C -0.42 -10.17 6.45 -35.88 -0.23 -10.40 16 16 S -0.01 -0.10 18.68 -107.50 -2.01 -2.11 16 17 C -0.19 -3.75 11.07 28.86 0.32 -3.43 16 18 C -0.16 -3.66 7.38 -39.12 -0.29 -3.95 16 19 C 0.11 2.82 5.23 -106.21 -0.56 2.27 16 20 C -0.36 -9.90 8.92 -37.94 -0.34 -10.24 16 21 H 0.12 3.67 6.48 -52.49 -0.34 3.33 16 22 C 0.08 1.96 5.51 -17.28 -0.10 1.86 16 23 N -0.77 -19.97 13.92 55.57 0.77 -19.20 16 24 Si 0.91 19.41 24.49 -169.99 -4.16 15.24 16 25 H -0.27 -5.28 6.69 56.52 0.38 -4.91 16 26 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.24 -5.26 6.56 56.52 0.37 -4.89 16 28 H 0.06 1.07 7.42 -51.93 -0.39 0.69 16 29 H 0.05 0.69 7.42 -51.93 -0.39 0.30 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.59 7.04 -51.93 -0.37 1.23 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 34 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.08 1.38 7.31 -51.93 -0.38 1.00 16 38 H 0.08 1.40 6.58 -51.77 -0.34 1.06 16 39 H 0.14 2.27 8.06 -52.49 -0.42 1.84 16 40 H 0.12 2.60 4.61 -52.48 -0.24 2.36 16 41 H 0.29 6.68 8.29 -40.82 -0.34 6.34 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -29.37 339.67 -9.62 -38.99 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.01 Total: 7.19 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -4.03 Total: -17.80 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.40 Total: -31.88 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.07 Total: -14.76 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.16 Total: 15.24 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -2.01 Total: -2.11 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.37 -9.62 -38.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890616089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.917 kcal (2) G-P(sol) polarization free energy of solvation -29.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds