Wall clock time and date at job start Tue Mar 31 2020 14:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46788 * 2 1 4 4 H 1.09002 * 109.85804 * 179.18254 * 3 2 1 5 5 C 1.50781 * 109.81040 * 300.05778 * 3 2 1 6 6 C 1.38437 * 131.20183 * 299.52237 * 5 3 2 7 7 C 1.38149 * 120.10280 * 180.02562 * 6 5 3 8 8 C 1.38247 * 119.96064 * 0.02562 * 7 6 5 9 9 C 1.38138 * 119.96531 * 0.02562 * 8 7 6 10 10 C 1.38061 * 108.86269 * 119.55112 * 5 3 2 11 11 C 1.50781 * 108.86112 * 359.97438 * 10 5 3 12 12 N 1.46630 * 107.70241 * 0.02562 * 11 10 5 13 13 C 1.34776 * 126.56582 * 180.02562 * 12 11 10 14 14 O 1.21759 * 120.00404 * 184.94683 * 13 12 11 15 15 C 1.46238 * 119.99797 * 4.94158 * 13 12 11 16 16 S 1.75667 * 125.22995 * 359.69805 * 15 13 12 17 17 C 1.75473 * 92.09396 * 179.97438 * 16 15 13 18 18 C 1.32763 * 111.36056 * 0.35316 * 17 16 15 19 19 C 1.39551 * 125.22665 * 180.02562 * 15 13 12 20 20 C 1.40530 * 123.71393 * 359.97438 * 19 15 13 21 21 H 1.07999 * 120.00318 * 330.84402 * 20 19 15 22 22 C 1.40308 * 119.99891 * 150.85241 * 20 19 15 23 23 N 1.30639 * 120.00027 * 168.59177 * 22 20 19 24 24 Si 1.86800 * 120.00130 * 348.58349 * 22 20 19 25 25 H 1.48507 * 109.46681 * 92.09565 * 24 22 20 26 26 H 1.48497 * 109.47259 * 212.09693 * 24 22 20 27 27 H 1.48498 * 109.46869 * 332.10046 * 24 22 20 28 28 H 1.08994 * 109.47011 * 305.00491 * 1 2 3 29 29 H 1.09000 * 109.47083 * 65.01062 * 1 2 3 30 30 H 1.09000 * 109.46583 * 185.01009 * 1 2 3 31 31 H 1.08990 * 109.47075 * 239.99985 * 2 1 3 32 32 H 1.09004 * 109.47115 * 119.99656 * 2 1 3 33 33 H 1.08000 * 119.95160 * 0.05026 * 6 5 3 34 34 H 1.08005 * 120.01910 * 180.29746 * 7 6 5 35 35 H 1.08000 * 120.01602 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.95415 * 179.97438 * 9 8 7 37 37 H 1.09004 * 109.80739 * 119.55104 * 11 10 5 38 38 H 1.08996 * 109.81583 * 240.45232 * 11 10 5 39 39 H 1.08001 * 124.31944 * 180.02562 * 17 16 15 40 40 H 1.08004 * 122.78262 * 179.70912 * 18 17 16 41 41 H 0.97005 * 119.99888 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1299 1.4500 0.0146 5 6 1.5404 2.1611 -1.2278 6 6 1.7348 1.9081 -2.5749 7 6 1.1593 2.7300 -3.5245 8 6 0.3884 3.8074 -3.1291 9 6 0.1949 4.0611 -1.7851 10 6 0.7702 3.2368 -0.8330 11 6 0.7255 3.2774 0.6736 12 7 1.5220 2.1526 1.1738 13 6 1.7364 1.8320 2.4652 14 8 2.4938 0.9219 2.7490 15 6 1.0592 2.5773 3.5257 16 16 -0.0513 3.9149 3.2739 17 6 -0.3035 4.1144 4.9989 18 6 0.4084 3.2373 5.6963 19 6 1.2010 2.3394 4.8934 20 6 2.0262 1.3360 5.4292 21 1 2.2160 0.4346 4.8654 22 6 2.6036 1.5052 6.6968 23 7 3.1823 0.4959 7.2909 24 14 2.5449 3.1736 7.5347 25 1 1.3382 3.2523 8.3968 26 1 3.7610 3.3522 8.3679 27 1 2.4884 4.2427 6.5056 28 1 -0.3633 0.5895 0.8417 29 1 -0.3633 0.4341 -0.9315 30 1 -0.3632 -1.0238 0.0898 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.3370 1.0665 -2.8840 34 1 1.3079 2.5285 -4.5751 35 1 -0.0616 4.4508 -3.8707 36 1 -0.4070 4.9030 -1.4764 37 1 1.1481 4.2167 1.0305 38 1 -0.3051 3.1816 1.0153 39 1 -0.9510 4.8593 5.4375 40 1 0.3949 3.1994 6.7756 41 1 3.5818 0.6130 8.1671 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890616089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:52 Heat of formation + Delta-G solvation = 8.566870 kcal Electronic energy + Delta-G solvation = -25407.260517 eV Core-core repulsion = 21956.717398 eV Total energy + Delta-G solvation = -3450.543118 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.91216 -39.73312 -38.15692 -37.03268 -35.20855 -34.52601 -32.06552 -31.63609 -30.98530 -28.85890 -28.14523 -26.17293 -24.08499 -23.66514 -22.44006 -22.26489 -20.88603 -20.47847 -18.79568 -17.95568 -17.41002 -17.19891 -17.10592 -16.68035 -16.29019 -15.44245 -15.37291 -15.28869 -15.16308 -15.02452 -14.62469 -14.45714 -14.14855 -13.95692 -13.76394 -13.58076 -13.32395 -13.20315 -12.95753 -12.67652 -12.63950 -12.47415 -12.26608 -12.11321 -11.96586 -11.80795 -11.58162 -11.29404 -11.13736 -10.53393 -10.02681 -9.73683 -9.52367 -9.27571 -9.07368 -9.00583 -6.54397 0.07610 0.37026 0.45894 1.16266 1.19301 1.33627 1.42013 1.58153 1.67474 2.03630 2.08101 2.40484 2.80642 3.12810 3.29849 3.45678 3.89895 4.10666 4.14499 4.18154 4.25122 4.28584 4.37390 4.42390 4.48672 4.57847 4.63952 4.69365 4.78762 4.80457 4.91052 4.97171 4.97936 5.06680 5.15594 5.18778 5.24646 5.28464 5.49648 5.52834 5.61345 5.70594 5.82670 6.07622 6.17400 6.45774 6.55455 6.79972 7.57032 8.02441 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.020042 B = 0.004090 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.746491 B = 6844.222030 C = 7707.319196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.124 4.124 3 C 0.179 3.821 4 H 0.058 0.942 5 C -0.103 4.103 6 C -0.101 4.101 7 C -0.112 4.112 8 C -0.111 4.111 9 C -0.099 4.099 10 C -0.113 4.113 11 C 0.144 3.856 12 N -0.624 5.624 13 C 0.613 3.387 14 O -0.591 6.591 15 C -0.451 4.451 16 S 0.070 5.930 17 C -0.170 4.170 18 C -0.198 4.198 19 C 0.100 3.900 20 C -0.411 4.411 21 H 0.061 0.939 22 C 0.038 3.962 23 N -0.822 5.822 24 Si 0.972 3.028 25 H -0.233 1.233 26 H -0.271 1.271 27 H -0.247 1.247 28 H 0.028 0.972 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.039 0.961 33 H 0.137 0.863 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.144 0.856 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.193 0.807 40 H 0.136 0.864 41 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.793 9.917 -16.544 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 C 0.076 3.924 4 H 0.076 0.924 5 C -0.104 4.104 6 C -0.119 4.119 7 C -0.129 4.129 8 C -0.129 4.129 9 C -0.117 4.117 10 C -0.114 4.114 11 C 0.020 3.980 12 N -0.358 5.358 13 C 0.411 3.589 14 O -0.476 6.476 15 C -0.570 4.570 16 S 0.329 5.671 17 C -0.304 4.304 18 C -0.230 4.230 19 C 0.089 3.911 20 C -0.442 4.442 21 H 0.079 0.921 22 C -0.181 4.181 23 N -0.447 5.447 24 Si 0.793 3.207 25 H -0.158 1.158 26 H -0.197 1.197 27 H -0.171 1.171 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.057 0.943 33 H 0.155 0.845 34 H 0.175 0.825 35 H 0.177 0.823 36 H 0.162 0.838 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.210 0.790 40 H 0.153 0.847 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.794 9.970 -17.355 21.479 hybrid contribution 1.115 -1.058 2.278 2.748 sum -6.678 8.912 -15.077 18.744 Atomic orbital electron populations 1.21555 0.94765 1.01299 1.01251 1.21741 0.97334 0.95059 1.02098 1.19798 0.97128 0.92364 0.83143 0.92422 1.20145 0.99579 0.96649 0.94001 1.20729 1.00567 1.00850 0.89800 1.21441 0.96642 0.94477 1.00356 1.21456 0.98257 0.97969 0.95215 1.20780 0.99533 0.99112 0.92254 1.20291 0.99991 0.97493 0.93582 1.20252 0.96396 0.90045 0.91278 1.47675 1.53380 1.30691 1.04090 1.16587 0.80174 0.82223 0.79866 1.90706 1.40450 1.34194 1.82227 1.22987 1.23817 1.14719 0.95482 1.82684 1.47718 1.32865 1.03805 1.25848 1.03413 1.02541 0.98582 1.21377 1.01639 0.99701 1.00306 1.18214 0.91519 0.90756 0.90635 1.19507 1.22439 1.02558 0.99722 0.92096 1.27326 0.91796 1.02848 0.96083 1.69598 1.25728 1.34352 1.15001 0.85503 0.79361 0.77191 0.78675 1.15754 1.19748 1.17064 0.95287 0.91324 0.92297 0.88752 0.94254 0.84530 0.82468 0.82290 0.83789 0.90366 0.90021 0.78998 0.84676 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 9.48 71.98 0.68 -3.50 16 2 C -0.12 -4.26 5.62 30.60 0.17 -4.09 16 3 C 0.18 6.42 3.24 44.25 0.14 6.56 16 4 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 5 C -0.10 -2.84 4.35 -19.83 -0.09 -2.93 16 6 C -0.10 -2.08 10.04 22.30 0.22 -1.85 16 7 C -0.11 -1.70 10.05 22.25 0.22 -1.47 16 8 C -0.11 -1.65 10.05 22.25 0.22 -1.42 16 9 C -0.10 -1.92 10.05 22.30 0.22 -1.69 16 10 C -0.11 -3.03 6.22 -19.83 -0.12 -3.15 16 11 C 0.14 4.77 5.20 85.63 0.45 5.21 16 12 N -0.62 -25.88 2.17 -810.51 -1.76 -27.64 16 13 C 0.61 31.94 7.57 86.32 0.65 32.59 16 14 O -0.59 -36.05 13.80 -4.54 -0.06 -36.11 16 15 C -0.45 -22.77 6.45 24.67 0.16 -22.61 16 16 S 0.07 2.63 18.68 -56.49 -1.06 1.58 16 17 C -0.17 -6.10 11.07 66.64 0.74 -5.37 16 18 C -0.20 -8.63 7.38 22.61 0.17 -8.46 16 19 C 0.10 5.35 5.23 -20.89 -0.11 5.24 16 20 C -0.41 -24.72 8.92 23.33 0.21 -24.51 16 21 H 0.06 4.25 6.48 -2.91 -0.02 4.23 16 22 C 0.04 2.07 5.51 85.37 0.47 2.54 16 23 N -0.82 -45.68 13.92 21.89 0.30 -45.37 16 24 Si 0.97 40.56 24.49 68.60 1.68 42.24 16 25 H -0.23 -8.48 6.69 99.48 0.67 -7.82 16 26 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 27 H -0.25 -10.48 6.56 99.48 0.65 -9.83 16 28 H 0.03 1.07 7.42 -2.39 -0.02 1.05 16 29 H 0.07 1.88 7.42 -2.39 -0.02 1.87 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.04 1.68 7.04 -2.38 -0.02 1.66 16 33 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 36 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.08 2.59 7.31 -2.38 -0.02 2.57 16 38 H 0.08 2.68 6.58 -2.49 -0.02 2.67 16 39 H 0.19 4.98 8.06 -2.91 -0.02 4.95 16 40 H 0.14 5.49 4.61 -2.91 -0.01 5.47 16 41 H 0.30 14.70 8.29 -92.70 -0.77 13.93 16 Total: -1.00 -74.39 339.67 4.48 -69.91 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.96 Total: 24.32 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 4.41 Total: -28.92 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -1.45 Total: -73.02 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.06 Total: -36.11 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.68 Total: 42.24 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.06 Total: 1.58 kcal Total: -74.39 4.48 -69.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890616089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.473 kcal (2) G-P(sol) polarization free energy of solvation -74.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds