Wall clock time and date at job start Tue Mar 31 2020 14:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47151 * 2 1 4 4 H 1.09001 * 109.80565 * 178.80772 * 3 2 1 5 5 C 1.50768 * 109.87060 * 57.92567 * 3 2 1 6 6 C 1.38451 * 131.20805 * 60.38438 * 5 3 2 7 7 C 1.38138 * 120.10626 * 180.02562 * 6 5 3 8 8 C 1.38250 * 119.96386 * 359.97438 * 7 6 5 9 9 C 1.38145 * 119.96121 * 0.20992 * 8 7 6 10 10 C 1.38067 * 108.86558 * 240.42001 * 5 3 2 11 11 C 1.50781 * 108.86033 * 0.02562 * 10 5 3 12 12 N 1.46634 * 109.81048 * 299.64042 * 3 2 1 13 13 C 1.34779 * 126.56768 * 299.64538 * 12 3 2 14 14 O 1.21761 * 119.99611 * 355.05690 * 13 12 3 15 15 C 1.46236 * 120.00469 * 175.06678 * 13 12 3 16 16 S 1.75669 * 125.22339 * 359.68625 * 15 13 12 17 17 C 1.75481 * 92.09070 * 179.97438 * 16 15 13 18 18 C 1.32771 * 111.35637 * 0.32439 * 17 16 15 19 19 C 1.39542 * 125.23152 * 179.97438 * 15 13 12 20 20 C 1.40545 * 123.71112 * 359.97438 * 19 15 13 21 21 H 1.08002 * 120.00172 * 24.99317 * 20 19 15 22 22 C 1.40310 * 119.99845 * 204.98783 * 20 19 15 23 23 N 1.30634 * 119.99700 * 7.64692 * 22 20 19 24 24 Si 1.86792 * 120.00016 * 187.64771 * 22 20 19 25 25 H 1.48504 * 109.47053 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47391 * 119.99951 * 24 22 20 27 27 H 1.48498 * 109.47304 * 240.00511 * 24 22 20 28 28 H 1.09001 * 109.47508 * 184.83010 * 1 2 3 29 29 H 1.09006 * 109.47421 * 304.83166 * 1 2 3 30 30 H 1.08998 * 109.47400 * 64.82905 * 1 2 3 31 31 H 1.08996 * 109.47664 * 239.99368 * 2 1 3 32 32 H 1.08999 * 109.46866 * 119.99470 * 2 1 3 33 33 H 1.07997 * 119.94208 * 0.04462 * 6 5 3 34 34 H 1.08001 * 120.02165 * 179.97438 * 7 6 5 35 35 H 1.08003 * 120.01933 * 179.97438 * 8 7 6 36 36 H 1.08005 * 119.94837 * 179.75283 * 9 8 7 37 37 H 1.08998 * 109.81652 * 119.54541 * 11 10 5 38 38 H 1.09001 * 109.81021 * 240.45663 * 11 10 5 39 39 H 1.07994 * 124.31872 * 180.08518 * 17 16 15 40 40 H 1.08004 * 122.77586 * 179.73514 * 18 17 16 41 41 H 0.96999 * 120.00149 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1297 1.4489 0.0213 5 6 1.5009 2.1766 1.2015 6 6 1.6492 1.9396 2.5575 7 6 1.0430 2.7732 3.4770 8 6 0.2872 3.8465 3.0431 9 6 0.1356 4.0814 1.6902 10 6 0.7455 3.2480 0.7682 11 6 0.7506 3.2700 -0.7395 12 7 1.5623 2.1385 -1.1990 13 6 1.8192 1.8020 -2.4786 14 8 2.5838 0.8872 -2.7258 15 6 1.1798 2.5356 -3.5702 16 16 0.0526 3.8683 -3.3716 17 6 -0.1321 4.0550 -5.1066 18 6 0.6009 3.1681 -5.7691 19 6 1.3668 2.2810 -4.9293 20 6 2.2083 1.2703 -5.4250 21 1 2.4315 0.4066 -4.8163 22 6 2.7583 1.3834 -6.7109 23 7 2.6124 2.4906 -7.3886 24 14 3.6991 -0.0493 -7.4536 25 1 3.7223 -1.1790 -6.4899 26 1 3.0328 -0.4819 -8.7082 27 1 5.0907 0.3741 -7.7526 28 1 -0.3634 -1.0240 0.0865 29 1 -0.3634 0.5870 0.8436 30 1 -0.3634 0.4371 -0.9300 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 2.2401 1.1017 2.8967 34 1 1.1592 2.5868 4.5345 35 1 -0.1875 4.4986 3.7612 36 1 -0.4581 4.9176 1.3513 37 1 -0.2682 3.1707 -1.1140 38 1 1.1861 4.2043 -1.0938 39 1 -0.7645 4.7943 -5.5756 40 1 0.6218 3.1157 -6.8477 41 1 2.9929 2.5690 -8.2774 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890616090.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:55 Heat of formation + Delta-G solvation = 5.012700 kcal Electronic energy + Delta-G solvation = -25334.978560 eV Core-core repulsion = 21884.281321 eV Total energy + Delta-G solvation = -3450.697239 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.88556 -39.65965 -38.01158 -36.97387 -34.92224 -34.50957 -32.02643 -31.61105 -30.78793 -28.66845 -27.96736 -26.13756 -24.11606 -23.75499 -22.39283 -21.97856 -20.68199 -20.44410 -18.68488 -17.89002 -17.26961 -17.16935 -17.04284 -16.66134 -16.18031 -15.51002 -15.33595 -15.27016 -15.02116 -14.62542 -14.40971 -14.21583 -14.10865 -13.86198 -13.69015 -13.41190 -13.19548 -13.16344 -12.93346 -12.78715 -12.62466 -12.41869 -12.20462 -12.05568 -12.01664 -11.87786 -11.57449 -11.34650 -10.99107 -10.43129 -9.99320 -9.73538 -9.42805 -9.22016 -8.90934 -8.86732 -6.47289 0.28155 0.37463 0.45887 1.31078 1.32171 1.38958 1.47826 1.76387 1.94713 2.13022 2.16094 2.47368 2.80774 3.27688 3.31738 3.47830 3.92435 4.12879 4.16176 4.26014 4.28517 4.33541 4.44142 4.49531 4.54367 4.61064 4.69448 4.81758 4.83450 4.94232 4.97843 4.98560 5.08569 5.17105 5.25607 5.27187 5.37750 5.48951 5.52684 5.59018 5.61766 5.73399 5.88082 6.07767 6.35558 6.54864 6.69418 6.86950 7.62087 8.06811 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.018394 B = 0.004032 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.843555 B = 6943.076000 C = 8032.261800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.123 4.123 3 C 0.179 3.821 4 H 0.059 0.941 5 C -0.102 4.102 6 C -0.100 4.100 7 C -0.111 4.111 8 C -0.112 4.112 9 C -0.101 4.101 10 C -0.115 4.115 11 C 0.147 3.853 12 N -0.624 5.624 13 C 0.616 3.384 14 O -0.594 6.594 15 C -0.463 4.463 16 S 0.027 5.973 17 C -0.207 4.207 18 C -0.129 4.129 19 C 0.115 3.885 20 C -0.417 4.417 21 H 0.082 0.918 22 C 0.036 3.964 23 N -0.795 5.795 24 Si 0.989 3.011 25 H -0.271 1.271 26 H -0.246 1.246 27 H -0.259 1.259 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.023 0.977 31 H 0.043 0.957 32 H 0.095 0.905 33 H 0.140 0.860 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.141 0.859 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.173 0.827 40 H 0.139 0.861 41 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.201 2.699 15.581 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.161 4.161 3 C 0.076 3.924 4 H 0.077 0.923 5 C -0.103 4.103 6 C -0.118 4.118 7 C -0.129 4.129 8 C -0.129 4.129 9 C -0.119 4.119 10 C -0.115 4.115 11 C 0.023 3.977 12 N -0.358 5.358 13 C 0.416 3.584 14 O -0.479 6.479 15 C -0.582 4.582 16 S 0.283 5.717 17 C -0.341 4.341 18 C -0.161 4.161 19 C 0.104 3.896 20 C -0.448 4.448 21 H 0.100 0.900 22 C -0.184 4.184 23 N -0.419 5.419 24 Si 0.809 3.191 25 H -0.195 1.195 26 H -0.170 1.170 27 H -0.183 1.183 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.157 0.843 34 H 0.177 0.823 35 H 0.177 0.823 36 H 0.159 0.841 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.191 0.809 40 H 0.156 0.844 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.351 3.084 16.326 17.455 hybrid contribution 1.173 -1.124 -2.259 2.783 sum -4.178 1.960 14.067 14.804 Atomic orbital electron populations 1.21560 0.94901 1.01692 1.00710 1.21739 0.97172 0.94897 1.02333 1.19817 0.97386 0.92551 0.82678 0.92288 1.20175 0.99430 0.96482 0.94216 1.20740 1.00460 1.00852 0.89758 1.21446 0.96504 0.94326 1.00605 1.21450 0.98553 0.98144 0.94769 1.20774 0.99403 0.99057 0.92698 1.20310 1.00055 0.97641 0.93525 1.20182 0.96026 0.89901 0.91586 1.47651 1.53427 1.30521 1.04243 1.16515 0.79919 0.82126 0.79875 1.90622 1.39999 1.33960 1.83315 1.22976 1.24471 1.15196 0.95523 1.82561 1.49548 1.35493 1.04075 1.25723 1.05590 1.04343 0.98428 1.21568 0.96914 0.96711 1.00901 1.18357 0.90544 0.91119 0.89625 1.20012 1.21347 1.04602 0.98812 0.90014 1.27038 0.95922 0.99561 0.95898 1.69650 1.33780 1.26146 1.12341 0.85046 0.78302 0.77286 0.78479 1.19501 1.17008 1.18347 0.91665 0.91718 0.95766 0.93782 0.88680 0.84267 0.82334 0.82332 0.84137 0.90448 0.90992 0.80941 0.84394 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.51 71.98 0.68 -3.46 16 2 C -0.12 -4.14 5.65 30.59 0.17 -3.97 16 3 C 0.18 6.44 3.23 44.24 0.14 6.59 16 4 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 5 C -0.10 -2.90 4.08 -19.83 -0.08 -2.98 16 6 C -0.10 -2.08 10.04 22.30 0.22 -1.86 16 7 C -0.11 -1.76 10.05 22.25 0.22 -1.53 16 8 C -0.11 -1.78 10.05 22.25 0.22 -1.55 16 9 C -0.10 -2.15 10.05 22.30 0.22 -1.92 16 10 C -0.11 -3.27 6.22 -19.83 -0.12 -3.40 16 11 C 0.15 5.24 5.21 85.63 0.45 5.69 16 12 N -0.62 -26.62 2.44 -810.51 -1.98 -28.59 16 13 C 0.62 32.52 7.56 86.32 0.65 33.17 16 14 O -0.59 -35.07 13.69 -4.54 -0.06 -35.13 16 15 C -0.46 -24.62 6.45 24.66 0.16 -24.46 16 16 S 0.03 1.13 18.68 -56.49 -1.06 0.07 16 17 C -0.21 -8.89 11.07 66.64 0.74 -8.15 16 18 C -0.13 -6.44 9.04 22.60 0.20 -6.24 16 19 C 0.11 6.46 5.67 -20.89 -0.12 6.35 16 20 C -0.42 -23.99 8.48 23.34 0.20 -23.80 16 21 H 0.08 5.05 6.10 -2.91 -0.02 5.03 16 22 C 0.04 1.80 5.41 85.38 0.46 2.26 16 23 N -0.79 -39.41 10.81 21.89 0.24 -39.17 16 24 Si 0.99 39.38 29.57 68.60 2.03 41.40 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 26 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 27 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 1.83 7.00 -2.38 -0.02 1.82 16 30 H 0.02 0.90 7.78 -2.39 -0.02 0.88 16 31 H 0.04 1.81 6.98 -2.39 -0.02 1.80 16 32 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 37 H 0.08 2.80 6.56 -2.54 -0.02 2.79 16 38 H 0.07 2.65 7.33 -2.39 -0.02 2.63 16 39 H 0.17 5.95 8.06 -2.91 -0.02 5.93 16 40 H 0.14 6.90 6.42 -2.91 -0.02 6.89 16 41 H 0.30 13.06 8.29 -92.71 -0.77 12.29 16 Total: -1.00 -69.10 345.45 4.66 -64.45 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 1.05 Total: 26.23 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 4.43 Total: -29.27 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: -1.74 Total: -67.77 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -0.06 Total: -35.13 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.40 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -1.06 Total: 0.07 kcal Total: -69.10 4.66 -64.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890616090.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.460 kcal (2) G-P(sol) polarization free energy of solvation -69.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds