Wall clock time and date at job start Tue Mar 31 2020 15:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47205 * 179.97438 * 4 3 2 6 6 N 1.31784 * 119.07910 * 89.99567 * 5 4 3 7 7 C 1.32660 * 120.98686 * 179.97438 * 6 5 4 8 8 Cl 1.73606 * 120.41359 * 179.97438 * 7 6 5 9 9 C 1.38314 * 119.16843 * 0.02562 * 7 6 5 10 10 C 1.39529 * 118.32062 * 359.97438 * 9 7 6 11 11 N 1.38556 * 120.51981 * 179.97438 * 10 9 7 12 12 C 1.47902 * 111.00072 * 59.87135 * 11 10 9 13 13 C 1.53990 * 107.06278 * 214.15213 * 12 11 10 14 14 C 1.54601 * 105.13856 * 1.22768 * 13 12 11 15 15 O 1.42903 * 110.72310 * 263.59876 * 14 13 12 16 16 C 1.50699 * 110.72568 * 140.48962 * 14 13 12 17 17 H 1.08002 * 120.00140 * 241.45405 * 16 14 13 18 18 C 1.37882 * 119.99828 * 61.45463 * 16 14 13 19 19 N 1.31511 * 120.00080 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99879 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47236 * 90.00198 * 20 18 16 22 22 H 1.48496 * 109.46852 * 210.00102 * 20 18 16 23 23 H 1.48504 * 109.47108 * 329.99940 * 20 18 16 24 24 C 1.48531 * 111.00134 * 302.47979 * 11 10 9 25 25 N 1.31749 * 119.07430 * 269.73074 * 5 4 3 26 26 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 31 31 H 1.09001 * 109.46918 * 299.99649 * 4 3 2 32 32 H 1.08999 * 109.46857 * 59.99535 * 4 3 2 33 33 H 1.08004 * 120.84004 * 180.02562 * 9 7 6 34 34 H 1.09002 * 109.91900 * 333.51229 * 12 11 10 35 35 H 1.09007 * 109.91524 * 94.60424 * 12 11 10 36 36 H 1.08997 * 110.30762 * 120.13888 * 13 12 11 37 37 H 1.08996 * 110.31226 * 242.21287 * 13 12 11 38 38 H 0.96695 * 114.00049 * 298.54565 * 15 14 13 39 39 H 0.96998 * 120.00132 * 179.97438 * 19 18 16 40 40 H 1.09006 * 110.66201 * 278.15162 * 24 11 10 41 41 H 1.08989 * 110.66966 * 41.28169 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9161 -0.0012 6 7 3.9850 3.5353 1.1503 7 6 4.3274 4.8162 1.1940 8 17 4.5409 5.6174 2.7192 9 6 4.5111 5.5056 0.0091 10 6 4.3276 4.8189 -1.1916 11 7 4.4993 5.4652 -2.4052 12 6 5.8753 5.9914 -2.5355 13 6 5.7828 7.3062 -3.3318 14 6 4.2753 7.5028 -3.6127 15 8 3.9351 7.0149 -4.9121 16 6 3.8914 8.9533 -3.4725 17 1 3.1670 9.2508 -2.7287 18 6 4.4651 9.9007 -4.2937 19 7 5.3476 9.5386 -5.1990 20 14 3.9888 11.6986 -4.1203 21 1 4.8924 12.3582 -3.1438 22 1 4.1087 12.3717 -5.4386 23 1 2.5866 11.7952 -3.6409 24 6 3.6030 6.6448 -2.5115 25 7 3.9894 3.5329 -1.1529 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8340 0.9764 0.8892 32 1 3.8333 0.9766 -0.8908 33 1 4.7904 6.5489 0.0131 34 1 6.2943 6.1842 -1.5478 35 1 6.4984 5.2737 -3.0692 36 1 6.1684 8.1355 -2.7390 37 1 6.3355 7.2215 -4.2674 38 1 4.3910 7.4684 -5.6342 39 1 5.7509 10.2051 -5.7769 40 1 2.6020 6.3410 -2.8181 41 1 3.5688 7.1884 -1.5675 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894348736.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:02 Heat of formation + Delta-G solvation = -33.173360 kcal Electronic energy + Delta-G solvation = -25592.220229 eV Core-core repulsion = 21726.974149 eV Total energy + Delta-G solvation = -3865.246080 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37085 -38.80945 -38.05080 -36.97439 -35.30020 -33.31366 -32.52344 -32.21320 -31.14139 -29.14238 -28.29399 -27.45662 -25.08847 -23.56015 -23.00489 -22.88877 -20.58096 -19.74306 -18.18945 -17.72136 -17.03300 -16.68352 -16.11624 -15.75352 -15.43358 -15.06736 -14.96024 -14.79229 -14.39582 -13.94850 -13.53553 -13.29596 -12.96589 -12.64681 -12.60063 -12.34876 -12.13512 -11.89010 -11.71815 -11.59027 -11.43394 -11.40807 -11.21202 -10.97055 -10.86054 -10.66041 -10.50305 -10.27809 -10.03075 -9.85924 -9.57377 -9.49770 -9.29515 -8.69414 -8.28893 -8.13990 -6.30598 -4.39652 0.58603 0.81040 1.45847 3.03284 3.17008 3.25437 3.28850 3.45472 3.71858 4.10338 4.23625 4.55334 4.60235 4.82477 4.91915 4.95984 4.98265 5.09329 5.14530 5.21098 5.38637 5.40705 5.46814 5.63628 5.69651 5.70496 5.86051 5.91580 5.93409 6.17990 6.33988 6.63870 6.69441 6.83180 6.91370 7.04078 7.29689 7.32878 7.40266 7.70478 8.00204 8.03240 8.62837 9.29765 9.44733 10.76587 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.003263 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.606408 B = 8578.238592 C = 9608.269936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.379 6.379 4 C 0.139 3.861 5 C 0.345 3.655 6 N -0.513 5.513 7 C 0.229 3.771 8 Cl -0.017 7.017 9 C -0.237 4.237 10 C 0.385 3.615 11 N -0.477 5.477 12 C 0.044 3.956 13 C -0.129 4.129 14 C 0.262 3.738 15 O -0.577 6.577 16 C -0.541 4.541 17 H 0.063 0.937 18 C 0.073 3.927 19 N -0.892 5.892 20 Si 0.901 3.099 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.060 3.940 25 N -0.483 5.483 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.161 0.839 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.380 0.620 39 H 0.268 0.732 40 H 0.083 0.917 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.880 -13.427 11.361 17.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.298 6.298 4 C 0.061 3.939 5 C 0.076 3.924 6 N -0.231 5.231 7 C 0.057 3.943 8 Cl 0.011 6.989 9 C -0.264 4.264 10 C 0.145 3.855 11 N -0.200 5.200 12 C -0.082 4.082 13 C -0.168 4.168 14 C 0.221 3.779 15 O -0.386 6.386 16 C -0.579 4.579 17 H 0.081 0.919 18 C -0.130 4.130 19 N -0.531 5.531 20 Si 0.728 3.272 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.065 4.065 25 N -0.199 5.199 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.179 0.821 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.229 0.771 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.616 -14.878 11.276 18.738 hybrid contribution 0.832 2.729 0.635 2.923 sum -0.784 -12.149 11.911 17.032 Atomic orbital electron populations 1.21743 0.93524 1.02233 1.03413 1.22500 0.95778 0.83077 1.00335 1.87951 1.19181 1.27095 1.95535 1.20874 0.82899 0.87580 1.02569 1.22502 0.91769 0.96226 0.81928 1.67523 1.15271 1.08911 1.31398 1.21835 0.94475 0.89987 0.88032 1.98426 1.94670 1.76393 1.29386 1.23456 1.05747 1.04400 0.92772 1.20456 0.86724 0.88853 0.89430 1.61755 1.06975 1.26400 1.24823 1.23135 0.86837 0.98635 0.99578 1.23007 1.01466 0.92511 0.99791 1.19281 0.87856 0.89965 0.80784 1.86162 1.71536 1.64227 1.16628 1.21521 1.25429 0.91290 1.19671 0.91897 1.24982 0.93969 0.99521 0.94491 1.69717 1.27783 1.34837 1.20753 0.86450 0.79136 0.83993 0.77607 1.20511 1.20973 1.19693 1.23474 0.96556 0.87229 0.99229 1.67981 1.12706 1.09774 1.29469 0.91612 0.90968 0.91840 0.92909 0.93120 0.90305 0.89922 0.82114 0.94282 0.90636 0.91251 0.90614 0.77054 0.92174 0.89893 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.86 16 2 C 0.06 0.54 6.66 37.16 0.25 0.79 16 3 O -0.38 -5.01 10.33 -35.23 -0.36 -5.37 16 4 C 0.14 1.70 6.37 36.00 0.23 1.93 16 5 C 0.35 5.43 7.27 -157.24 -1.14 4.28 16 6 N -0.51 -8.03 10.33 -7.93 -0.08 -8.11 16 7 C 0.23 3.46 7.33 -17.17 -0.13 3.33 16 8 Cl -0.02 -0.22 29.15 -51.86 -1.51 -1.73 16 9 C -0.24 -3.76 7.79 -39.07 -0.30 -4.07 16 10 C 0.38 6.94 5.88 -154.76 -0.91 6.03 16 11 N -0.48 -9.42 5.35 -169.08 -0.90 -10.32 16 12 C 0.04 0.82 6.52 -2.76 -0.02 0.80 16 13 C -0.13 -2.76 5.26 -25.37 -0.13 -2.89 16 14 C 0.26 6.18 0.95 -89.91 -0.09 6.09 16 15 O -0.58 -14.65 13.09 -35.23 -0.46 -15.11 16 16 C -0.54 -13.70 8.15 -34.44 -0.28 -13.98 16 17 H 0.06 1.58 7.78 -52.49 -0.41 1.17 16 18 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 19 N -0.89 -22.66 11.00 55.43 0.61 -22.05 16 20 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 24 C 0.06 1.27 5.55 -1.90 -0.01 1.26 16 25 N -0.48 -8.64 10.37 -9.98 -0.10 -8.74 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.16 2.37 7.17 -52.48 -0.38 1.99 16 34 H 0.04 0.65 6.71 -51.93 -0.35 0.30 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.07 1.52 7.84 -51.93 -0.41 1.11 16 37 H 0.08 1.70 7.98 -51.93 -0.41 1.29 16 38 H 0.38 9.64 7.46 45.56 0.34 9.98 16 39 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 40 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 41 H 0.06 1.13 6.59 -51.94 -0.34 0.78 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -28.12 356.88 -9.60 -37.72 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -4.90 Total: 9.06 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -2.25 Total: 4.47 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -0.48 Total: -49.23 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.82 Total: -20.49 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.51 Total: -1.73 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.12 -9.60 -37.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894348736.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.548 kcal (2) G-P(sol) polarization free energy of solvation -28.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds