Wall clock time and date at job start Tue Mar 31 2020 15:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47205 * 179.97438 * 4 3 2 6 6 N 1.31784 * 119.07910 * 89.99567 * 5 4 3 7 7 C 1.32660 * 120.98686 * 179.97438 * 6 5 4 8 8 Cl 1.73606 * 120.41359 * 179.97438 * 7 6 5 9 9 C 1.38314 * 119.16843 * 0.02562 * 7 6 5 10 10 C 1.39529 * 118.32062 * 359.97438 * 9 7 6 11 11 N 1.38556 * 120.51981 * 179.97438 * 10 9 7 12 12 C 1.47902 * 111.00072 * 59.87135 * 11 10 9 13 13 C 1.53990 * 107.06278 * 214.15213 * 12 11 10 14 14 C 1.54601 * 105.13856 * 1.22768 * 13 12 11 15 15 O 1.42903 * 110.72310 * 263.59876 * 14 13 12 16 16 C 1.50699 * 110.72568 * 140.48962 * 14 13 12 17 17 H 1.08002 * 120.00140 * 241.45405 * 16 14 13 18 18 C 1.37882 * 119.99828 * 61.45463 * 16 14 13 19 19 N 1.31511 * 120.00080 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99879 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47236 * 90.00198 * 20 18 16 22 22 H 1.48496 * 109.46852 * 210.00102 * 20 18 16 23 23 H 1.48504 * 109.47108 * 329.99940 * 20 18 16 24 24 C 1.48531 * 111.00134 * 302.47979 * 11 10 9 25 25 N 1.31749 * 119.07430 * 269.73074 * 5 4 3 26 26 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 31 31 H 1.09001 * 109.46918 * 299.99649 * 4 3 2 32 32 H 1.08999 * 109.46857 * 59.99535 * 4 3 2 33 33 H 1.08004 * 120.84004 * 180.02562 * 9 7 6 34 34 H 1.09002 * 109.91900 * 333.51229 * 12 11 10 35 35 H 1.09007 * 109.91524 * 94.60424 * 12 11 10 36 36 H 1.08997 * 110.30762 * 120.13888 * 13 12 11 37 37 H 1.08996 * 110.31226 * 242.21287 * 13 12 11 38 38 H 0.96695 * 114.00049 * 298.54565 * 15 14 13 39 39 H 0.96998 * 120.00132 * 179.97438 * 19 18 16 40 40 H 1.09006 * 110.66201 * 278.15162 * 24 11 10 41 41 H 1.08989 * 110.66966 * 41.28169 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9161 -0.0012 6 7 3.9850 3.5353 1.1503 7 6 4.3274 4.8162 1.1940 8 17 4.5409 5.6174 2.7192 9 6 4.5111 5.5056 0.0091 10 6 4.3276 4.8189 -1.1916 11 7 4.4993 5.4652 -2.4052 12 6 5.8753 5.9914 -2.5355 13 6 5.7828 7.3062 -3.3318 14 6 4.2753 7.5028 -3.6127 15 8 3.9351 7.0149 -4.9121 16 6 3.8914 8.9533 -3.4725 17 1 3.1670 9.2508 -2.7287 18 6 4.4651 9.9007 -4.2937 19 7 5.3476 9.5386 -5.1990 20 14 3.9888 11.6986 -4.1203 21 1 4.8924 12.3582 -3.1438 22 1 4.1087 12.3717 -5.4386 23 1 2.5866 11.7952 -3.6409 24 6 3.6030 6.6448 -2.5115 25 7 3.9894 3.5329 -1.1529 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8340 0.9764 0.8892 32 1 3.8333 0.9766 -0.8908 33 1 4.7904 6.5489 0.0131 34 1 6.2943 6.1842 -1.5478 35 1 6.4984 5.2737 -3.0692 36 1 6.1684 8.1355 -2.7390 37 1 6.3355 7.2215 -4.2674 38 1 4.3910 7.4684 -5.6342 39 1 5.7509 10.2051 -5.7769 40 1 2.6020 6.3410 -2.8181 41 1 3.5688 7.1884 -1.5675 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894348736.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:02 Heat of formation + Delta-G solvation = -52.776706 kcal Electronic energy + Delta-G solvation = -25593.070294 eV Core-core repulsion = 21726.974149 eV Total energy + Delta-G solvation = -3866.096145 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.64186 -40.31114 -39.00016 -38.09878 -36.99875 -34.59073 -34.17122 -33.73880 -32.04886 -30.69885 -30.00800 -28.48780 -26.88095 -24.87103 -24.19778 -23.68933 -22.06043 -21.53708 -19.49740 -19.23935 -18.35524 -17.87736 -17.25007 -16.89428 -16.82036 -16.69820 -16.32173 -15.96176 -15.87978 -15.56917 -14.91691 -14.38242 -14.30322 -14.03594 -13.74072 -13.71543 -13.42745 -13.26282 -13.12575 -12.93708 -12.80116 -12.57065 -12.47083 -12.32937 -12.25954 -12.25088 -12.06325 -11.90179 -11.47729 -11.15745 -10.88106 -10.70413 -10.66115 -10.59839 -10.13723 -9.67568 -8.21772 -6.37367 -0.62889 -0.46317 0.31081 1.42491 1.46391 1.54620 1.92797 2.15781 2.40416 2.57616 3.03626 3.09510 3.30286 3.38532 3.74707 3.83691 3.94729 3.97366 4.11210 4.19639 4.20698 4.27344 4.36882 4.41965 4.53028 4.53787 4.61333 4.76747 4.85480 4.94063 5.04870 5.06997 5.27613 5.34268 5.44969 5.50869 5.58000 5.78534 5.96399 6.12646 6.15033 6.67661 6.75238 7.34424 7.47021 8.84016 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.003263 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.606408 B = 8578.238592 C = 9608.269936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.410 6.410 4 C 0.140 3.860 5 C 0.341 3.659 6 N -0.514 5.514 7 C 0.229 3.771 8 Cl 0.008 6.992 9 C -0.235 4.235 10 C 0.367 3.633 11 N -0.489 5.489 12 C 0.052 3.948 13 C -0.117 4.117 14 C 0.246 3.754 15 O -0.590 6.590 16 C -0.561 4.561 17 H 0.058 0.942 18 C 0.036 3.964 19 N -0.907 5.907 20 Si 0.958 3.042 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.070 3.930 25 N -0.505 5.505 26 H 0.050 0.950 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.171 0.829 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.375 0.625 39 H 0.270 0.730 40 H 0.066 0.934 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 -14.109 13.053 19.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.329 6.329 4 C 0.062 3.938 5 C 0.072 3.928 6 N -0.232 5.232 7 C 0.056 3.944 8 Cl 0.037 6.963 9 C -0.262 4.262 10 C 0.128 3.872 11 N -0.211 5.211 12 C -0.073 4.073 13 C -0.156 4.156 14 C 0.206 3.794 15 O -0.398 6.398 16 C -0.600 4.600 17 H 0.076 0.924 18 C -0.166 4.166 19 N -0.546 5.546 20 Si 0.783 3.217 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.199 1.199 24 C -0.056 4.056 25 N -0.222 5.222 26 H 0.069 0.931 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.189 0.811 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.224 0.776 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.415 -15.578 12.982 20.328 hybrid contribution 0.734 2.887 0.170 2.983 sum -0.681 -12.691 13.152 18.290 Atomic orbital electron populations 1.21785 0.93189 1.03594 1.02307 1.22764 0.96090 0.81599 1.01897 1.87907 1.19549 1.29621 1.95823 1.21045 0.82894 0.85557 1.04347 1.23201 0.90807 0.97512 0.81328 1.67671 1.15174 1.09083 1.31317 1.22021 0.93515 0.89948 0.88886 1.98435 1.94405 1.75892 1.27606 1.23414 1.05735 1.04702 0.92327 1.20373 0.88171 0.89277 0.89339 1.61588 1.07042 1.25859 1.26660 1.23050 0.86728 0.97136 1.00424 1.22759 0.99625 0.93900 0.99305 1.19514 0.89569 0.89875 0.80491 1.86155 1.71848 1.64386 1.17404 1.21758 1.25685 0.92532 1.19977 0.92387 1.25616 0.93937 1.02794 0.94257 1.69796 1.28088 1.35758 1.20957 0.85565 0.78636 0.79938 0.77517 1.19798 1.20879 1.19921 1.23266 0.95821 0.87654 0.98831 1.67972 1.13448 1.09982 1.30814 0.93072 0.88380 0.92557 0.91731 0.91081 0.87837 0.88745 0.81126 0.91936 0.89837 0.91987 0.92267 0.77596 0.92068 0.91548 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.28 71.98 0.74 -1.54 16 2 C 0.05 0.85 6.66 71.98 0.48 1.33 16 3 O -0.41 -10.28 10.33 -148.98 -1.54 -11.82 16 4 C 0.14 3.16 6.37 71.24 0.45 3.61 16 5 C 0.34 10.26 7.27 138.77 1.01 11.27 16 6 N -0.51 -15.21 10.33 -179.01 -1.85 -17.06 16 7 C 0.23 6.52 7.33 84.59 0.62 7.14 16 8 Cl 0.01 0.19 29.15 -2.72 -0.08 0.11 16 9 C -0.24 -7.15 7.79 22.60 0.18 -6.97 16 10 C 0.37 12.96 5.88 133.12 0.78 13.75 16 11 N -0.49 -19.16 5.35 -688.83 -3.69 -22.85 16 12 C 0.05 1.90 6.52 86.44 0.56 2.46 16 13 C -0.12 -5.03 5.26 31.47 0.17 -4.86 16 14 C 0.25 11.74 0.95 -10.33 -0.01 11.73 16 15 O -0.59 -30.66 13.09 -148.98 -1.95 -32.61 16 16 C -0.56 -28.64 8.15 25.60 0.21 -28.44 16 17 H 0.06 2.94 7.78 -2.91 -0.02 2.91 16 18 C 0.04 1.78 5.28 84.66 0.45 2.23 16 19 N -0.91 -46.36 11.00 21.45 0.24 -46.13 16 20 Si 0.96 40.47 29.54 68.60 2.03 42.50 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 C 0.07 2.98 5.55 86.65 0.48 3.46 16 25 N -0.51 -17.70 10.37 -185.48 -1.92 -19.63 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.17 4.74 7.17 -2.91 -0.02 4.72 16 34 H 0.06 1.96 6.71 -2.39 -0.02 1.95 16 35 H 0.08 2.89 8.14 -2.38 -0.02 2.87 16 36 H 0.06 2.71 7.84 -2.39 -0.02 2.69 16 37 H 0.06 2.70 7.98 -2.39 -0.02 2.68 16 38 H 0.38 19.63 7.46 -74.06 -0.55 19.08 16 39 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 40 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 41 H 0.07 2.73 6.59 -2.39 -0.02 2.71 16 Total: -1.00 -59.67 356.88 -2.14 -61.81 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.51 Total: 30.51 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 6.12 Total: 15.16 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -7.22 Total: -105.66 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -3.49 Total: -44.43 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -0.08 Total: 0.11 kcal Total: -59.67 -2.14 -61.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894348736.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.035 kcal (2) G-P(sol) polarization free energy of solvation -59.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds