Wall clock time and date at job start Tue Mar 31 2020 15:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.46958 * 2 1 4 4 C 1.42906 * 113.99914 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47053 * 180.02562 * 4 3 2 6 6 N 1.31783 * 119.07517 * 269.97855 * 5 4 3 7 7 C 1.32658 * 120.98396 * 180.02562 * 6 5 4 8 8 Cl 1.73601 * 120.41622 * 180.02562 * 7 6 5 9 9 C 1.38314 * 119.16966 * 359.74512 * 7 6 5 10 10 C 1.39524 * 118.31789 * 0.49746 * 9 7 6 11 11 N 1.38563 * 120.52001 * 179.78024 * 10 9 7 12 12 C 1.48558 * 111.00121 * 59.59218 * 11 10 9 13 13 C 1.54381 * 104.59606 * 200.95629 * 12 11 10 14 14 C 1.54263 * 105.05693 * 23.85596 * 13 12 11 15 15 O 1.42901 * 110.32457 * 118.99837 * 14 13 12 16 16 C 1.50703 * 110.32261 * 241.10230 * 14 13 12 17 17 H 1.07999 * 119.99930 * 120.67806 * 16 14 13 18 18 C 1.37877 * 119.99834 * 300.40454 * 16 14 13 19 19 N 1.31517 * 119.99920 * 354.64777 * 18 16 14 20 20 Si 1.86799 * 120.00181 * 174.64851 * 18 16 14 21 21 H 1.48501 * 109.47328 * 94.97231 * 20 18 16 22 22 H 1.48498 * 109.47426 * 214.97461 * 20 18 16 23 23 H 1.48503 * 109.46987 * 334.97289 * 20 18 16 24 24 C 1.48556 * 110.99939 * 304.17069 * 11 10 9 25 25 N 1.31737 * 119.07691 * 89.99709 * 5 4 3 26 26 H 1.09004 * 109.47117 * 59.99738 * 1 2 3 27 27 H 1.09000 * 109.46744 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47439 * 299.99772 * 1 2 3 29 29 H 1.09004 * 109.47243 * 240.00481 * 2 1 3 30 30 H 1.08996 * 109.47223 * 120.00563 * 2 1 3 31 31 H 1.08994 * 109.46729 * 60.00617 * 4 3 2 32 32 H 1.08995 * 109.47251 * 300.00141 * 4 3 2 33 33 H 1.08004 * 120.84380 * 180.27038 * 9 7 6 34 34 H 1.09003 * 110.41060 * 82.18084 * 12 11 10 35 35 H 1.09003 * 110.41270 * 319.73622 * 12 11 10 36 36 H 1.08998 * 110.32776 * 264.95732 * 13 12 11 37 37 H 1.09000 * 110.32167 * 142.74346 * 13 12 11 38 38 H 0.96696 * 113.99961 * 56.34210 * 15 14 13 39 39 H 0.97005 * 119.99764 * 180.02562 * 19 18 16 40 40 H 1.09002 * 110.41036 * 40.26915 * 24 11 10 41 41 H 1.08994 * 110.41566 * 277.81627 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8195 2.9162 0.0012 6 7 3.9854 3.5352 -1.1503 7 6 4.3278 4.8161 -1.1940 8 17 4.5419 5.6171 -2.7192 9 6 4.5063 5.5070 -0.0092 10 6 4.3275 4.8191 1.1915 11 7 4.4992 5.4654 2.4051 12 6 3.5640 6.6124 2.5344 13 6 4.2052 7.5180 3.6078 14 6 5.7077 7.1692 3.5809 15 8 6.4787 8.3218 3.2355 16 6 6.1440 6.6305 4.9190 17 1 6.5672 5.6394 4.9901 18 6 6.0080 7.4050 6.0515 19 7 5.5967 8.6501 5.9511 20 14 6.4079 6.6858 7.7285 21 1 7.8067 7.0267 8.0925 22 1 5.4811 7.2493 8.7426 23 1 6.2540 5.2094 7.6834 24 6 5.8478 6.0821 2.4936 25 7 3.9840 3.5344 1.1528 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8340 0.9766 -0.8892 32 1 3.8333 0.9767 0.8907 33 1 4.7808 6.5515 -0.0132 34 1 2.5836 6.2682 2.8638 35 1 3.4823 7.1450 1.5869 36 1 3.7833 7.2996 4.5887 37 1 4.0558 8.5679 3.3556 38 1 6.3341 9.0805 3.8173 39 1 5.5014 9.1952 6.7479 40 1 6.1235 6.5319 1.5398 41 1 6.5869 5.3389 2.7924 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894348739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:05 Heat of formation + Delta-G solvation = -31.332551 kcal Electronic energy + Delta-G solvation = -25602.011682 eV Core-core repulsion = 21736.845425 eV Total energy + Delta-G solvation = -3865.166256 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.39120 -38.83934 -38.06817 -36.99887 -35.39448 -33.33980 -32.58838 -32.17763 -31.17403 -29.08216 -28.20263 -27.47421 -25.02008 -23.58429 -23.01955 -22.92936 -20.73132 -19.67908 -18.19791 -17.56793 -17.07590 -16.95214 -16.11928 -15.73040 -15.48201 -15.07007 -14.87050 -14.81925 -14.20614 -13.95396 -13.54586 -13.48394 -12.98438 -12.71279 -12.52188 -12.36603 -12.18032 -11.95263 -11.73480 -11.61448 -11.45009 -11.27954 -11.20995 -10.99186 -10.78204 -10.67743 -10.42781 -10.25391 -10.05302 -9.86999 -9.65113 -9.55651 -9.19155 -8.60958 -8.30421 -8.24313 -6.23690 -4.27838 0.56511 0.78685 1.43564 3.01741 3.23888 3.31801 3.37360 3.41309 3.69574 4.08956 4.32385 4.52169 4.56002 4.81049 4.90617 4.95119 5.05745 5.07942 5.13602 5.18417 5.37883 5.39503 5.45179 5.59450 5.68148 5.81147 5.81739 5.88977 5.92972 6.04032 6.29797 6.61263 6.68574 6.76577 6.89652 6.92519 7.27580 7.38426 7.45285 7.77999 7.99229 8.11593 8.74097 9.31733 9.44851 10.84727 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.003485 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.258805 B = 8033.509022 C = 9735.654137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.380 6.380 4 C 0.139 3.861 5 C 0.346 3.654 6 N -0.512 5.512 7 C 0.229 3.771 8 Cl -0.017 7.017 9 C -0.238 4.238 10 C 0.383 3.617 11 N -0.463 5.463 12 C 0.042 3.958 13 C -0.121 4.121 14 C 0.254 3.746 15 O -0.592 6.592 16 C -0.521 4.521 17 H 0.064 0.936 18 C 0.069 3.931 19 N -0.898 5.898 20 Si 0.900 3.100 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.271 1.271 24 C 0.059 3.941 25 N -0.480 5.480 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.160 0.840 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.385 0.615 39 H 0.267 0.733 40 H 0.043 0.957 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.292 -10.394 -13.192 17.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.298 6.298 4 C 0.060 3.940 5 C 0.077 3.923 6 N -0.230 5.230 7 C 0.057 3.943 8 Cl 0.011 6.989 9 C -0.264 4.264 10 C 0.144 3.856 11 N -0.186 5.186 12 C -0.084 4.084 13 C -0.160 4.160 14 C 0.214 3.786 15 O -0.401 6.401 16 C -0.559 4.559 17 H 0.082 0.918 18 C -0.133 4.133 19 N -0.538 5.538 20 Si 0.727 3.273 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.196 1.196 24 C -0.066 4.066 25 N -0.197 5.197 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.178 0.822 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.236 0.764 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.580 -11.764 -13.253 18.903 hybrid contribution 0.470 1.393 0.546 1.568 sum -6.110 -10.371 -12.707 17.503 Atomic orbital electron populations 1.21743 0.93552 1.02242 1.03341 1.22502 0.95735 0.83081 1.00398 1.87937 1.19227 1.27113 1.95555 1.20887 0.82838 0.87559 1.02688 1.22506 0.91717 0.96214 0.81885 1.67527 1.15216 1.08891 1.31411 1.21823 0.94452 0.89999 0.88012 1.98425 1.94664 1.76399 1.29387 1.23425 1.05819 1.04355 0.92828 1.20448 0.86793 0.89021 0.89380 1.62326 1.06343 1.25484 1.24482 1.23367 0.96049 0.89557 0.99468 1.22947 0.98845 0.96568 0.97663 1.19195 0.86545 0.82249 0.90625 1.86085 1.69538 1.25299 1.59219 1.21590 1.41516 1.01546 0.91257 0.91804 1.24976 0.94100 0.94713 0.99535 1.69669 1.47210 1.06910 1.30033 0.86443 0.78104 0.79640 0.83066 1.20693 1.21088 1.19584 1.23244 0.87043 0.97291 0.99067 1.67966 1.12653 1.09577 1.29482 0.91864 0.90962 0.91659 0.93093 0.92871 0.90250 0.89817 0.82215 0.90398 0.94104 0.89924 0.92100 0.76406 0.92355 0.93830 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.06 0.53 6.66 37.16 0.25 0.78 16 3 O -0.38 -4.92 10.33 -35.23 -0.36 -5.28 16 4 C 0.14 1.69 6.37 36.01 0.23 1.92 16 5 C 0.35 5.41 7.27 -157.25 -1.14 4.27 16 6 N -0.51 -7.95 10.33 -7.94 -0.08 -8.03 16 7 C 0.23 3.43 7.33 -17.17 -0.13 3.30 16 8 Cl -0.02 -0.21 29.15 -51.86 -1.51 -1.73 16 9 C -0.24 -3.73 7.93 -39.07 -0.31 -4.04 16 10 C 0.38 6.87 5.94 -154.76 -0.92 5.95 16 11 N -0.46 -9.14 5.46 -168.62 -0.92 -10.06 16 12 C 0.04 0.77 6.36 -2.18 -0.01 0.76 16 13 C -0.12 -2.63 5.55 -25.35 -0.14 -2.77 16 14 C 0.25 5.98 1.05 -90.38 -0.09 5.89 16 15 O -0.59 -14.46 12.94 -35.23 -0.46 -14.91 16 16 C -0.52 -13.60 8.12 -34.44 -0.28 -13.88 16 17 H 0.06 1.70 7.53 -52.49 -0.40 1.30 16 18 C 0.07 1.77 4.95 -17.82 -0.09 1.68 16 19 N -0.90 -23.16 10.93 55.43 0.61 -22.55 16 20 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 C 0.06 1.24 5.62 -2.18 -0.01 1.23 16 25 N -0.48 -8.56 10.37 -9.98 -0.10 -8.66 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.16 2.32 6.86 -52.48 -0.36 1.96 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.04 0.68 6.79 -51.93 -0.35 0.33 16 36 H 0.08 1.97 7.23 -51.93 -0.38 1.59 16 37 H 0.06 1.29 7.98 -51.93 -0.41 0.87 16 38 H 0.38 9.49 7.36 45.56 0.34 9.82 16 39 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 40 H 0.04 0.85 6.48 -51.93 -0.34 0.51 16 41 H 0.09 1.87 7.66 -51.93 -0.40 1.47 16 LS Contribution 355.14 15.07 5.35 5.35 Total: -1.00 -28.26 355.14 -9.58 -37.85 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -4.81 Total: 8.29 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -2.27 Total: 4.26 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.50 Total: -49.30 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.82 Total: -20.20 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.51 Total: -1.73 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.26 -9.58 -37.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894348739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.515 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds