Wall clock time and date at job start Tue Mar 31 2020 15:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.46958 * 2 1 4 4 C 1.42906 * 113.99914 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47053 * 180.02562 * 4 3 2 6 6 N 1.31783 * 119.07517 * 269.97855 * 5 4 3 7 7 C 1.32658 * 120.98396 * 180.02562 * 6 5 4 8 8 Cl 1.73601 * 120.41622 * 180.02562 * 7 6 5 9 9 C 1.38314 * 119.16966 * 359.74512 * 7 6 5 10 10 C 1.39524 * 118.31789 * 0.49746 * 9 7 6 11 11 N 1.38563 * 120.52001 * 179.78024 * 10 9 7 12 12 C 1.48558 * 111.00121 * 59.59218 * 11 10 9 13 13 C 1.54381 * 104.59606 * 200.95629 * 12 11 10 14 14 C 1.54263 * 105.05693 * 23.85596 * 13 12 11 15 15 O 1.42901 * 110.32457 * 118.99837 * 14 13 12 16 16 C 1.50703 * 110.32261 * 241.10230 * 14 13 12 17 17 H 1.07999 * 119.99930 * 120.67806 * 16 14 13 18 18 C 1.37877 * 119.99834 * 300.40454 * 16 14 13 19 19 N 1.31517 * 119.99920 * 354.64777 * 18 16 14 20 20 Si 1.86799 * 120.00181 * 174.64851 * 18 16 14 21 21 H 1.48501 * 109.47328 * 94.97231 * 20 18 16 22 22 H 1.48498 * 109.47426 * 214.97461 * 20 18 16 23 23 H 1.48503 * 109.46987 * 334.97289 * 20 18 16 24 24 C 1.48556 * 110.99939 * 304.17069 * 11 10 9 25 25 N 1.31737 * 119.07691 * 89.99709 * 5 4 3 26 26 H 1.09004 * 109.47117 * 59.99738 * 1 2 3 27 27 H 1.09000 * 109.46744 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47439 * 299.99772 * 1 2 3 29 29 H 1.09004 * 109.47243 * 240.00481 * 2 1 3 30 30 H 1.08996 * 109.47223 * 120.00563 * 2 1 3 31 31 H 1.08994 * 109.46729 * 60.00617 * 4 3 2 32 32 H 1.08995 * 109.47251 * 300.00141 * 4 3 2 33 33 H 1.08004 * 120.84380 * 180.27038 * 9 7 6 34 34 H 1.09003 * 110.41060 * 82.18084 * 12 11 10 35 35 H 1.09003 * 110.41270 * 319.73622 * 12 11 10 36 36 H 1.08998 * 110.32776 * 264.95732 * 13 12 11 37 37 H 1.09000 * 110.32167 * 142.74346 * 13 12 11 38 38 H 0.96696 * 113.99961 * 56.34210 * 15 14 13 39 39 H 0.97005 * 119.99764 * 180.02562 * 19 18 16 40 40 H 1.09002 * 110.41036 * 40.26915 * 24 11 10 41 41 H 1.08994 * 110.41566 * 277.81627 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8195 2.9162 0.0012 6 7 3.9854 3.5352 -1.1503 7 6 4.3278 4.8161 -1.1940 8 17 4.5419 5.6171 -2.7192 9 6 4.5063 5.5070 -0.0092 10 6 4.3275 4.8191 1.1915 11 7 4.4992 5.4654 2.4051 12 6 3.5640 6.6124 2.5344 13 6 4.2052 7.5180 3.6078 14 6 5.7077 7.1692 3.5809 15 8 6.4787 8.3218 3.2355 16 6 6.1440 6.6305 4.9190 17 1 6.5672 5.6394 4.9901 18 6 6.0080 7.4050 6.0515 19 7 5.5967 8.6501 5.9511 20 14 6.4079 6.6858 7.7285 21 1 7.8067 7.0267 8.0925 22 1 5.4811 7.2493 8.7426 23 1 6.2540 5.2094 7.6834 24 6 5.8478 6.0821 2.4936 25 7 3.9840 3.5344 1.1528 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8340 0.9766 -0.8892 32 1 3.8333 0.9767 0.8907 33 1 4.7808 6.5515 -0.0132 34 1 2.5836 6.2682 2.8638 35 1 3.4823 7.1450 1.5869 36 1 3.7833 7.2996 4.5887 37 1 4.0558 8.5679 3.3556 38 1 6.3341 9.0805 3.8173 39 1 5.5014 9.1952 6.7479 40 1 6.1235 6.5319 1.5398 41 1 6.5869 5.3389 2.7924 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894348739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:04 Heat of formation + Delta-G solvation = -51.159460 kcal Electronic energy + Delta-G solvation = -25602.871441 eV Core-core repulsion = 21736.845425 eV Total energy + Delta-G solvation = -3866.026016 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.65059 -40.33873 -39.00240 -38.10578 -37.07789 -34.60652 -34.17482 -33.77320 -32.05887 -30.61921 -29.92393 -28.49954 -26.85325 -24.87588 -24.24987 -23.68850 -22.20201 -21.46750 -19.44980 -19.04620 -18.77005 -17.88057 -17.11687 -16.88226 -16.78595 -16.73211 -16.28340 -15.98613 -15.75186 -15.68454 -15.01463 -14.43428 -14.24980 -13.99904 -13.82344 -13.81407 -13.39319 -13.14818 -13.10753 -13.01618 -12.79815 -12.53288 -12.45555 -12.33090 -12.25042 -12.23157 -12.06410 -11.98433 -11.48919 -11.14621 -10.88460 -10.68131 -10.66366 -10.57103 -10.17118 -9.75029 -8.20462 -6.30679 -0.63772 -0.47052 0.30563 1.41439 1.45089 1.54950 1.93099 2.10153 2.42340 2.56148 3.05264 3.08813 3.28832 3.37396 3.76853 3.79629 3.93504 4.03761 4.11834 4.19408 4.21196 4.26585 4.36723 4.39428 4.43292 4.53094 4.58242 4.76469 4.85638 4.91623 5.05009 5.05255 5.18983 5.27560 5.43170 5.57930 5.63834 5.78356 5.95662 6.11715 6.19238 6.71819 6.74691 7.35331 7.46252 8.86113 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.003485 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.258805 B = 8033.509022 C = 9735.654137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.408 6.408 4 C 0.139 3.861 5 C 0.342 3.658 6 N -0.513 5.513 7 C 0.229 3.771 8 Cl 0.009 6.991 9 C -0.235 4.235 10 C 0.366 3.634 11 N -0.477 5.477 12 C 0.050 3.950 13 C -0.111 4.111 14 C 0.241 3.759 15 O -0.596 6.596 16 C -0.545 4.545 17 H 0.049 0.951 18 C 0.033 3.967 19 N -0.908 5.908 20 Si 0.952 3.048 21 H -0.278 1.278 22 H -0.279 1.279 23 H -0.276 1.276 24 C 0.070 3.930 25 N -0.504 5.504 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.172 0.828 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.381 0.619 39 H 0.269 0.731 40 H 0.058 0.942 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 -11.345 -14.456 19.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.327 6.327 4 C 0.061 3.939 5 C 0.073 3.927 6 N -0.232 5.232 7 C 0.057 3.943 8 Cl 0.037 6.963 9 C -0.261 4.261 10 C 0.127 3.873 11 N -0.200 5.200 12 C -0.076 4.076 13 C -0.150 4.150 14 C 0.201 3.799 15 O -0.405 6.405 16 C -0.583 4.583 17 H 0.067 0.933 18 C -0.168 4.168 19 N -0.548 5.548 20 Si 0.779 3.221 21 H -0.204 1.204 22 H -0.205 1.205 23 H -0.201 1.201 24 C -0.056 4.056 25 N -0.221 5.221 26 H 0.075 0.925 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.189 0.811 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.231 0.769 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.061 -12.723 -14.528 20.562 hybrid contribution 0.605 1.659 0.858 1.963 sum -6.455 -11.064 -13.671 18.734 Atomic orbital electron populations 1.21780 0.93056 1.03581 1.02370 1.22766 0.96170 0.81635 1.01839 1.87897 1.19410 1.29552 1.95817 1.21036 0.82963 0.85594 1.04285 1.23175 0.90814 0.97452 0.81305 1.67671 1.15126 1.09099 1.31296 1.22016 0.93469 0.89939 0.88910 1.98435 1.94393 1.75868 1.27556 1.23387 1.05692 1.04713 0.92318 1.20349 0.88280 0.89395 0.89287 1.62160 1.05664 1.25768 1.26422 1.23288 0.95814 0.89002 0.99479 1.22695 0.97697 0.97297 0.97342 1.19346 0.87401 0.82508 0.90667 1.86072 1.70056 1.25403 1.58998 1.21801 1.42244 1.01206 0.93068 0.93316 1.25554 0.94060 0.95116 1.02072 1.69724 1.47151 1.07284 1.30681 0.85629 0.77958 0.78643 0.79889 1.20402 1.20472 1.20051 1.23004 0.87779 0.96125 0.98732 1.67951 1.13500 1.09784 1.30849 0.92463 0.88477 0.92966 0.91161 0.91847 0.87896 0.88899 0.81103 0.89607 0.91747 0.92674 0.91976 0.76886 0.92171 0.92431 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 10.28 71.98 0.74 -1.42 16 2 C 0.05 0.82 6.66 71.98 0.48 1.30 16 3 O -0.41 -9.97 10.33 -148.98 -1.54 -11.51 16 4 C 0.14 3.16 6.37 71.24 0.45 3.61 16 5 C 0.34 10.25 7.27 138.77 1.01 11.26 16 6 N -0.51 -15.05 10.33 -179.02 -1.85 -16.90 16 7 C 0.23 6.42 7.33 84.59 0.62 7.04 16 8 Cl 0.01 0.20 29.15 -2.72 -0.08 0.12 16 9 C -0.23 -7.00 7.93 22.60 0.18 -6.82 16 10 C 0.37 12.81 5.94 133.12 0.79 13.60 16 11 N -0.48 -18.66 5.46 -687.39 -3.75 -22.42 16 12 C 0.05 1.82 6.36 86.45 0.55 2.37 16 13 C -0.11 -4.84 5.55 31.49 0.17 -4.67 16 14 C 0.24 11.44 1.05 -10.64 -0.01 11.43 16 15 O -0.60 -29.28 12.94 -148.98 -1.93 -31.21 16 16 C -0.55 -28.98 8.12 25.60 0.21 -28.77 16 17 H 0.05 2.67 7.53 -2.91 -0.02 2.64 16 18 C 0.03 1.69 4.95 84.65 0.42 2.11 16 19 N -0.91 -47.09 10.93 21.45 0.23 -46.86 16 20 Si 0.95 42.28 29.54 68.60 2.03 44.31 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 24 C 0.07 2.92 5.62 86.45 0.49 3.41 16 25 N -0.50 -17.61 10.37 -185.49 -1.92 -19.53 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.17 4.62 6.86 -2.91 -0.02 4.60 16 34 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.06 2.04 6.79 -2.39 -0.02 2.02 16 36 H 0.05 2.67 7.23 -2.39 -0.02 2.65 16 37 H 0.06 2.63 7.98 -2.39 -0.02 2.61 16 38 H 0.38 18.99 7.36 -74.06 -0.55 18.45 16 39 H 0.27 13.33 8.31 -92.70 -0.77 12.56 16 40 H 0.06 2.20 6.48 -2.39 -0.02 2.18 16 41 H 0.07 3.21 7.66 -2.39 -0.02 3.19 16 Total: -1.00 -60.02 355.14 -2.19 -62.21 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.52 Total: 27.33 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 6.10 Total: 14.45 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -7.29 Total: -105.70 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -3.47 Total: -42.72 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -0.08 Total: 0.12 kcal Total: -60.02 -2.19 -62.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894348739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.055 kcal (2) G-P(sol) polarization free energy of solvation -60.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds