Wall clock time and date at job start Tue Mar 31 2020 15:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34224 * 116.99740 * 2 1 4 4 O 1.20821 * 120.00461 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99673 * 180.02562 * 3 2 1 6 6 H 1.09009 * 115.54979 * 325.67249 * 5 3 2 7 7 C 1.53006 * 117.50113 * 180.02562 * 5 3 2 8 8 H 1.08998 * 117.49769 * 144.99745 * 7 5 3 9 9 C 1.52993 * 117.49487 * 359.97438 * 7 5 3 10 10 N 1.46503 * 109.46969 * 175.08696 * 9 7 5 11 11 C 1.39674 * 120.00312 * 180.02562 * 10 9 7 12 12 C 1.39010 * 120.03656 * 359.97438 * 11 10 9 13 13 C 1.38153 * 120.06270 * 180.02562 * 12 11 10 14 14 C 1.38173 * 120.13815 * 359.74969 * 13 12 11 15 15 C 1.38909 * 120.08144 * 0.50320 * 14 13 12 16 16 O 1.35755 * 120.03260 * 179.76943 * 15 14 13 17 17 C 1.34833 * 117.00015 * 185.25341 * 16 15 14 18 18 H 1.07996 * 120.00134 * 354.64204 * 17 16 15 19 19 C 1.38650 * 119.99872 * 174.91798 * 17 16 15 20 20 N 1.31560 * 119.99875 * 179.72348 * 19 17 16 21 21 Si 1.86805 * 120.00148 * 359.72838 * 19 17 16 22 22 H 1.48496 * 109.47089 * 89.99345 * 21 19 17 23 23 H 1.48497 * 109.47026 * 209.99786 * 21 19 17 24 24 H 1.48502 * 109.46764 * 329.99620 * 21 19 17 25 25 C 1.38740 * 120.04540 * 180.02562 * 11 10 9 26 26 C 1.53008 * 60.03130 * 252.49597 * 7 5 3 27 27 F 1.39902 * 117.49522 * 107.50028 * 26 7 5 28 28 F 1.39891 * 117.50086 * 252.51694 * 26 7 5 29 29 H 1.08998 * 109.46843 * 59.99383 * 1 2 3 30 30 H 1.08992 * 109.47233 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46674 * 299.99890 * 1 2 3 32 32 H 1.09006 * 109.47502 * 55.09331 * 9 7 5 33 33 H 1.09000 * 109.47620 * 295.08656 * 9 7 5 34 34 H 0.97000 * 120.00000 * 359.97438 * 10 9 7 35 35 H 1.07998 * 119.97020 * 0.02562 * 12 11 10 36 36 H 1.07996 * 119.93200 * 180.02562 * 13 12 11 37 37 H 1.08001 * 119.95616 * 180.27401 * 14 13 12 38 38 H 0.96999 * 119.99939 * 180.02562 * 20 19 17 39 39 H 1.08005 * 120.06998 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0786 0.4882 0.5537 7 6 4.2009 2.6671 0.0001 8 1 5.1305 2.7962 0.5543 9 6 3.2589 3.8726 0.0006 10 7 4.0426 5.1047 0.1195 11 6 3.3976 6.3433 0.1425 12 6 2.0119 6.4080 0.0521 13 6 1.3733 7.6329 0.0742 14 6 2.1089 8.7967 0.1914 15 6 3.4942 8.7392 0.2769 16 8 4.2161 9.8835 0.3873 17 6 5.5589 9.7655 0.3562 18 1 6.0146 8.7866 0.3347 19 6 6.3548 10.9008 0.3576 20 7 7.6652 10.7856 0.3328 21 14 5.5667 12.5940 0.3950 22 1 5.3826 13.0234 1.8046 23 1 6.4445 13.5642 -0.3074 24 1 4.2463 12.5404 -0.2825 25 6 4.1390 7.5107 0.2545 26 6 4.2461 1.8071 -1.2647 27 9 3.4230 2.1835 -2.3315 28 9 5.4773 1.2464 -1.6208 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.5717 3.7965 0.8434 33 1 2.6918 3.8912 -0.9301 34 1 5.0095 5.0602 0.1830 35 1 1.4340 5.4999 -0.0355 36 1 0.2967 7.6807 0.0043 37 1 1.6064 9.7524 0.2129 38 1 8.2220 11.5798 0.3342 39 1 5.2157 7.4633 0.3244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894423567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:16 Heat of formation + Delta-G solvation = -134.858029 kcal Electronic energy + Delta-G solvation = -27122.119283 eV Core-core repulsion = 22668.374394 eV Total energy + Delta-G solvation = -4453.744889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.20521 -47.86706 -41.11527 -39.18457 -38.11711 -36.99029 -36.25055 -34.22968 -32.26291 -29.84835 -28.85938 -28.40418 -26.13382 -25.12525 -24.73320 -22.18427 -21.69856 -20.90551 -20.51088 -18.75619 -18.02928 -17.78356 -17.56614 -17.39667 -16.76006 -16.66016 -15.96987 -15.54091 -15.10627 -14.92658 -14.51025 -14.27206 -14.13614 -13.98177 -13.97924 -13.79088 -13.64334 -13.51080 -13.37937 -13.01403 -12.62511 -12.38766 -12.18083 -12.04024 -11.81290 -11.42437 -11.26515 -11.05243 -10.83593 -10.79794 -10.55625 -10.38080 -10.15443 -9.42160 -9.37137 -8.77213 -7.42549 -6.83080 -6.35051 -4.01681 1.27713 1.93816 2.33558 2.44996 2.51322 2.60864 3.17437 3.27996 3.30220 3.46031 3.81806 3.95731 4.03852 4.26144 4.30116 4.61230 4.67543 4.67918 4.77388 4.84073 4.97841 5.00354 5.11023 5.19880 5.61742 5.67051 5.71248 5.91586 6.01138 6.18305 6.34692 6.55113 6.59043 6.98832 7.17046 7.26131 7.34223 7.54889 7.84441 7.93188 8.07784 8.20360 9.01283 9.66286 10.72968 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019696 B = 0.002678 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.260142 B =10453.242384 C =11516.178552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.352 6.352 3 C 0.490 3.510 4 O -0.477 6.477 5 C -0.163 4.163 6 H 0.166 0.834 7 C -0.120 4.120 8 H 0.154 0.846 9 C 0.161 3.839 10 N -0.756 5.756 11 C 0.248 3.752 12 C -0.269 4.269 13 C -0.041 4.041 14 C -0.236 4.236 15 C 0.195 3.805 16 O -0.219 6.219 17 C -0.385 4.385 18 H 0.105 0.895 19 C 0.062 3.938 20 N -0.884 5.884 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.259 1.259 25 C -0.288 4.288 26 C 0.235 3.765 27 F -0.144 7.144 28 F -0.146 7.146 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.396 0.604 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.278 0.722 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.564 -23.483 -0.100 25.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.269 6.269 3 C 0.331 3.669 4 O -0.362 6.362 5 C -0.184 4.184 6 H 0.184 0.816 7 C -0.139 4.139 8 H 0.172 0.828 9 C 0.036 3.964 10 N -0.389 5.389 11 C 0.147 3.853 12 C -0.292 4.292 13 C -0.060 4.060 14 C -0.257 4.257 15 C 0.142 3.858 16 O -0.124 6.124 17 C -0.461 4.461 18 H 0.123 0.877 19 C -0.141 4.141 20 N -0.523 5.523 21 Si 0.730 3.270 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.183 1.183 25 C -0.312 4.312 26 C 0.198 3.802 27 F -0.124 7.124 28 F -0.126 7.126 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.230 0.770 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.088 0.912 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.803 -22.973 -0.154 25.387 hybrid contribution 0.298 0.376 -0.151 0.503 sum -10.505 -22.597 -0.305 24.921 Atomic orbital electron populations 1.23379 0.75162 1.04113 1.03139 1.86457 1.24181 1.32419 1.83807 1.22015 0.89363 0.82001 0.73474 1.90764 1.66367 1.35680 1.43417 1.23354 0.91157 1.02059 1.01789 0.81632 1.24093 1.02825 0.91470 0.95558 0.82838 1.20914 0.91476 0.80232 1.03731 1.44520 1.08034 1.02438 1.83917 1.17411 0.91384 0.84172 0.92295 1.20224 0.92216 0.97676 1.19036 1.20383 0.98112 0.91452 0.96072 1.20036 0.91179 0.98366 1.16108 1.18785 0.90676 0.85487 0.90840 1.83585 1.20324 1.28129 1.80346 1.20750 0.76851 0.96697 1.51811 0.87737 1.24459 0.94575 0.99216 0.95838 1.69649 1.02918 1.30977 1.48716 0.86187 0.79915 0.81991 0.78862 1.19965 1.20941 1.18301 1.20605 1.00500 0.90639 1.19457 1.19709 0.79060 1.00886 0.80537 1.93092 1.70521 1.91104 1.57696 1.93095 1.40979 1.85438 1.93069 0.91409 0.87710 0.91368 0.89565 0.90546 0.76991 0.87293 0.87023 0.86937 0.91198 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.35 -2.89 10.57 -39.24 -0.41 -3.30 16 3 C 0.49 4.64 7.36 36.01 0.26 4.90 16 4 O -0.48 -5.68 12.86 -18.75 -0.24 -5.92 16 5 C -0.16 -1.24 6.29 -91.73 -0.58 -1.81 16 6 H 0.17 0.71 8.14 -51.92 -0.42 0.29 16 7 C -0.12 -1.07 5.83 -90.62 -0.53 -1.60 16 8 H 0.15 1.02 8.04 -51.93 -0.42 0.60 16 9 C 0.16 2.00 3.44 -4.04 -0.01 1.99 16 10 N -0.76 -11.31 5.73 -58.65 -0.34 -11.65 16 11 C 0.25 4.70 6.65 -83.81 -0.56 4.14 16 12 C -0.27 -4.88 9.31 -39.33 -0.37 -5.24 16 13 C -0.04 -0.75 10.03 -39.64 -0.40 -1.15 16 14 C -0.24 -4.94 9.99 -39.36 -0.39 -5.33 16 15 C 0.19 4.67 6.64 -39.14 -0.26 4.41 16 16 O -0.22 -5.93 8.58 0.03 0.00 -5.93 16 17 C -0.39 -11.05 9.94 30.88 0.31 -10.74 16 18 H 0.11 3.05 5.43 -52.49 -0.29 2.77 16 19 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 20 N -0.88 -25.86 13.96 55.48 0.77 -25.09 16 21 Si 0.90 22.09 28.62 -169.99 -4.86 17.23 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 25 C -0.29 -6.40 9.01 -39.20 -0.35 -6.75 16 26 C 0.24 2.28 5.14 -26.69 -0.14 2.14 16 27 F -0.14 -1.75 16.01 2.25 0.04 -1.71 16 28 F -0.15 -1.44 17.60 2.25 0.04 -1.40 16 29 H 0.07 0.41 8.13 -51.93 -0.42 -0.02 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.09 1.13 6.74 -51.93 -0.35 0.78 16 33 H 0.08 1.08 6.28 -51.93 -0.33 0.75 16 34 H 0.40 5.36 8.41 -40.82 -0.34 5.02 16 35 H 0.11 1.80 6.73 -52.49 -0.35 1.45 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.11 2.21 8.06 -52.49 -0.42 1.78 16 38 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.13 3.01 5.64 -52.48 -0.30 2.72 16 LS Contribution 345.18 15.07 5.20 5.20 Total: -1.00 -32.77 345.18 -5.89 -38.65 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -4.04 Total: 6.02 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -2.04 Total: -12.11 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.44 Total: -36.74 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.66 Total: -15.15 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.08 Total: -3.11 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.86 Total: 17.23 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.77 -5.89 -38.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894423567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.205 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds