Wall clock time and date at job start Tue Mar 31 2020 15:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34224 * 116.99740 * 2 1 4 4 O 1.20821 * 120.00461 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99673 * 180.02562 * 3 2 1 6 6 H 1.09009 * 115.54979 * 325.67249 * 5 3 2 7 7 C 1.53006 * 117.50113 * 180.02562 * 5 3 2 8 8 H 1.08998 * 117.49769 * 144.99745 * 7 5 3 9 9 C 1.52993 * 117.49487 * 359.97438 * 7 5 3 10 10 N 1.46503 * 109.46969 * 175.08696 * 9 7 5 11 11 C 1.39674 * 120.00312 * 180.02562 * 10 9 7 12 12 C 1.39010 * 120.03656 * 359.97438 * 11 10 9 13 13 C 1.38153 * 120.06270 * 180.02562 * 12 11 10 14 14 C 1.38173 * 120.13815 * 359.74969 * 13 12 11 15 15 C 1.38909 * 120.08144 * 0.50320 * 14 13 12 16 16 O 1.35755 * 120.03260 * 179.76943 * 15 14 13 17 17 C 1.34833 * 117.00015 * 185.25341 * 16 15 14 18 18 H 1.07996 * 120.00134 * 354.64204 * 17 16 15 19 19 C 1.38650 * 119.99872 * 174.91798 * 17 16 15 20 20 N 1.31560 * 119.99875 * 179.72348 * 19 17 16 21 21 Si 1.86805 * 120.00148 * 359.72838 * 19 17 16 22 22 H 1.48496 * 109.47089 * 89.99345 * 21 19 17 23 23 H 1.48497 * 109.47026 * 209.99786 * 21 19 17 24 24 H 1.48502 * 109.46764 * 329.99620 * 21 19 17 25 25 C 1.38740 * 120.04540 * 180.02562 * 11 10 9 26 26 C 1.53008 * 60.03130 * 252.49597 * 7 5 3 27 27 F 1.39902 * 117.49522 * 107.50028 * 26 7 5 28 28 F 1.39891 * 117.50086 * 252.51694 * 26 7 5 29 29 H 1.08998 * 109.46843 * 59.99383 * 1 2 3 30 30 H 1.08992 * 109.47233 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46674 * 299.99890 * 1 2 3 32 32 H 1.09006 * 109.47502 * 55.09331 * 9 7 5 33 33 H 1.09000 * 109.47620 * 295.08656 * 9 7 5 34 34 H 0.97000 * 120.00000 * 359.97438 * 10 9 7 35 35 H 1.07998 * 119.97020 * 0.02562 * 12 11 10 36 36 H 1.07996 * 119.93200 * 180.02562 * 13 12 11 37 37 H 1.08001 * 119.95616 * 180.27401 * 14 13 12 38 38 H 0.96999 * 119.99939 * 180.02562 * 20 19 17 39 39 H 1.08005 * 120.06998 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0786 0.4882 0.5537 7 6 4.2009 2.6671 0.0001 8 1 5.1305 2.7962 0.5543 9 6 3.2589 3.8726 0.0006 10 7 4.0426 5.1047 0.1195 11 6 3.3976 6.3433 0.1425 12 6 2.0119 6.4080 0.0521 13 6 1.3733 7.6329 0.0742 14 6 2.1089 8.7967 0.1914 15 6 3.4942 8.7392 0.2769 16 8 4.2161 9.8835 0.3873 17 6 5.5589 9.7655 0.3562 18 1 6.0146 8.7866 0.3347 19 6 6.3548 10.9008 0.3576 20 7 7.6652 10.7856 0.3328 21 14 5.5667 12.5940 0.3950 22 1 5.3826 13.0234 1.8046 23 1 6.4445 13.5642 -0.3074 24 1 4.2463 12.5404 -0.2825 25 6 4.1390 7.5107 0.2545 26 6 4.2461 1.8071 -1.2647 27 9 3.4230 2.1835 -2.3315 28 9 5.4773 1.2464 -1.6208 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.5717 3.7965 0.8434 33 1 2.6918 3.8912 -0.9301 34 1 5.0095 5.0602 0.1830 35 1 1.4340 5.4999 -0.0355 36 1 0.2967 7.6807 0.0043 37 1 1.6064 9.7524 0.2129 38 1 8.2220 11.5798 0.3342 39 1 5.2157 7.4633 0.3244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894423567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:15 Heat of formation + Delta-G solvation = -155.306740 kcal Electronic energy + Delta-G solvation = -27123.006006 eV Core-core repulsion = 22668.374394 eV Total energy + Delta-G solvation = -4454.631612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.99457 -48.66570 -41.83337 -40.86904 -39.19183 -38.30097 -37.14004 -35.56811 -34.35166 -31.28342 -30.33318 -29.17271 -27.34819 -27.03855 -25.46524 -23.49767 -22.89536 -22.07427 -21.63207 -19.90100 -19.43590 -19.17432 -18.61358 -18.29640 -17.61698 -17.46802 -17.05248 -16.80735 -16.52512 -16.21115 -15.84735 -15.68657 -15.35186 -15.28664 -15.08654 -14.82399 -14.78408 -14.58460 -14.42569 -14.24891 -14.09090 -13.85796 -13.41644 -13.16719 -13.02036 -12.69071 -12.60571 -12.33275 -12.20579 -11.98928 -11.87356 -11.68010 -11.38627 -11.26878 -10.94902 -10.66855 -9.18404 -8.47362 -8.30484 -6.19602 0.54893 0.72175 0.86120 1.31886 1.32901 1.37873 1.53765 1.72008 1.91375 2.23522 2.30919 2.83158 2.99439 3.12933 3.14045 3.23712 3.26812 3.61228 3.86827 4.15202 4.23701 4.27112 4.32205 4.33810 4.40636 4.57380 4.59795 4.70481 4.72646 4.78028 4.99751 5.03172 5.20955 5.42559 5.46463 5.75019 5.82686 5.89795 6.14084 6.46020 6.52607 6.79922 6.87813 7.64436 8.64310 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019696 B = 0.002678 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.260142 B =10453.242384 C =11516.178552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.487 3.513 4 O -0.506 6.506 5 C -0.135 4.135 6 H 0.206 0.794 7 C -0.121 4.121 8 H 0.181 0.819 9 C 0.163 3.837 10 N -0.747 5.747 11 C 0.252 3.748 12 C -0.259 4.259 13 C -0.028 4.028 14 C -0.247 4.247 15 C 0.159 3.841 16 O -0.244 6.244 17 C -0.395 4.395 18 H 0.081 0.919 19 C 0.009 3.991 20 N -0.925 5.925 21 Si 0.969 3.031 22 H -0.265 1.265 23 H -0.268 1.268 24 H -0.264 1.264 25 C -0.306 4.306 26 C 0.219 3.781 27 F -0.163 7.163 28 F -0.147 7.147 29 H 0.061 0.939 30 H 0.135 0.865 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.402 0.598 35 H 0.133 0.867 36 H 0.155 0.845 37 H 0.123 0.877 38 H 0.284 0.716 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.527 -25.380 0.342 28.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.330 3.670 4 O -0.394 6.394 5 C -0.155 4.155 6 H 0.223 0.777 7 C -0.140 4.140 8 H 0.198 0.802 9 C 0.040 3.960 10 N -0.379 5.379 11 C 0.148 3.852 12 C -0.281 4.281 13 C -0.046 4.046 14 C -0.268 4.268 15 C 0.110 3.890 16 O -0.152 6.152 17 C -0.472 4.472 18 H 0.099 0.901 19 C -0.189 4.189 20 N -0.566 5.566 21 Si 0.792 3.208 22 H -0.190 1.190 23 H -0.193 1.193 24 H -0.188 1.188 25 C -0.330 4.330 26 C 0.182 3.818 27 F -0.144 7.144 28 F -0.127 7.127 29 H 0.080 0.920 30 H 0.153 0.847 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.237 0.763 35 H 0.151 0.849 36 H 0.173 0.827 37 H 0.141 0.859 38 H 0.093 0.907 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.776 -24.952 0.286 28.034 hybrid contribution 0.706 0.621 -0.325 0.995 sum -12.069 -24.331 -0.040 27.160 Atomic orbital electron populations 1.23646 0.73842 1.06075 1.02908 1.86460 1.25516 1.31626 1.83249 1.22359 0.90055 0.81965 0.72671 1.90746 1.67151 1.36645 1.44855 1.23492 0.90279 1.01912 0.99848 0.77662 1.24075 1.03394 0.90798 0.95688 0.80219 1.20911 0.91932 0.80284 1.02922 1.44655 1.08686 1.02169 1.82373 1.17501 0.91936 0.84630 0.91139 1.20605 0.91840 0.98808 1.16893 1.20853 1.00114 0.90186 0.93478 1.20307 0.89927 1.00111 1.16445 1.19359 0.91961 0.85318 0.92406 1.83529 1.19219 1.29677 1.82745 1.20708 0.78093 0.96151 1.52217 0.90125 1.25263 0.95062 1.02892 0.95656 1.69728 1.04077 1.32249 1.50542 0.85233 0.78763 0.77569 0.79266 1.19028 1.19287 1.18800 1.20568 0.99745 0.91737 1.20979 1.19926 0.79250 1.02168 0.80423 1.93049 1.71106 1.91446 1.58766 1.93092 1.41074 1.85451 1.93113 0.91979 0.84734 0.91288 0.89544 0.91976 0.76289 0.84911 0.82742 0.85904 0.90668 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.35 -4.90 10.57 -51.36 -0.54 -5.44 16 3 C 0.49 8.10 7.36 71.24 0.52 8.62 16 4 O -0.51 -11.16 12.86 21.98 0.28 -10.88 16 5 C -0.14 -1.64 6.29 -11.51 -0.07 -1.72 16 6 H 0.21 0.82 8.14 -2.38 -0.02 0.80 16 7 C -0.12 -1.86 5.83 -10.79 -0.06 -1.92 16 8 H 0.18 1.82 8.04 -2.39 -0.02 1.80 16 9 C 0.16 3.76 3.44 86.38 0.30 4.06 16 10 N -0.75 -21.63 5.73 -339.48 -1.95 -23.58 16 11 C 0.25 9.36 6.65 38.20 0.25 9.61 16 12 C -0.26 -8.77 9.31 22.43 0.21 -8.56 16 13 C -0.03 -0.93 10.03 22.23 0.22 -0.71 16 14 C -0.25 -10.12 9.99 22.42 0.22 -9.89 16 15 C 0.16 7.84 6.64 22.56 0.15 7.99 16 16 O -0.24 -13.74 8.58 -22.82 -0.20 -13.93 16 17 C -0.40 -23.81 9.94 67.92 0.68 -23.13 16 18 H 0.08 5.07 5.43 -2.91 -0.02 5.05 16 19 C 0.01 0.55 5.49 84.83 0.47 1.01 16 20 N -0.92 -55.97 13.96 21.61 0.30 -55.67 16 21 Si 0.97 46.44 28.62 68.60 1.96 48.40 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 25 C -0.31 -14.04 9.01 22.52 0.20 -13.84 16 26 C 0.22 3.84 5.14 30.62 0.16 3.99 16 27 F -0.16 -3.83 16.01 44.97 0.72 -3.11 16 28 F -0.15 -2.63 17.60 44.97 0.79 -1.84 16 29 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 30 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.07 0.64 8.13 -2.39 -0.02 0.62 16 32 H 0.09 2.06 6.74 -2.38 -0.02 2.04 16 33 H 0.06 1.66 6.28 -2.39 -0.01 1.65 16 34 H 0.40 10.69 8.41 -92.71 -0.78 9.91 16 35 H 0.13 3.93 6.73 -2.91 -0.02 3.92 16 36 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 37 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 38 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 39 H 0.11 5.39 5.64 -2.91 -0.02 5.38 16 Total: -1.00 -74.28 345.18 6.16 -68.12 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.34 Total: 20.95 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 4.44 Total: -23.03 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -1.64 Total: -79.25 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.46 Total: -30.25 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 1.51 Total: -4.95 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.96 Total: 48.40 kcal Total: -74.28 6.16 -68.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894423567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.184 kcal (2) G-P(sol) polarization free energy of solvation -74.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds