Wall clock time and date at job start Tue Mar 31 2020 15:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99946 * 2 1 4 4 C 1.46902 * 110.99982 * 123.95598 * 2 1 3 5 5 C 1.50698 * 109.46923 * 75.87690 * 4 2 1 6 6 N 1.29326 * 120.00420 * 5.99834 * 5 4 2 7 7 N 1.37002 * 119.99741 * 186.00496 * 5 4 2 8 8 O 1.41606 * 120.00173 * 179.97438 * 7 5 4 9 9 C 1.42894 * 114.00216 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.47355 * 180.02562 * 9 8 7 11 11 C 1.38111 * 120.02577 * 359.72611 * 10 9 8 12 12 C 1.38385 * 120.05784 * 179.79155 * 11 10 9 13 13 Cl 1.73596 * 119.94880 * 180.22908 * 12 11 10 14 14 C 1.38438 * 120.10996 * 0.46265 * 12 11 10 15 15 C 1.38077 * 120.05082 * 359.79049 * 14 12 11 16 16 C 1.38849 * 120.02888 * 179.97438 * 10 9 8 17 17 O 1.35768 * 120.05800 * 0.02562 * 16 10 9 18 18 C 1.34827 * 116.99773 * 186.11123 * 17 16 10 19 19 H 1.07996 * 120.00617 * 2.87736 * 18 17 16 20 20 C 1.38651 * 119.99534 * 182.87089 * 18 17 16 21 21 N 1.31562 * 120.00292 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99855 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46987 * 90.00140 * 22 20 18 24 24 H 1.48502 * 109.46984 * 210.00320 * 22 20 18 25 25 H 1.48505 * 109.47062 * 330.00300 * 22 20 18 26 26 H 1.09005 * 109.46922 * 296.04505 * 1 2 3 27 27 H 1.08996 * 109.47249 * 56.04431 * 1 2 3 28 28 H 1.09004 * 109.47157 * 176.04606 * 1 2 3 29 29 H 1.09002 * 109.47319 * 179.23729 * 3 2 1 30 30 H 1.09000 * 109.47057 * 299.23385 * 3 2 1 31 31 H 1.09000 * 109.47129 * 59.23632 * 3 2 1 32 32 H 1.08996 * 109.46960 * 315.87724 * 4 2 1 33 33 H 1.08998 * 109.46974 * 195.87158 * 4 2 1 34 34 H 0.97000 * 119.99604 * 5.39655 * 6 5 4 35 35 H 0.96998 * 120.00457 * 359.97438 * 7 5 4 36 36 H 1.09004 * 109.47499 * 300.00378 * 9 8 7 37 37 H 1.09000 * 109.46877 * 60.00080 * 9 8 7 38 38 H 1.08007 * 119.97273 * 0.02562 * 11 10 9 39 39 H 1.08000 * 119.97231 * 179.76675 * 14 12 11 40 40 H 1.08002 * 120.01857 * 179.97438 * 15 14 12 41 41 H 0.96998 * 119.99885 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.8518 -2.2402 0.8600 6 7 1.4352 -2.6430 -0.2962 7 7 2.1624 -3.1538 1.8325 8 8 2.0270 -4.5391 1.5719 9 6 2.3857 -5.3756 2.6735 10 6 2.2048 -6.8208 2.2867 11 6 1.7473 -7.1465 1.0249 12 6 1.5850 -8.4735 0.6675 13 17 1.0154 -8.8797 -0.9212 14 6 1.8716 -9.4775 1.5765 15 6 2.3244 -9.1570 2.8409 16 6 2.4931 -7.8260 3.2002 17 8 2.9377 -7.5083 4.4430 18 6 3.3190 -8.5296 5.2363 19 1 3.3068 -9.5411 4.8579 20 6 3.7269 -8.2814 6.5380 21 7 3.7415 -7.0493 6.9992 22 14 4.2559 -9.6963 7.6369 23 1 5.7159 -9.9213 7.4859 24 1 3.9497 -9.3654 9.0518 25 1 3.5224 -10.9272 7.2466 26 1 -0.3633 0.4512 0.9234 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3634 -1.0253 -0.0709 29 1 3.0850 1.3424 0.0137 30 1 1.6571 1.8904 -0.8968 31 1 1.6349 1.8990 0.8831 32 1 1.4370 -0.5097 2.0378 33 1 3.0485 -0.5245 1.2821 34 1 1.2901 -2.0020 -1.0096 35 1 2.4752 -2.8518 2.6996 36 1 3.4279 -5.1988 2.9397 37 1 1.7486 -5.1451 3.5273 38 1 1.5195 -6.3648 0.3151 39 1 1.7406 -10.5124 1.2965 40 1 2.5474 -9.9407 3.5498 41 1 4.0266 -6.8758 7.9099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902612688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:43 Heat of formation + Delta-G solvation = 40.150225 kcal Electronic energy + Delta-G solvation = -24695.327384 eV Core-core repulsion = 20833.260853 eV Total energy + Delta-G solvation = -3862.066531 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.42973 -38.75009 -37.33410 -36.74992 -35.53350 -34.67843 -32.46479 -31.54475 -29.94583 -28.93173 -28.01745 -27.79650 -25.58585 -25.37539 -22.75393 -21.71766 -21.03213 -20.12955 -18.17945 -17.75597 -17.15497 -16.12281 -15.89131 -15.69153 -15.47617 -15.15961 -14.98443 -14.67688 -14.54225 -13.87719 -13.73352 -13.54215 -13.25658 -13.19376 -12.90050 -12.64154 -12.35459 -12.22518 -12.03618 -12.02009 -11.86901 -11.64476 -11.19236 -11.09409 -11.01391 -10.55591 -10.43526 -10.36805 -10.02842 -9.56591 -9.05914 -8.94098 -8.77813 -8.25365 -7.82259 -7.29338 -6.62151 -4.20093 1.93177 2.06748 2.16625 2.83599 2.86540 3.04376 3.05629 3.10067 3.55813 3.83601 4.28992 4.53858 4.71498 4.76927 4.93548 4.93949 4.98445 5.03999 5.07810 5.24595 5.25768 5.33225 5.47926 5.61942 5.64714 5.74644 5.85512 5.92583 6.07371 6.28722 6.40542 6.43796 6.51845 6.62141 6.84469 6.91854 7.06976 7.17033 7.45821 7.50915 7.81439 7.84488 8.83600 8.88143 9.46493 10.55028 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009714 B = 0.003182 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.871449 B = 8798.728433 C =11535.132345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.545 5.545 3 C 0.028 3.972 4 C 0.054 3.946 5 C 0.420 3.580 6 N -0.743 5.743 7 N -0.593 5.593 8 O -0.131 6.131 9 C 0.098 3.902 10 C -0.152 4.152 11 C -0.040 4.040 12 C -0.122 4.122 13 Cl -0.102 7.102 14 C -0.059 4.059 15 C -0.222 4.222 16 C 0.164 3.836 17 O -0.168 6.168 18 C -0.393 4.393 19 H 0.095 0.905 20 C 0.043 3.957 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.266 1.266 26 H 0.030 0.970 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.352 0.648 35 H 0.412 0.588 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.139 0.861 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 11.382 -8.068 14.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.270 5.270 3 C -0.120 4.120 4 C -0.079 4.079 5 C 0.135 3.865 6 N -0.378 5.378 7 N -0.281 5.281 8 O -0.135 6.135 9 C 0.021 3.979 10 C -0.155 4.155 11 C -0.059 4.059 12 C -0.149 4.149 13 Cl -0.074 7.074 14 C -0.077 4.077 15 C -0.241 4.241 16 C 0.109 3.891 17 O -0.071 6.071 18 C -0.469 4.469 19 H 0.112 0.888 20 C -0.162 4.162 21 N -0.492 5.492 22 Si 0.766 3.234 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.191 1.191 26 H 0.049 0.951 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.172 0.828 35 H 0.253 0.747 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.154 0.846 39 H 0.137 0.863 40 H 0.156 0.844 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.098 10.351 -8.927 14.015 hybrid contribution 0.179 0.539 1.752 1.841 sum -2.919 10.890 -7.175 13.364 Atomic orbital electron populations 1.22596 0.86427 1.03457 1.00943 1.61613 1.08759 1.14481 1.42148 1.22387 1.00800 0.87587 1.01189 1.21662 1.02179 0.91060 0.93024 1.20630 0.91382 0.85160 0.89327 1.68836 1.24168 1.42857 1.01944 1.45129 1.74312 0.93935 1.14743 1.90539 1.89543 1.00017 1.33371 1.21260 1.00504 0.87081 0.89047 1.18274 1.11707 0.91496 0.93982 1.20453 0.95951 0.94431 0.95091 1.20312 1.13295 0.94282 0.87038 1.98283 1.88581 1.94187 1.26357 1.20685 0.96848 0.97886 0.92326 1.21028 1.09473 0.96324 0.97316 1.18978 0.92007 0.91851 0.86307 1.83955 1.68975 1.35513 1.18631 1.21365 1.44589 0.87560 0.93411 0.88782 1.25294 0.96545 0.98091 0.96309 1.70015 1.43196 1.18967 1.17068 0.85688 0.79205 0.79621 0.78842 1.19739 1.20169 1.19053 0.95106 0.90829 0.90431 0.90961 0.90787 0.95164 0.91936 0.88256 0.82823 0.74744 0.91223 0.91274 0.84588 0.86253 0.84376 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 8.94 60.07 0.54 0.65 16 2 N -0.55 -4.74 3.87 -252.72 -0.98 -5.71 16 3 C 0.03 0.18 9.56 60.06 0.57 0.75 16 4 C 0.05 0.49 5.52 -4.98 -0.03 0.46 16 5 C 0.42 5.60 7.65 -154.56 -1.18 4.41 16 6 N -0.74 -11.67 12.74 32.89 0.42 -11.25 16 7 N -0.59 -8.45 6.49 32.83 0.21 -8.23 16 8 O -0.13 -2.37 9.59 -11.47 -0.11 -2.48 16 9 C 0.10 1.84 6.09 36.01 0.22 2.06 16 10 C -0.15 -3.14 5.90 -104.44 -0.62 -3.76 16 11 C -0.04 -0.79 9.15 -39.57 -0.36 -1.16 16 12 C -0.12 -2.29 6.32 -39.45 -0.25 -2.54 16 13 Cl -0.10 -1.71 28.95 -51.86 -1.50 -3.21 16 14 C -0.06 -1.08 9.82 -39.57 -0.39 -1.47 16 15 C -0.22 -4.59 9.14 -39.40 -0.36 -4.95 16 16 C 0.16 3.72 6.62 -39.11 -0.26 3.46 16 17 O -0.17 -4.38 9.19 0.00 0.00 -4.38 16 18 C -0.39 -10.21 9.46 30.88 0.29 -9.91 16 19 H 0.09 2.26 5.26 -52.49 -0.28 1.98 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 21 N -0.86 -23.36 13.67 55.48 0.76 -22.60 16 22 Si 0.94 19.34 29.55 -169.99 -5.02 14.32 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 26 H 0.03 0.23 8.09 -51.93 -0.42 -0.19 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.79 6.71 -51.93 -0.35 0.44 16 29 H 0.07 0.41 7.96 -51.93 -0.41 0.00 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.03 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.49 7.96 -51.93 -0.41 0.07 16 33 H 0.10 0.74 7.81 -51.93 -0.41 0.34 16 34 H 0.35 5.00 6.77 -40.82 -0.28 4.72 16 35 H 0.41 4.65 8.57 -40.82 -0.35 4.30 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.14 2.67 7.00 -52.48 -0.37 2.30 16 39 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.14 2.79 5.70 -52.49 -0.30 2.49 16 41 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -30.32 363.92 -7.89 -38.21 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -5.24 Total: 10.85 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -1.92 Total: -11.01 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.41 Total: -47.80 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.11 Total: -6.86 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -1.50 Total: -3.21 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.32 -7.89 -38.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902612688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.365 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds