Wall clock time and date at job start Tue Mar 31 2020 15:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99946 * 2 1 4 4 C 1.46902 * 110.99982 * 123.95598 * 2 1 3 5 5 C 1.50698 * 109.46923 * 75.87690 * 4 2 1 6 6 N 1.29326 * 120.00420 * 5.99834 * 5 4 2 7 7 N 1.37002 * 119.99741 * 186.00496 * 5 4 2 8 8 O 1.41606 * 120.00173 * 179.97438 * 7 5 4 9 9 C 1.42894 * 114.00216 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.47355 * 180.02562 * 9 8 7 11 11 C 1.38111 * 120.02577 * 359.72611 * 10 9 8 12 12 C 1.38385 * 120.05784 * 179.79155 * 11 10 9 13 13 Cl 1.73596 * 119.94880 * 180.22908 * 12 11 10 14 14 C 1.38438 * 120.10996 * 0.46265 * 12 11 10 15 15 C 1.38077 * 120.05082 * 359.79049 * 14 12 11 16 16 C 1.38849 * 120.02888 * 179.97438 * 10 9 8 17 17 O 1.35768 * 120.05800 * 0.02562 * 16 10 9 18 18 C 1.34827 * 116.99773 * 186.11123 * 17 16 10 19 19 H 1.07996 * 120.00617 * 2.87736 * 18 17 16 20 20 C 1.38651 * 119.99534 * 182.87089 * 18 17 16 21 21 N 1.31562 * 120.00292 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99855 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46987 * 90.00140 * 22 20 18 24 24 H 1.48502 * 109.46984 * 210.00320 * 22 20 18 25 25 H 1.48505 * 109.47062 * 330.00300 * 22 20 18 26 26 H 1.09005 * 109.46922 * 296.04505 * 1 2 3 27 27 H 1.08996 * 109.47249 * 56.04431 * 1 2 3 28 28 H 1.09004 * 109.47157 * 176.04606 * 1 2 3 29 29 H 1.09002 * 109.47319 * 179.23729 * 3 2 1 30 30 H 1.09000 * 109.47057 * 299.23385 * 3 2 1 31 31 H 1.09000 * 109.47129 * 59.23632 * 3 2 1 32 32 H 1.08996 * 109.46960 * 315.87724 * 4 2 1 33 33 H 1.08998 * 109.46974 * 195.87158 * 4 2 1 34 34 H 0.97000 * 119.99604 * 5.39655 * 6 5 4 35 35 H 0.96998 * 120.00457 * 359.97438 * 7 5 4 36 36 H 1.09004 * 109.47499 * 300.00378 * 9 8 7 37 37 H 1.09000 * 109.46877 * 60.00080 * 9 8 7 38 38 H 1.08007 * 119.97273 * 0.02562 * 11 10 9 39 39 H 1.08000 * 119.97231 * 179.76675 * 14 12 11 40 40 H 1.08002 * 120.01857 * 179.97438 * 15 14 12 41 41 H 0.96998 * 119.99885 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.8518 -2.2402 0.8600 6 7 1.4352 -2.6430 -0.2962 7 7 2.1624 -3.1538 1.8325 8 8 2.0270 -4.5391 1.5719 9 6 2.3857 -5.3756 2.6735 10 6 2.2048 -6.8208 2.2867 11 6 1.7473 -7.1465 1.0249 12 6 1.5850 -8.4735 0.6675 13 17 1.0154 -8.8797 -0.9212 14 6 1.8716 -9.4775 1.5765 15 6 2.3244 -9.1570 2.8409 16 6 2.4931 -7.8260 3.2002 17 8 2.9377 -7.5083 4.4430 18 6 3.3190 -8.5296 5.2363 19 1 3.3068 -9.5411 4.8579 20 6 3.7269 -8.2814 6.5380 21 7 3.7415 -7.0493 6.9992 22 14 4.2559 -9.6963 7.6369 23 1 5.7159 -9.9213 7.4859 24 1 3.9497 -9.3654 9.0518 25 1 3.5224 -10.9272 7.2466 26 1 -0.3633 0.4512 0.9234 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3634 -1.0253 -0.0709 29 1 3.0850 1.3424 0.0137 30 1 1.6571 1.8904 -0.8968 31 1 1.6349 1.8990 0.8831 32 1 1.4370 -0.5097 2.0378 33 1 3.0485 -0.5245 1.2821 34 1 1.2901 -2.0020 -1.0096 35 1 2.4752 -2.8518 2.6996 36 1 3.4279 -5.1988 2.9397 37 1 1.7486 -5.1451 3.5273 38 1 1.5195 -6.3648 0.3151 39 1 1.7406 -10.5124 1.2965 40 1 2.5474 -9.9407 3.5498 41 1 4.0266 -6.8758 7.9099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902612688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:43 Heat of formation + Delta-G solvation = 21.235410 kcal Electronic energy + Delta-G solvation = -24696.147592 eV Core-core repulsion = 20833.260853 eV Total energy + Delta-G solvation = -3862.886739 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.10307 -39.67116 -38.72458 -38.21005 -37.01289 -35.77814 -34.31849 -32.99150 -31.22533 -30.58206 -28.81738 -28.39301 -27.41049 -26.91228 -23.60617 -23.25748 -22.57597 -21.23974 -19.96100 -19.00205 -18.82515 -17.29732 -16.92411 -16.79708 -16.61847 -16.37835 -16.21126 -16.15729 -15.95428 -15.51033 -15.33137 -14.70224 -14.58448 -14.36611 -14.14092 -13.88844 -13.63631 -13.51735 -13.23416 -12.86640 -12.80049 -12.64859 -12.64147 -12.61859 -12.58406 -12.12386 -11.90180 -11.87532 -11.35663 -11.29161 -10.76704 -10.05466 -9.84001 -9.48952 -9.06352 -8.96363 -8.49402 -6.15755 0.32500 0.42176 0.96101 1.32894 1.39447 1.46276 1.54793 1.79049 2.16390 2.63622 2.88984 3.07369 3.32415 3.46281 3.68276 3.82412 4.03192 4.16015 4.24273 4.27821 4.33866 4.37859 4.39317 4.47957 4.48627 4.68252 4.71333 4.76156 4.95016 4.99119 5.03830 5.05131 5.13685 5.36621 5.39617 5.49721 5.75650 5.86329 5.93561 5.96403 6.41819 6.61251 6.95441 7.65971 7.82654 8.71894 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009714 B = 0.003182 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.871449 B = 8798.728433 C =11535.132345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.560 5.560 3 C 0.029 3.971 4 C 0.063 3.937 5 C 0.419 3.581 6 N -0.783 5.783 7 N -0.589 5.589 8 O -0.152 6.152 9 C 0.112 3.888 10 C -0.157 4.157 11 C -0.043 4.043 12 C -0.113 4.113 13 Cl -0.076 7.076 14 C -0.052 4.052 15 C -0.224 4.224 16 C 0.138 3.862 17 O -0.207 6.207 18 C -0.415 4.415 19 H 0.106 0.894 20 C -0.012 4.012 21 N -0.909 5.909 22 Si 1.013 2.987 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.253 1.253 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.357 0.643 35 H 0.425 0.575 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.137 0.863 39 H 0.153 0.847 40 H 0.142 0.858 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 11.117 -8.959 14.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.285 5.285 3 C -0.118 4.118 4 C -0.070 4.070 5 C 0.135 3.865 6 N -0.420 5.420 7 N -0.281 5.281 8 O -0.156 6.156 9 C 0.035 3.965 10 C -0.160 4.160 11 C -0.062 4.062 12 C -0.140 4.140 13 Cl -0.047 7.047 14 C -0.071 4.071 15 C -0.243 4.243 16 C 0.085 3.915 17 O -0.112 6.112 18 C -0.491 4.491 19 H 0.123 0.877 20 C -0.211 4.211 21 N -0.546 5.546 22 Si 0.833 3.167 23 H -0.190 1.190 24 H -0.198 1.198 25 H -0.176 1.176 26 H 0.057 0.943 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.138 0.862 34 H 0.177 0.823 35 H 0.268 0.732 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.155 0.845 39 H 0.171 0.829 40 H 0.159 0.841 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.221 10.092 -9.864 14.475 hybrid contribution 0.096 0.686 1.696 1.832 sum -3.125 10.779 -8.169 13.881 Atomic orbital electron populations 1.22541 0.86431 1.02170 1.01941 1.61585 1.08933 1.15893 1.42114 1.22443 1.01159 0.86168 1.02057 1.21669 1.03773 0.87738 0.93844 1.21294 0.89798 0.86789 0.88630 1.68790 1.25916 1.44061 1.03188 1.45379 1.74633 0.92131 1.15908 1.90493 1.89526 1.02334 1.33226 1.20980 0.99883 0.86649 0.88961 1.18551 1.10989 0.92341 0.94096 1.20508 0.96021 0.95067 0.94635 1.20520 1.11303 0.94003 0.88190 1.98298 1.88134 1.93959 1.24356 1.20965 0.95479 0.99494 0.91137 1.21193 1.09180 0.95601 0.98349 1.19389 0.92841 0.93323 0.85918 1.83940 1.71171 1.36133 1.19976 1.21842 1.45056 0.88190 0.93977 0.87665 1.26448 0.96374 1.00815 0.97507 1.70141 1.45504 1.21293 1.17664 0.84649 0.78986 0.76503 0.76568 1.19020 1.19820 1.17643 0.94289 0.89611 0.92849 0.90329 0.90030 0.94166 0.90225 0.86239 0.82311 0.73200 0.91840 0.91968 0.84523 0.82927 0.84056 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.94 127.69 1.14 1.41 16 2 N -0.56 -8.81 3.87 -953.47 -3.69 -12.50 16 3 C 0.03 0.29 9.56 127.69 1.22 1.51 16 4 C 0.06 1.02 5.52 85.56 0.47 1.50 16 5 C 0.42 10.94 7.65 137.83 1.05 12.00 16 6 N -0.78 -24.59 12.74 -49.85 -0.64 -25.22 16 7 N -0.59 -16.78 6.49 -50.05 -0.32 -17.11 16 8 O -0.15 -5.59 9.59 -38.80 -0.37 -5.96 16 9 C 0.11 4.36 6.09 71.24 0.43 4.80 16 10 C -0.16 -6.61 5.90 -19.75 -0.12 -6.73 16 11 C -0.04 -1.68 9.15 22.27 0.20 -1.48 16 12 C -0.11 -4.04 6.32 22.35 0.14 -3.90 16 13 Cl -0.08 -2.34 28.95 -2.72 -0.08 -2.42 16 14 C -0.05 -1.82 9.82 22.28 0.22 -1.60 16 15 C -0.22 -9.15 9.14 22.39 0.20 -8.94 16 16 C 0.14 6.38 6.62 22.57 0.15 6.53 16 17 O -0.21 -11.21 9.19 -22.91 -0.21 -11.42 16 18 C -0.41 -22.06 9.46 67.92 0.64 -21.41 16 19 H 0.11 5.10 5.26 -2.91 -0.02 5.08 16 20 C -0.01 -0.64 5.49 84.83 0.47 -0.17 16 21 N -0.91 -51.23 13.67 21.61 0.30 -50.94 16 22 Si 1.01 39.79 29.55 68.60 2.03 41.82 16 23 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 24 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 25 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 26 H 0.04 0.52 8.09 -2.38 -0.02 0.50 16 27 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 1.08 6.71 -2.38 -0.02 1.07 16 29 H 0.08 0.70 7.96 -2.39 -0.02 0.68 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.08 1.07 7.96 -2.39 -0.02 1.05 16 33 H 0.12 1.51 7.81 -2.39 -0.02 1.49 16 34 H 0.36 10.13 6.77 -92.71 -0.63 9.50 16 35 H 0.43 9.54 8.57 -92.71 -0.79 8.75 16 36 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 37 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.14 5.31 7.00 -2.91 -0.02 5.29 16 39 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 40 H 0.14 5.63 5.70 -2.91 -0.02 5.61 16 41 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -66.97 363.92 2.91 -64.06 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: -0.34 Total: 36.18 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 6.23 Total: -16.49 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -4.35 Total: -105.77 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.58 Total: -17.38 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -0.08 Total: -2.42 kcal Total: -66.97 2.91 -64.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902612688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.299 kcal (2) G-P(sol) polarization free energy of solvation -66.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds