Wall clock time and date at job start Tue Mar 31 2020 15:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47341 * 2 1 4 4 C 1.46504 * 119.99574 * 275.00029 * 3 2 1 5 5 C 1.50697 * 109.47025 * 274.99766 * 4 3 2 6 6 H 1.08001 * 119.99970 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00122 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00114 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99879 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46757 * 90.00651 * 9 7 5 11 11 H 1.48499 * 109.47142 * 210.00339 * 9 7 5 12 12 H 1.48504 * 109.47340 * 330.00495 * 9 7 5 13 13 S 1.65599 * 120.00372 * 94.99755 * 3 2 1 14 14 O 1.42105 * 104.27655 * 333.92882 * 13 3 2 15 15 O 1.42101 * 104.27764 * 206.07319 * 13 3 2 16 16 C 1.81395 * 104.44748 * 90.00187 * 13 3 2 17 17 H 1.09001 * 115.55091 * 325.66612 * 16 13 3 18 18 C 1.53000 * 117.50097 * 111.38166 * 16 13 3 19 19 C 1.52999 * 60.00117 * 107.48371 * 18 16 13 20 20 H 1.08996 * 117.50497 * 252.50558 * 19 18 16 21 21 C 1.50700 * 117.51275 * 107.48264 * 19 18 16 22 22 C 1.38274 * 119.98692 * 171.37251 * 21 19 18 23 23 C 1.38227 * 120.05203 * 179.97438 * 22 21 19 24 24 C 1.38217 * 120.02673 * 359.97438 * 23 22 21 25 25 C 1.38441 * 119.97238 * 0.02562 * 24 23 22 26 26 F 1.35106 * 120.02397 * 180.02562 * 25 24 23 27 27 C 1.38182 * 119.99142 * 351.09702 * 21 19 18 28 28 H 1.09005 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47318 * 300.00377 * 1 2 3 30 30 H 1.08999 * 109.47410 * 60.00023 * 1 2 3 31 31 H 1.08995 * 109.47103 * 239.99200 * 2 1 3 32 32 H 1.09001 * 109.46788 * 119.99558 * 2 1 3 33 33 H 1.09000 * 109.46976 * 35.00004 * 4 3 2 34 34 H 1.09000 * 109.47159 * 154.99761 * 4 3 2 35 35 H 0.97002 * 119.99561 * 180.02562 * 8 7 5 36 36 H 1.08996 * 117.49882 * 214.97703 * 18 16 13 37 37 H 1.09006 * 117.49251 * 359.97438 * 18 16 13 38 38 H 1.07996 * 119.97013 * 0.02562 * 22 21 19 39 39 H 1.07994 * 119.98518 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.01701 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.00793 * 359.97438 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.4948 1.7887 -1.8824 6 1 4.1720 1.1109 -1.3839 7 6 3.8530 2.3611 -3.0844 8 7 5.0191 2.0815 -3.6243 9 14 2.6812 3.5328 -3.9469 10 1 2.9451 4.9212 -3.4910 11 1 2.8864 3.4464 -5.4151 12 1 1.2808 3.1621 -3.6201 13 16 2.4122 2.1203 1.4286 14 8 1.6208 1.4497 2.3999 15 8 2.2334 3.5056 1.1675 16 6 4.1696 1.7389 1.6660 17 1 4.4911 0.7609 1.3078 18 6 5.1650 2.8954 1.5530 19 6 4.8485 2.2894 2.9218 20 1 4.2392 2.8806 3.6053 21 6 5.9106 1.4380 3.5686 22 6 5.7547 1.0130 4.8751 23 6 6.7277 0.2316 5.4696 24 6 7.8575 -0.1262 4.7583 25 6 8.0146 0.2988 3.4501 26 9 9.1183 -0.0508 2.7537 27 6 7.0370 1.0777 2.8541 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3617 1.8096 -1.9453 34 1 2.0922 3.1802 -1.0758 35 1 5.2712 2.4846 -4.4699 36 1 6.1416 2.6784 1.1202 37 1 4.7638 3.8853 1.3356 38 1 4.8717 1.2910 5.4313 39 1 6.6051 -0.0995 6.4902 40 1 8.6174 -0.7371 5.2227 41 1 7.1562 1.4058 1.8320 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914061562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:24 Heat of formation + Delta-G solvation = -62.707925 kcal Electronic energy + Delta-G solvation = -25971.234906 eV Core-core repulsion = 22086.831856 eV Total energy + Delta-G solvation = -3884.403050 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.96197 -39.68358 -36.95571 -36.56162 -36.22207 -35.44149 -32.66060 -30.90339 -30.63211 -30.24002 -27.17621 -24.41893 -23.41266 -22.88489 -22.45175 -21.51848 -20.72231 -18.29084 -17.82262 -17.07386 -16.89337 -16.60899 -16.29676 -16.04877 -15.68420 -15.63776 -14.82830 -14.35319 -14.15005 -14.01158 -13.58443 -13.41187 -13.08973 -12.75303 -12.70894 -12.52702 -12.25704 -12.05379 -11.94342 -11.77075 -11.57999 -11.47771 -11.41844 -11.15259 -11.06585 -10.96230 -10.74624 -10.53758 -10.47465 -10.22795 -10.12216 -9.61619 -9.05547 -8.76461 -8.66917 -8.09201 -6.18306 -4.18949 0.75517 0.97681 1.03787 3.02447 3.24789 3.30010 3.34629 3.36130 3.70933 4.06061 4.20318 4.33403 4.42700 4.50411 4.63816 4.67758 4.87199 4.99765 5.07546 5.10434 5.17051 5.21782 5.32788 5.59023 5.67927 5.71692 5.76022 5.88874 5.93400 6.00595 6.02494 6.06160 6.14541 6.23929 6.34408 6.50767 6.61376 6.72533 6.86228 7.10077 7.35870 7.52471 8.37945 8.83894 9.42623 10.94063 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012468 B = 0.004335 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.249911 B = 6458.169248 C = 7727.300772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.127 3.873 3 N -0.975 5.975 4 C 0.213 3.787 5 C -0.542 4.542 6 H 0.079 0.921 7 C 0.077 3.923 8 N -0.894 5.894 9 Si 0.868 3.132 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.263 1.263 13 S 2.638 3.362 14 O -0.968 6.968 15 O -0.955 6.955 16 C -0.654 4.654 17 H 0.159 0.841 18 C -0.099 4.099 19 C -0.086 4.086 20 H 0.124 0.876 21 C -0.019 4.019 22 C -0.123 4.123 23 C -0.090 4.090 24 C -0.160 4.160 25 C 0.102 3.898 26 F -0.139 7.139 27 C -0.149 4.149 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.046 0.954 35 H 0.265 0.735 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.315 -3.144 15.396 15.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.813 5.813 4 C 0.090 3.910 5 C -0.581 4.581 6 H 0.097 0.903 7 C -0.126 4.126 8 N -0.532 5.532 9 Si 0.695 3.305 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.188 1.188 13 S 2.729 3.271 14 O -0.959 6.959 15 O -0.946 6.946 16 C -0.760 4.760 17 H 0.177 0.823 18 C -0.137 4.137 19 C -0.105 4.105 20 H 0.142 0.858 21 C -0.019 4.019 22 C -0.141 4.141 23 C -0.108 4.108 24 C -0.178 4.178 25 C 0.082 3.918 26 F -0.117 7.117 27 C -0.167 4.167 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.900 -2.634 15.718 15.963 hybrid contribution 0.435 -0.043 -1.159 1.239 sum 1.335 -2.678 14.559 14.863 Atomic orbital electron populations 1.22203 0.96737 1.01535 1.02404 1.21052 0.93818 0.82441 1.02570 1.57129 1.78155 1.23190 1.22835 1.19612 0.98123 0.92414 0.80863 1.21447 1.00983 1.29186 1.06521 0.90257 1.24837 0.94947 0.96012 0.96833 1.69892 1.20562 1.43787 1.18932 0.86961 0.82212 0.82230 0.79110 1.19667 1.21065 1.18760 1.03973 0.75749 0.74131 0.73290 1.93535 1.65018 1.76236 1.61095 1.93547 1.84767 1.31996 1.84263 1.32938 1.24052 1.09773 1.09264 0.82313 1.22931 0.99518 0.95928 0.95284 1.20855 0.99101 1.00631 0.89950 0.85808 1.18876 0.93255 0.96233 0.93550 1.21103 0.99751 0.98673 0.94571 1.20970 0.92823 0.97048 0.99946 1.21153 1.00201 1.03186 0.93304 1.17662 0.84524 0.98840 0.90724 1.91516 1.50867 1.90379 1.78987 1.21180 0.93788 0.99917 1.01850 0.92178 0.92326 0.92318 0.89896 0.91491 0.94422 0.93632 0.92485 0.86683 0.85881 0.84941 0.84838 0.84827 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.24 37.16 0.38 -2.18 16 2 C 0.13 2.13 5.98 -4.04 -0.02 2.11 16 3 N -0.98 -19.05 2.70 -115.67 -0.31 -19.36 16 4 C 0.21 4.84 4.48 -5.19 -0.02 4.82 16 5 C -0.54 -14.00 9.94 -34.44 -0.34 -14.35 16 6 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 7 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 9 Si 0.87 20.47 27.47 -169.99 -4.67 15.80 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 13 S 2.64 48.39 5.74 -107.50 -0.62 47.78 16 14 O -0.97 -18.37 16.75 -57.54 -0.96 -19.33 16 15 O -0.96 -19.91 15.82 -57.54 -0.91 -20.82 16 16 C -0.65 -10.33 6.22 -26.73 -0.17 -10.50 16 17 H 0.16 2.48 8.14 -51.93 -0.42 2.06 16 18 C -0.10 -1.48 9.49 -26.73 -0.25 -1.73 16 19 C -0.09 -1.14 5.81 -91.77 -0.53 -1.67 16 20 H 0.12 1.40 8.14 -51.93 -0.42 0.97 16 21 C -0.02 -0.23 5.61 -104.63 -0.59 -0.82 16 22 C -0.12 -1.29 9.74 -39.57 -0.39 -1.68 16 23 C -0.09 -0.83 10.04 -39.59 -0.40 -1.23 16 24 C -0.16 -1.64 10.03 -39.51 -0.40 -2.03 16 25 C 0.10 1.28 7.30 -39.42 -0.29 0.99 16 26 F -0.14 -1.89 17.27 2.25 0.04 -1.86 16 27 C -0.15 -1.95 9.27 -39.51 -0.37 -2.32 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.92 7.90 -51.93 -0.41 0.51 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 32 H 0.07 1.00 7.61 -51.93 -0.40 0.60 16 33 H 0.04 0.85 7.17 -51.93 -0.37 0.47 16 34 H 0.05 1.07 6.24 -51.93 -0.32 0.75 16 35 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.12 1.64 6.18 -51.93 -0.32 1.32 16 37 H 0.12 1.83 7.66 -51.93 -0.40 1.43 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 40 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.14 1.89 6.03 -52.49 -0.32 1.58 16 LS Contribution 360.08 15.07 5.43 5.43 Total: -1.00 -31.64 360.08 -10.22 -41.86 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.51 Total: 4.06 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -3.48 Total: -28.59 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.46 Total: -44.33 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -1.87 Total: -40.15 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.80 kcal Atomic # 16 Polarization: 48.39 SS G_CDS: -0.62 Total: 47.78 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.64 -10.22 -41.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914061562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.847 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds