Wall clock time and date at job start Tue Mar 31 2020 15:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47341 * 2 1 4 4 C 1.46504 * 119.99574 * 275.00029 * 3 2 1 5 5 C 1.50697 * 109.47025 * 274.99766 * 4 3 2 6 6 H 1.08001 * 119.99970 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00122 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00114 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99879 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46757 * 90.00651 * 9 7 5 11 11 H 1.48499 * 109.47142 * 210.00339 * 9 7 5 12 12 H 1.48504 * 109.47340 * 330.00495 * 9 7 5 13 13 S 1.65599 * 120.00372 * 94.99755 * 3 2 1 14 14 O 1.42105 * 104.27655 * 333.92882 * 13 3 2 15 15 O 1.42101 * 104.27764 * 206.07319 * 13 3 2 16 16 C 1.81395 * 104.44748 * 90.00187 * 13 3 2 17 17 H 1.09001 * 115.55091 * 325.66612 * 16 13 3 18 18 C 1.53000 * 117.50097 * 111.38166 * 16 13 3 19 19 C 1.52999 * 60.00117 * 107.48371 * 18 16 13 20 20 H 1.08996 * 117.50497 * 252.50558 * 19 18 16 21 21 C 1.50700 * 117.51275 * 107.48264 * 19 18 16 22 22 C 1.38274 * 119.98692 * 171.37251 * 21 19 18 23 23 C 1.38227 * 120.05203 * 179.97438 * 22 21 19 24 24 C 1.38217 * 120.02673 * 359.97438 * 23 22 21 25 25 C 1.38441 * 119.97238 * 0.02562 * 24 23 22 26 26 F 1.35106 * 120.02397 * 180.02562 * 25 24 23 27 27 C 1.38182 * 119.99142 * 351.09702 * 21 19 18 28 28 H 1.09005 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47318 * 300.00377 * 1 2 3 30 30 H 1.08999 * 109.47410 * 60.00023 * 1 2 3 31 31 H 1.08995 * 109.47103 * 239.99200 * 2 1 3 32 32 H 1.09001 * 109.46788 * 119.99558 * 2 1 3 33 33 H 1.09000 * 109.46976 * 35.00004 * 4 3 2 34 34 H 1.09000 * 109.47159 * 154.99761 * 4 3 2 35 35 H 0.97002 * 119.99561 * 180.02562 * 8 7 5 36 36 H 1.08996 * 117.49882 * 214.97703 * 18 16 13 37 37 H 1.09006 * 117.49251 * 359.97438 * 18 16 13 38 38 H 1.07996 * 119.97013 * 0.02562 * 22 21 19 39 39 H 1.07994 * 119.98518 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.01701 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.00793 * 359.97438 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.4948 1.7887 -1.8824 6 1 4.1720 1.1109 -1.3839 7 6 3.8530 2.3611 -3.0844 8 7 5.0191 2.0815 -3.6243 9 14 2.6812 3.5328 -3.9469 10 1 2.9451 4.9212 -3.4910 11 1 2.8864 3.4464 -5.4151 12 1 1.2808 3.1621 -3.6201 13 16 2.4122 2.1203 1.4286 14 8 1.6208 1.4497 2.3999 15 8 2.2334 3.5056 1.1675 16 6 4.1696 1.7389 1.6660 17 1 4.4911 0.7609 1.3078 18 6 5.1650 2.8954 1.5530 19 6 4.8485 2.2894 2.9218 20 1 4.2392 2.8806 3.6053 21 6 5.9106 1.4380 3.5686 22 6 5.7547 1.0130 4.8751 23 6 6.7277 0.2316 5.4696 24 6 7.8575 -0.1262 4.7583 25 6 8.0146 0.2988 3.4501 26 9 9.1183 -0.0508 2.7537 27 6 7.0370 1.0777 2.8541 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3617 1.8096 -1.9453 34 1 2.0922 3.1802 -1.0758 35 1 5.2712 2.4846 -4.4699 36 1 6.1416 2.6784 1.1202 37 1 4.7638 3.8853 1.3356 38 1 4.8717 1.2910 5.4313 39 1 6.6051 -0.0995 6.4902 40 1 8.6174 -0.7371 5.2227 41 1 7.1562 1.4058 1.8320 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914061562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:23 Heat of formation + Delta-G solvation = -81.497160 kcal Electronic energy + Delta-G solvation = -25972.049668 eV Core-core repulsion = 22086.831856 eV Total energy + Delta-G solvation = -3885.217812 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.95336 -40.63116 -38.29805 -37.80069 -37.77992 -36.97663 -34.65019 -31.82991 -31.77291 -31.50577 -28.93323 -25.41497 -24.78181 -24.34055 -23.43526 -23.07879 -21.73054 -19.73206 -19.00937 -18.97799 -18.27885 -17.92077 -17.28555 -17.14743 -17.05750 -16.64964 -16.25350 -15.97055 -15.52597 -14.90786 -14.77735 -14.74279 -14.53298 -14.15016 -14.09797 -13.71228 -13.65273 -13.53016 -13.33087 -13.08570 -13.04654 -12.76649 -12.64829 -12.60271 -12.45809 -12.23421 -12.13510 -12.09731 -11.85639 -11.72524 -11.58488 -11.49195 -10.75497 -9.98700 -9.76403 -9.59199 -8.27550 -6.31398 -0.65839 0.05823 0.16735 1.37723 1.40994 1.48501 1.68469 2.13917 2.36037 2.67579 2.82200 3.07502 3.16428 3.22867 3.41997 3.54537 3.67101 3.77938 3.91969 3.99041 4.14700 4.19692 4.37811 4.41386 4.46614 4.55275 4.70641 4.70700 4.79847 4.93286 4.96363 4.99351 5.05122 5.06326 5.12909 5.31795 5.40115 5.44001 5.45231 5.49494 5.80815 5.88086 6.32047 6.73441 7.33261 8.87560 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012468 B = 0.004335 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.249911 B = 6458.169248 C = 7727.300772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.116 3.884 3 N -0.985 5.985 4 C 0.221 3.779 5 C -0.534 4.534 6 H 0.053 0.947 7 C 0.024 3.976 8 N -0.939 5.939 9 Si 0.922 3.078 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.244 1.244 13 S 2.646 3.354 14 O -0.974 6.974 15 O -0.984 6.984 16 C -0.661 4.661 17 H 0.157 0.843 18 C -0.114 4.114 19 C -0.059 4.059 20 H 0.149 0.851 21 C -0.038 4.038 22 C -0.119 4.119 23 C -0.080 4.080 24 C -0.152 4.152 25 C 0.076 3.924 26 F -0.152 7.152 27 C -0.166 4.166 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.040 0.960 35 H 0.266 0.734 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.158 0.842 39 H 0.173 0.827 40 H 0.158 0.842 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.238 -3.641 17.773 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.009 4.009 3 N -0.822 5.822 4 C 0.096 3.904 5 C -0.573 4.573 6 H 0.071 0.929 7 C -0.176 4.176 8 N -0.579 5.579 9 Si 0.745 3.255 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.167 1.167 13 S 2.740 3.260 14 O -0.964 6.964 15 O -0.974 6.974 16 C -0.770 4.770 17 H 0.174 0.826 18 C -0.152 4.152 19 C -0.079 4.079 20 H 0.166 0.834 21 C -0.038 4.038 22 C -0.137 4.137 23 C -0.098 4.098 24 C -0.170 4.170 25 C 0.057 3.943 26 F -0.131 7.131 27 C -0.185 4.185 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.176 0.824 39 H 0.191 0.809 40 H 0.176 0.824 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.232 -3.145 18.105 18.377 hybrid contribution 0.871 0.020 -1.765 1.968 sum 0.638 -3.124 16.340 16.648 Atomic orbital electron populations 1.22187 0.95229 1.03352 1.01788 1.21312 0.95169 0.81141 1.03262 1.57132 1.78999 1.24186 1.21878 1.19334 0.96361 0.92429 0.82248 1.21653 1.01833 1.27750 1.06096 0.92855 1.25601 0.96348 0.97781 0.97823 1.70020 1.22577 1.45618 1.19650 0.86093 0.81224 0.80117 0.78020 1.19466 1.20783 1.16724 1.03593 0.76394 0.73270 0.72752 1.93518 1.65984 1.76059 1.60847 1.93506 1.85711 1.33661 1.84556 1.32648 1.21890 1.09929 1.12521 0.82553 1.23003 0.99174 0.95455 0.97579 1.21069 0.98367 0.99270 0.89172 0.83370 1.18900 0.92885 0.97342 0.94695 1.21475 1.00841 0.97819 0.93569 1.21424 0.91445 0.95513 1.01374 1.21516 1.01097 1.02333 0.92067 1.17952 0.84380 1.00011 0.91949 1.91478 1.51483 1.90623 1.79514 1.21170 0.94863 1.00913 1.01523 0.89202 0.92993 0.92811 0.90375 0.89710 0.93724 0.94248 0.92493 0.86862 0.86147 0.82437 0.80911 0.82423 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.74 10.24 71.98 0.74 -4.01 16 2 C 0.12 3.79 5.98 86.38 0.52 4.31 16 3 N -0.98 -38.26 2.70 -519.85 -1.40 -39.66 16 4 C 0.22 10.01 4.48 85.63 0.38 10.40 16 5 C -0.53 -28.12 9.94 25.60 0.25 -27.87 16 6 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 7 C 0.02 1.29 5.47 84.65 0.46 1.75 16 8 N -0.94 -55.52 13.96 21.45 0.30 -55.22 16 9 Si 0.92 42.05 27.47 68.60 1.88 43.94 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.24 -10.28 6.54 99.48 0.65 -9.63 16 13 S 2.65 96.06 5.74 -56.49 -0.32 95.73 16 14 O -0.97 -35.65 16.75 -127.65 -2.14 -37.79 16 15 O -0.98 -40.96 15.82 -127.65 -2.02 -42.98 16 16 C -0.66 -20.96 6.22 30.60 0.19 -20.77 16 17 H 0.16 5.03 8.14 -2.39 -0.02 5.01 16 18 C -0.11 -3.49 9.49 30.59 0.29 -3.20 16 19 C -0.06 -1.51 5.81 -11.54 -0.07 -1.58 16 20 H 0.15 3.01 8.14 -2.39 -0.02 2.99 16 21 C -0.04 -0.89 5.61 -19.87 -0.11 -1.00 16 22 C -0.12 -2.11 9.74 22.28 0.22 -1.89 16 23 C -0.08 -1.15 10.04 22.26 0.22 -0.93 16 24 C -0.15 -2.71 10.03 22.31 0.22 -2.48 16 25 C 0.08 1.88 7.30 22.38 0.16 2.05 16 26 F -0.15 -4.23 17.27 44.97 0.78 -3.45 16 27 C -0.17 -4.40 9.27 22.31 0.21 -4.19 16 28 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.05 1.54 7.90 -2.39 -0.02 1.52 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 2.60 8.11 -2.39 -0.02 2.58 16 32 H 0.08 2.43 7.61 -2.39 -0.02 2.41 16 33 H 0.04 1.96 7.17 -2.39 -0.02 1.94 16 34 H 0.04 1.85 6.24 -2.39 -0.01 1.84 16 35 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 36 H 0.11 3.45 6.18 -2.39 -0.01 3.44 16 37 H 0.12 3.70 7.66 -2.38 -0.02 3.69 16 38 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.13 3.62 6.03 -2.91 -0.02 3.60 16 Total: -1.00 -68.93 360.08 1.75 -67.18 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.98 Total: 21.67 kcal Atomic # 6 Polarization: -53.10 SS G_CDS: 3.69 Total: -49.41 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -1.10 Total: -94.88 kcal Atomic # 8 Polarization: -76.61 SS G_CDS: -4.16 Total: -80.77 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.78 Total: -3.45 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.88 Total: 43.94 kcal Atomic # 16 Polarization: 96.06 SS G_CDS: -0.32 Total: 95.73 kcal Total: -68.93 1.75 -67.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914061562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.317 kcal (2) G-P(sol) polarization free energy of solvation -68.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds