Wall clock time and date at job start Tue Mar 31 2020 15:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47262 * 2 1 4 4 C 1.46500 * 120.00214 * 275.00199 * 3 2 1 5 5 C 1.50705 * 109.47046 * 275.00048 * 4 3 2 6 6 H 1.07997 * 119.99629 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99952 * 179.97438 * 5 4 3 8 8 N 1.31520 * 120.00112 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00097 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46930 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47388 * 120.00003 * 9 7 5 12 12 H 1.48503 * 109.47135 * 240.00055 * 9 7 5 13 13 S 1.65602 * 119.99815 * 95.00020 * 3 2 1 14 14 O 1.42103 * 104.27578 * 333.92970 * 13 3 2 15 15 O 1.42096 * 104.27525 * 206.07127 * 13 3 2 16 16 C 1.81400 * 104.44972 * 90.00016 * 13 3 2 17 17 H 1.09002 * 115.55860 * 39.29534 * 16 13 3 18 18 C 1.53000 * 117.50197 * 253.60971 * 16 13 3 19 19 C 1.52997 * 117.50001 * 184.98202 * 16 13 3 20 20 H 1.08999 * 117.49685 * 0.02562 * 19 16 13 21 21 C 1.50696 * 117.52180 * 214.96873 * 19 16 13 22 22 C 1.38262 * 119.98926 * 299.71203 * 21 19 16 23 23 C 1.38224 * 120.04986 * 179.72160 * 22 21 19 24 24 C 1.38227 * 120.02619 * 0.54735 * 23 22 21 25 25 C 1.38435 * 119.97374 * 359.72468 * 24 23 22 26 26 F 1.35092 * 120.02626 * 180.02562 * 25 24 23 27 27 C 1.38175 * 119.98574 * 119.97860 * 21 19 16 28 28 H 1.08998 * 109.47296 * 300.00093 * 1 2 3 29 29 H 1.08999 * 109.47100 * 59.99899 * 1 2 3 30 30 H 1.09000 * 109.47098 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46990 * 240.00268 * 2 1 3 32 32 H 1.08999 * 109.47602 * 120.00267 * 2 1 3 33 33 H 1.09005 * 109.46883 * 34.99602 * 4 3 2 34 34 H 1.09000 * 109.47191 * 154.99800 * 4 3 2 35 35 H 0.97000 * 119.99819 * 179.97438 * 8 7 5 36 36 H 1.08990 * 117.49990 * 145.01827 * 18 16 13 37 37 H 1.09004 * 117.49237 * 359.97438 * 18 16 13 38 38 H 1.07998 * 119.97380 * 359.97438 * 22 21 19 39 39 H 1.08002 * 119.98716 * 180.27206 * 23 22 21 40 40 H 1.08006 * 120.01172 * 179.70189 * 24 23 22 41 41 H 1.08011 * 120.01429 * 359.97438 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4948 1.7889 -1.8823 6 1 4.1723 1.1117 -1.3836 7 6 3.8525 2.3606 -3.0848 8 7 3.0271 3.1849 -3.6924 9 14 5.5088 1.9636 -3.8518 10 1 6.2453 1.0166 -2.9766 11 1 5.3012 1.3459 -5.1861 12 1 6.2971 3.2131 -4.0021 13 16 2.4122 2.1202 1.4287 14 8 1.6208 1.4495 2.3999 15 8 2.2334 3.5055 1.1677 16 6 4.1697 1.7388 1.6661 17 1 4.7826 1.7656 0.7652 18 6 4.5303 0.7055 2.7353 19 6 4.8195 2.1886 2.9762 20 1 4.1908 2.7132 3.6956 21 6 6.2580 2.6345 2.9229 22 6 7.2380 1.7575 2.4961 23 6 8.5570 2.1670 2.4412 24 6 8.8993 3.4504 2.8237 25 6 7.9197 4.3276 3.2566 26 9 8.2530 5.5823 3.6302 27 6 6.5978 3.9179 3.3058 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.3617 1.8098 -1.9453 34 1 2.0922 3.1803 -1.0755 35 1 3.2790 3.5874 -4.5383 36 1 5.3803 0.0526 2.5378 37 1 3.7114 0.2552 3.2964 38 1 6.9721 0.7531 2.2015 39 1 9.3211 1.4825 2.1034 40 1 9.9308 3.7686 2.7853 41 1 5.8326 4.6016 3.6428 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914061563.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:27 Heat of formation + Delta-G solvation = -67.489135 kcal Electronic energy + Delta-G solvation = -25965.697852 eV Core-core repulsion = 22081.087473 eV Total energy + Delta-G solvation = -3884.610379 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.98386 -39.70876 -36.96526 -36.48663 -36.06060 -35.34149 -32.73811 -31.24150 -30.30911 -29.94406 -26.64333 -24.37866 -23.44582 -23.09965 -22.66207 -21.63562 -20.71347 -18.24781 -17.72342 -16.98085 -16.77797 -16.37106 -16.29534 -16.00863 -15.67426 -15.65959 -14.86378 -14.54574 -14.07064 -13.89695 -13.57437 -13.29671 -13.00439 -12.88607 -12.71607 -12.31238 -12.09519 -12.03838 -11.98817 -11.69653 -11.56370 -11.33968 -11.23668 -11.09013 -11.06063 -10.95911 -10.89278 -10.50074 -10.46323 -10.31048 -9.97824 -9.76875 -9.04513 -8.75396 -8.52981 -8.02430 -6.14521 -4.21979 0.82132 0.99510 1.06250 3.01728 3.21127 3.28815 3.30418 3.41205 3.64139 4.00792 4.26429 4.33827 4.42798 4.51026 4.62941 4.65937 4.86821 4.95571 5.00330 5.14988 5.20347 5.25755 5.41510 5.52215 5.61975 5.75964 5.78561 5.84391 5.90336 5.95884 6.02157 6.12218 6.15009 6.32294 6.34355 6.66686 6.71141 6.73368 7.34475 7.41244 7.64199 7.82198 8.11232 8.82590 9.44510 10.93395 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009876 B = 0.005007 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.564941 B = 5591.181650 C = 7312.091759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 N -0.979 5.979 4 C 0.243 3.757 5 C -0.545 4.545 6 H 0.062 0.938 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 S 2.636 3.364 14 O -0.972 6.972 15 O -0.950 6.950 16 C -0.661 4.661 17 H 0.171 0.829 18 C -0.119 4.119 19 C -0.077 4.077 20 H 0.123 0.877 21 C -0.019 4.019 22 C -0.125 4.125 23 C -0.087 4.087 24 C -0.158 4.158 25 C 0.101 3.899 26 F -0.140 7.140 27 C -0.144 4.144 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.264 0.736 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.062 -5.574 13.173 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.818 5.818 4 C 0.121 3.879 5 C -0.584 4.584 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 S 2.727 3.273 14 O -0.963 6.963 15 O -0.941 6.941 16 C -0.767 4.767 17 H 0.189 0.811 18 C -0.156 4.156 19 C -0.096 4.096 20 H 0.141 0.859 21 C -0.020 4.020 22 C -0.143 4.143 23 C -0.106 4.106 24 C -0.177 4.177 25 C 0.081 3.919 26 F -0.119 7.119 27 C -0.163 4.163 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.482 -4.906 13.536 15.790 hybrid contribution 1.723 -0.128 -1.049 2.022 sum 8.205 -5.035 12.487 15.767 Atomic orbital electron populations 1.22198 0.96845 1.01300 1.02533 1.20994 0.93793 0.82721 1.02086 1.57347 1.77821 1.23098 1.23558 1.19245 0.97221 0.92602 0.78875 1.21599 1.02359 1.28150 1.06293 0.92020 1.24950 0.97182 0.94771 0.96895 1.69941 1.35839 1.29686 1.17011 0.86551 0.83937 0.78287 0.79312 1.19735 1.20825 1.20829 1.04031 0.75597 0.74322 0.73391 1.93520 1.64778 1.76409 1.61556 1.93570 1.84553 1.31863 1.84090 1.33273 1.27918 1.13871 1.01590 0.81100 1.22956 1.04253 0.90770 0.97665 1.20747 0.93749 0.98977 0.96150 0.85894 1.18834 0.93204 0.92853 0.97081 1.21166 0.92509 1.00408 1.00185 1.20984 0.96440 0.95206 0.97920 1.21153 0.99433 0.94368 1.02723 1.17622 0.93528 0.80097 1.00610 1.91499 1.93142 1.38115 1.89097 1.20996 0.95041 0.96916 1.03355 0.92396 0.92164 0.92426 0.90272 0.91772 0.94113 0.92829 0.92567 0.86962 0.86187 0.84910 0.84831 0.84780 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.13 2.19 5.98 -4.04 -0.02 2.16 16 3 N -0.98 -19.65 2.70 -115.66 -0.31 -19.96 16 4 C 0.24 5.95 5.41 -5.19 -0.03 5.92 16 5 C -0.54 -14.02 9.38 -34.44 -0.32 -14.35 16 6 H 0.06 1.50 7.54 -52.49 -0.40 1.11 16 7 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 9 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 S 2.64 49.76 5.74 -107.50 -0.62 49.14 16 14 O -0.97 -18.18 16.05 -57.54 -0.92 -19.11 16 15 O -0.95 -21.73 16.53 -57.54 -0.95 -22.68 16 16 C -0.66 -10.23 6.23 -26.73 -0.17 -10.40 16 17 H 0.17 2.87 7.87 -51.93 -0.41 2.46 16 18 C -0.12 -1.39 9.49 -26.73 -0.25 -1.64 16 19 C -0.08 -1.00 5.80 -91.77 -0.53 -1.53 16 20 H 0.12 1.43 8.14 -51.93 -0.42 1.00 16 21 C -0.02 -0.25 5.61 -104.64 -0.59 -0.83 16 22 C -0.12 -1.44 9.30 -39.58 -0.37 -1.81 16 23 C -0.09 -0.91 10.04 -39.59 -0.40 -1.31 16 24 C -0.16 -1.74 10.03 -39.51 -0.40 -2.13 16 25 C 0.10 1.28 7.30 -39.42 -0.29 0.99 16 26 F -0.14 -1.85 17.27 2.25 0.04 -1.81 16 27 C -0.14 -1.87 9.72 -39.51 -0.38 -2.26 16 28 H 0.06 0.94 7.90 -51.93 -0.41 0.53 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 32 H 0.06 0.92 7.61 -51.93 -0.40 0.52 16 33 H 0.04 1.04 8.11 -51.93 -0.42 0.62 16 34 H 0.05 1.46 6.82 -51.93 -0.35 1.11 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.11 1.07 6.17 -51.93 -0.32 0.75 16 37 H 0.12 1.28 7.68 -51.93 -0.40 0.88 16 38 H 0.13 1.31 6.01 -52.49 -0.32 0.99 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 41 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 363.14 15.07 5.47 5.47 Total: -1.00 -31.97 363.14 -10.55 -42.53 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.51 Total: 3.24 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -3.47 Total: -27.78 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.42 Total: -44.50 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.87 Total: -41.79 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 49.76 SS G_CDS: -0.62 Total: 49.14 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.97 -10.55 -42.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914061563.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.963 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds